Analysis of the Zebrafish Olfactory System Using Immunohistochemistry and Enhanced Techniques of Desorption Electrospray Ionization Mass Spectrometry (DESI-MS)

Analysis of the Zebrafish Olfactory System Using Immunohistochemistry and Enhanced Techniques of Desorption Electrospray Ionization Mass Spectrometry (DESI-MS) PDF Author: Tara Lynn Maser
Publisher:
ISBN:
Category : Electrospray ionization mass spectrometry
Languages : en
Pages : 0

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Book Description
Desorption electrospray ionization (DESI-MS) is an ambient ionization technique where the sample is analyzed directly from a surface with very minimal sample preparation under ambient conditions and follows ESI-like ionization mechanisms. DESI-MS has proven powerful in analyzing or imaging lipids and other small molecules directly from biological samples and even allows for subsequent histological staining and analyses. However, DESI-MS is less widely used for protein analysis due to a lack of sensitivity and the complex diversity of proteins in biological samples. A major goal of this research has been to obtain new neurobiological knowledge by combining histology and mass spectrometry through a collaborative project. The work presented here focuses on (1) examining and comparing the different sensory neurons in the zebrafish olfactory system before and after chemical damage, (2) improving DESI-MS analysis of proteins and lipids through multiple approaches, and (3) utilizing signal improving techniques to analyze lipids and proteins present in zebrafish olfactory tissue. Zebrafish olfactory organs were examined after chemical damage with Triton X- 100 detergent. Statistical analyses revealed that sensory neurons mediating food detection are more resistant to damage than the other neuronal subtypes. To investigate metabolic changes in different damage states, DESI-MS analyses revealed chemical disturbances in both the treatment and internal control rosettes of treated fish. Principal component analysis (PCA) was used to determine differences in spectral features displaying separation and clustering of samples between treatment groups. We discovered that internal control rosettes undergo lipid changes as well, even though they were not subjected to the chemical insult. Thus, great care should be taken when defining intra-animal controls in future studies. Protein analysis improved with the addition of a pre-wetting solvent through a “wetting-quill” and through the addition of organic solvent vapors. The wetting-quill increased dissolution time, one of the major contributors to the loss of protein signal. However, results indicated a need to use the bare minimum amount of solvent additions. This minimum was best attained by using solvent vapors in the ionization region, rather than liquid application. Similar to previously reported ESI-MS results, protein signal intensity was improved when the DESI sprayer was exposed to polar vapors such as acetonitrile or ethyl acetate. Finally, we successfully show that the novel DESI-improvement methods developed by our lab can be applied to the analysis of biological tissues. When analyzed with the addition of ethyl acetate and/or L-serine, both protein and lipid signal intensities and S/N ratios were improved. We also observed that some lipids, especially those carrying a phosphocholine headgroup, formed serine adducts making them detectable in the negative mode without the use of acidic modifiers which can disrupt histology results. This makes L-serine a potentially useful additive in experiments where histological analysis is required from the same tissue sample previously analyzed by DESI-MS.

Analysis of the Zebrafish Olfactory System Using Immunohistochemistry and Enhanced Techniques of Desorption Electrospray Ionization Mass Spectrometry (DESI-MS)

Analysis of the Zebrafish Olfactory System Using Immunohistochemistry and Enhanced Techniques of Desorption Electrospray Ionization Mass Spectrometry (DESI-MS) PDF Author: Tara Lynn Maser
Publisher:
ISBN:
Category : Electrospray ionization mass spectrometry
Languages : en
Pages : 0

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Book Description
Desorption electrospray ionization (DESI-MS) is an ambient ionization technique where the sample is analyzed directly from a surface with very minimal sample preparation under ambient conditions and follows ESI-like ionization mechanisms. DESI-MS has proven powerful in analyzing or imaging lipids and other small molecules directly from biological samples and even allows for subsequent histological staining and analyses. However, DESI-MS is less widely used for protein analysis due to a lack of sensitivity and the complex diversity of proteins in biological samples. A major goal of this research has been to obtain new neurobiological knowledge by combining histology and mass spectrometry through a collaborative project. The work presented here focuses on (1) examining and comparing the different sensory neurons in the zebrafish olfactory system before and after chemical damage, (2) improving DESI-MS analysis of proteins and lipids through multiple approaches, and (3) utilizing signal improving techniques to analyze lipids and proteins present in zebrafish olfactory tissue. Zebrafish olfactory organs were examined after chemical damage with Triton X- 100 detergent. Statistical analyses revealed that sensory neurons mediating food detection are more resistant to damage than the other neuronal subtypes. To investigate metabolic changes in different damage states, DESI-MS analyses revealed chemical disturbances in both the treatment and internal control rosettes of treated fish. Principal component analysis (PCA) was used to determine differences in spectral features displaying separation and clustering of samples between treatment groups. We discovered that internal control rosettes undergo lipid changes as well, even though they were not subjected to the chemical insult. Thus, great care should be taken when defining intra-animal controls in future studies. Protein analysis improved with the addition of a pre-wetting solvent through a “wetting-quill” and through the addition of organic solvent vapors. The wetting-quill increased dissolution time, one of the major contributors to the loss of protein signal. However, results indicated a need to use the bare minimum amount of solvent additions. This minimum was best attained by using solvent vapors in the ionization region, rather than liquid application. Similar to previously reported ESI-MS results, protein signal intensity was improved when the DESI sprayer was exposed to polar vapors such as acetonitrile or ethyl acetate. Finally, we successfully show that the novel DESI-improvement methods developed by our lab can be applied to the analysis of biological tissues. When analyzed with the addition of ethyl acetate and/or L-serine, both protein and lipid signal intensities and S/N ratios were improved. We also observed that some lipids, especially those carrying a phosphocholine headgroup, formed serine adducts making them detectable in the negative mode without the use of acidic modifiers which can disrupt histology results. This makes L-serine a potentially useful additive in experiments where histological analysis is required from the same tissue sample previously analyzed by DESI-MS.

Toxic Chemical and Biological Agents

Toxic Chemical and Biological Agents PDF Author: Giovanni Sindona
Publisher: Springer Nature
ISBN: 940242041X
Category : Science
Languages : en
Pages : 282

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Book Description
This book critically assesses the current state of knowledge on new and important detection technologies, e.g. mass spectrometry, tandem mass spectrometry, biosensor detection and tissue imaging, in connection with toxic chemical and biological agents. In general, the main topics discussed concern the risks and consequences of chemical and biological agents for human health in general, with special emphasis on all biochemical and metabolic pathways including the reproductive system. The exposome, genetic risks and the environment, various health hazard agents, risk assessment, environmental assessment and preparedness, and analysis of sub-lethal effects at the molecular level are also discussed. In closing, the book provides comprehensive information on the diagnosis of exposure, and on health concerns related to toxic chemical and biological agents.

Mass Spectrometry, An Issue of Clinics in Laboratory Medicine

Mass Spectrometry, An Issue of Clinics in Laboratory Medicine PDF Author: Nigel Clarke
Publisher: Elsevier Health Sciences
ISBN: 1455712019
Category : Medical
Languages : en
Pages : 104

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Book Description
This issue of Clinics in Laboratory Medicine, Guest Edited by Nigel Clarke, MD, and Andrew Hoofnagle, MD, will focus on Mass Spectrometry, with topics including: Proteins; Peptides; Small Molecules: Toxicology; Small Molecules: Diagnostics; and Regulatory Considerations.

Peptidomics

Peptidomics PDF Author: Mikhail Soloviev
Publisher: John Wiley & Sons
ISBN: 0470196491
Category : Science
Languages : en
Pages : 432

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Book Description
The definitive guide to peptidomics- a hands-on lab reference The first truly comprehensive book about peptidomics for protein and peptide analysis, this reference provides a detailed description of the hows and whys of peptidomics and how the techniques have evolved. With chapters contributed by leading experts, it covers naturally occurring peptides, peptidomics methods and new developments, and the peptidomics approach to biomarker discovery. Explaining both the principles and the applications, Peptidomics: Methods and Applications: * Features examples of applications in diverse fields, including pharmaceutical science, toxicity biomarkers, and neuroscience * Details the successful peptidomic analyses of biological material ranging from plants to mammals * Describes a cross section of analytical techniques, including traditional methodologies, emerging trends, and new techniques for high throughput approaches An enlightening reference for experienced professionals, this book is sufficiently detailed to serve as a step-by-step guide for beginning researchers and an excellent resource for students taking biotechnology and proteomics courses. It is an invaluable reference for protein chemists and biochemists, professionals and researchers in drug and biopharmaceutical development, analytical and bioanalytical chemists, toxicologists, and others.

Advancements of Mass Spectrometry in Biomedical Research

Advancements of Mass Spectrometry in Biomedical Research PDF Author: Alisa G. Woods
Publisher: Springer
ISBN: 9783319378923
Category : Science
Languages : en
Pages : 0

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Book Description
This volume explores the use of mass spectrometry for biomedical applications. Chapters focus on specific therapeutic areas such as oncology, infectious disease and psychiatry. Additional chapters focus on methodology as well as new technologies and instrumentation. This volume provides readers with a comprehensive and informative manual that will allow them to appreciate mass spectrometry and proteomic research but also to initiate and improve their own work. Thus the book acts as a technical guide but also a conceptual guide to the newest information in this exciting field. Mass spectrometry is the central tool used in proteomic research today and is rapidly becoming indispensable to the biomedical scientist. With the completion of the human genome project and the genomic revolution, the proteomic revolution has followed closely behind. Understanding the human proteome has become critical to basic and clinical biomedical research and holds the promise of providing comprehensive understanding of human physiological processes. In addition, proteomics and mass spectrometry are bringing unprecedented biomarker discovery and are helping to personalize medicine.

Practical Algorithms in Pediatric Endocrinology

Practical Algorithms in Pediatric Endocrinology PDF Author: Z. Hochberg
Publisher: Karger Medical and Scientific Publishers
ISBN: 380558220X
Category : Medical
Languages : en
Pages : 117

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Book Description
A Karger 'Publishing Highlights 1890-2015' title Algorithms provide a logical, concise and cost-effective approach to medical reasoning: utilizing a concise, step-by-step approach based upon clues from the history, physical examination and laboratory studies, algorithms help avoid excessive unnecessary procedures and testing. The 2nd, revised edition of Practical Algorithms in Pediatric Endocrinology deals with practical issues of child growth, puberty, diseases of the endocrine glands, sexual differentiation, as well as aberrations of water, electrolyte, mineral and carbohydrate metabolism. Fifty clinical issues are covered by an algorithmic approach, breaking down long lists and tables of differential diagnosis into smaller, more manageable ones. Common clinical symptoms, signs and laboratory abnormalities are classified as they present themselves at the patient's bedside. This book is aimed at general practitioners and pediatricians, in particular those who are not exposed to pediatric endocrine problems on a daily basis, and at trainees in endocrinology and pediatric endocrinology as they acquire familiarity with clinical problem solving to make rational choices when facing clinical dilemmas.

Premature and Congenitally Diseased Infants

Premature and Congenitally Diseased Infants PDF Author: Julius H. Hess
Publisher:
ISBN:
Category : Abnormalities, Human
Languages : en
Pages : 408

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Book Description
Hess founded the first premature infant center in the United States at Michael Reese Hospital in Chicago. This is the first book written dealing only with premature and congenitally diseased infants.

Handbook of Nanoscopy

Handbook of Nanoscopy PDF Author: Gustaaf van Tendeloo
Publisher: John Wiley & Sons
ISBN: 3527641874
Category : Technology & Engineering
Languages : en
Pages : 1484

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Book Description
This completely revised successor to the Handbook of Microscopy supplies in-depth coverage of all imaging technologies from the optical to the electron and scanning techniques. Adopting a twofold approach, the book firstly presents the various technologies as such, before going on to cover the materials class by class, analyzing how the different imaging methods can be successfully applied. It covers the latest developments in techniques, such as in-situ TEM, 3D imaging in TEM and SEM, as well as a broad range of material types, including metals, alloys, ceramics, polymers, semiconductors, minerals, quasicrystals, amorphous solids, among others. The volumes are divided between methods and applications, making this both a reliable reference and handbook for chemists, physicists, biologists, materials scientists and engineers, as well as graduate students and their lecturers.

Mass Spectrometry Imaging

Mass Spectrometry Imaging PDF Author: Stanislav S. Rubakhin
Publisher: Humana Press
ISBN: 9781607617457
Category : Science
Languages : en
Pages : 0

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Book Description
Mass spectrometry (MS) offers unmatched capabilities for the detection, characterization, and identification of a broad range of analytes. Mass spectrometry imaging (MSI) integrates MS data with information on the spatial distributions of the analytes, further enhancing the applicability of MS. In Mass Spectrometry Imaging: Principles and Protocols, expert practitioners from academia, industry, and the clinic contribute cutting-edge protocols describing the application of MSI to investigations of analyte localization in a variety of specimens, from microorganisms to plant and animal tissues. Divided into three sections, this volume presents the principles of MS, current and future trends of MSI, and qualitative and quantitative protocols to measure and identify endogenous metabolites and xenobiotics. An array of MSI approaches and technologies for characterizing peptide and protein distributions are described in detail. Written in the highly successful Methods in Molecular BiologyTM series format, protocol chapters include introductions to their respective topics, lists of the necessary materials and reagents, and step-by-step, readily reproducible laboratory procedures. Also included are notes providing tips to avoid experimental pitfalls and helpful suggestions for method troubleshooting. Comprehensive and up-to-date, Mass Spectrometry Imaging: Principles and Protocols is written for scientists, biological and chemical engineers, and clinicians who are interested in applying MSI in their work and those who would benefit from having detailed experimental guidelines available in a single, convenient source.

Brain Tumor Immunotherapy

Brain Tumor Immunotherapy PDF Author: Linda M. Liau
Publisher: Springer Science & Business Media
ISBN: 1592590357
Category : Medical
Languages : en
Pages : 369

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Book Description
An authoritative panel of researchers and clinicians critically reviews the entire field to provide a comprehensive guide to modern brain tumor immunotherapy and thereby enhance future research in this area. The contributors detail many of the key laboratory experiments and clinical protocols that are currently being investigated, integrate the available information from previous and ongoing research, and help define the current status of the field. Topics range from adoptive cellular and antibody-mediated immunotherapy of brain tumors to tumor vaccines and related strategies, and include many vanguard experimental strategies and immunological techniques for studying brain tumor immunotherapy. Cutting-edge and comprehensive, Brain Tumor Immunotherapy brings together all the important recent advances in our understanding of central nervous system tumor immunology and illustrates in powerful detail the many new applications now harnessing the immune response for brain tumor therapeutics.