Special Issue on Phylogenetic Combinatorics PDF Download
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Author: Vincent Moulton
Publisher:
ISBN:
Category :
Languages : en
Pages :
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Author: Vincent Moulton
Publisher:
ISBN:
Category :
Languages : en
Pages :
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Author: Andreas Dress
Publisher: Cambridge University Press
ISBN: 0521768322
Category : Mathematics
Languages : en
Pages : 277
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The first book to systematically introduce the emerging area of phylogenetic combinatorics.
Author: Andreas Dress
Publisher:
ISBN: 9783832274818
Category :
Languages : en
Pages : 206
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Author: Paolo Ferragina
Publisher: Springer Science & Business Media
ISBN: 3540690662
Category : Computers
Languages : en
Pages : 327
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Book Description
This book constitutes the refereed proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM 2008, held in Pisa, Italy, in June 2008. The 25 revised full papers presented together with 3 invited talks were carefully reviewed and selected from 78 submissions. The papers address all areas related to combinatorial pattern matching and its applications, such as coding and data compression, computational biology, data mining, information retrieval, natural language processing, pattern recognition, string algorithms, string processing in databases, symbolic computing and text searching.
Author: Alberto Apostolico
Publisher: Springer
ISBN: 3540315624
Category : Computers
Languages : en
Pages : 453
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Book Description
This book constitutes the refereed proceedings of the 16th Annual Symposium on Combinatorial Pattern Matching, CPM 2005, held in Jeju island, Korea on June 19-22, 2005. The 37 revised full papers presented were carefully reviewed and selected from 129 submissions. They constitute original research contributions in combinatorial pattern matching and its applications. Among the application fields addressed are computational biology, bioinformatics, genomics, proteinomics, data compression, Sequence Analysis and Graphs, information retrieval, data analysis, and pattern recognition.
Author:
Publisher:
ISBN:
Category :
Languages : en
Pages : 113
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Author: Dan Gusfield
Publisher: MIT Press
ISBN: 0262324482
Category : Mathematics
Languages : en
Pages : 601
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Combinatorial structure and algorithms for deducing genetic recombination history, represented by ancestral recombination graphs and other networks, and their role in the emerging field of phylogenetic networks. In this book, Dan Gusfield examines combinatorial algorithms to construct genealogical and exact phylogenetic networks, particularly ancestral recombination graphs (ARGs). The algorithms produce networks (or information about networks) that serve as hypotheses about the true genealogical history of observed biological sequences and can be applied to practical biological problems. Phylogenetic trees have been the traditional means to represent evolutionary history, but there is a growing realization that networks rather than trees are often needed, most notably for recent human history. This has led to the development of ARGs in population genetics and, more broadly, to phylogenetic networks. ReCombinatorics offers an in-depth, rigorous examination of current research on the combinatorial, graph-theoretic structure of ARGs and explicit phylogenetic networks, and algorithms to reconstruct or deduce information about those networks. ReCombinatorics, a groundbreaking contribution to the emerging field of phylogenetic networks, connects and unifies topics in population genetics and phylogenetics that have traditionally been discussed separately and considered to be unrelated. It covers the necessary combinatorial and algorithmic background material; the various biological phenomena; the mathematical, population genetic, and phylogenetic models that capture the essential elements of these phenomena; the combinatorial and algorithmic problems that derive from these models; the theoretical results that have been obtained; related software that has been developed; and some empirical testing of the software on simulated and real biological data.
Author: Andreas Dress
Publisher: Cambridge University Press
ISBN: 113950438X
Category : Mathematics
Languages : en
Pages : 277
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Book Description
Phylogenetic combinatorics is a branch of discrete applied mathematics concerned with the combinatorial description and analysis of phylogenetic trees and related mathematical structures such as phylogenetic networks and tight spans. Based on a natural conceptual framework, the book focuses on the interrelationship between the principal options for encoding phylogenetic trees: split systems, quartet systems and metrics. Such encodings provide useful options for analyzing and manipulating phylogenetic trees and networks, and are at the basis of much of phylogenetic data processing. This book highlights how each one provides a unique perspective for viewing and perceiving the combinatorial structure of a phylogenetic tree and is, simultaneously, a rich source for combinatorial analysis and theory building. Graduate students and researchers in mathematics and computer science will enjoy exploring this fascinating new area and learn how mathematics may be used to help solve topical problems arising in evolutionary biology.
Author: Raffaele Giancarlo
Publisher: Springer
ISBN: 3540451234
Category : Computers
Languages : en
Pages : 434
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Book Description
This book constitutes the refereed proceedings of the 11th Annual Symposium on Combinatorial Pattern Matching, CPM 2000, held in Montreal, Canada, in June 2000.The 29 revised full papers presented together with 3 invited contributions and 2 tutorial lectures were carefully reviewed and selected from 44 submissions. The papers are devoted to current theoretical and algorithmic issues of searching and matching strings and more complicated patterns such as trees, regular expression graphs, point sets and arrays as well as to advanced applications of CPM in areas such as Internet, computational biology, multimedia systems, information retrieval, data compression, and pattern recognition.
Author:
Publisher:
ISBN:
Category : Combinatorial analysis
Languages : en
Pages : 476
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