RNA Modifications and Epitranscriptomics

RNA Modifications and Epitranscriptomics PDF Author: Xiao Han
Publisher: Frontiers Media SA
ISBN: 2889761061
Category : Science
Languages : en
Pages : 387

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Book Description

RNA Modifications and Epitranscriptomics

RNA Modifications and Epitranscriptomics PDF Author: Xiao Han
Publisher: Frontiers Media SA
ISBN: 2889761061
Category : Science
Languages : en
Pages : 387

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Book Description


Epitranscriptomics

Epitranscriptomics PDF Author: Stefan Jurga
Publisher: Springer Nature
ISBN: 3030716120
Category : Science
Languages : en
Pages : 632

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Book Description
This book reviews a novel and exciting field of cellular and molecular biology called epitranscriptomics, which focuses on changes in an organism’s cells resulting from the posttranscriptional modification of cellular RNA. RNA-binding proteins (RBPs) play a crucial role in these posttranscriptional modifications and also support several cellular processes necessary for maintaining RNA homeostasis. Exploring the mechanisms underlying RNA modifications and RBP function is an emerging area of biomedical research, taking the study of gene regulation a step beyond epigenetics. This book reveals that the RNA molecule is not just an information-carrying molecule with some secondary structures. Accordingly, how RNA is modified, regulated, packaged, and controlled is an important aspect. Leading experts address questions such as where the over 170 distinct posttranscriptional RNA modifications are located on the genome, what percentage of mRNAs and noncoding RNAs these modifications include, and how an RNA modification impacts a person’s biology. In closing, the book reviews the role of RNA modifications and RBPs in a variety of diseases and their pathogenesis. Addressing some of the most exciting challenges in epitranscriptomics, this book provides a valuable and engaging resource for researchers in academia and industry studying the phenomena of RNA modification.

RNA modifications and epitranscriptomics - volume II

RNA modifications and epitranscriptomics - volume II PDF Author: Giovanni Nigita
Publisher: Frontiers Media SA
ISBN: 2832527779
Category : Science
Languages : en
Pages : 208

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Computational Epitranscriptomics: Bioinformatic Approaches for the Analysis of RNA Modifications

Computational Epitranscriptomics: Bioinformatic Approaches for the Analysis of RNA Modifications PDF Author: Mattia Pelizzola
Publisher: Frontiers Media SA
ISBN: 2889664406
Category : Science
Languages : en
Pages : 155

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Book Description


Epitranscriptomics: The Novel RNA Frontier

Epitranscriptomics: The Novel RNA Frontier PDF Author: Giovanni Nigita
Publisher: Frontiers Media SA
ISBN: 2889457419
Category :
Languages : en
Pages : 127

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Book Description
Following the formulation of the central dogma of molecular biology and the later discovery of classes of non-coding RNAs, the primary focus of Genetics was essentially on variation of DNA aiming at elucidating biological pathways perturbed in diseases. Recently, extensive attention has shifted towards the study of posttranscriptional RNA modifications occurring in both protein-coding as well as non-coding RNAs, revealing a novel and finer layer of complexity in gene regulation. This, in turn, has led to the birth of the novel field of ‘Epitranscriptomics’. The recent increase of applications of high-throughput sequencing technology (HTS) has allowed the unprecedented opportunity to identify on a transcriptome-wide scale, millions of RNA modifications in human genes, counting today more than 140 distinct types such as: methylation (e.g. m6A, m1A, m5C, hm5C, 2’OMe) methylation (e.g. m6A, m1A, m5C, hm5C, 2’OMe), pseudourylation (?), deamination (e.g. A-to-I RNA editing). The scope of this Research Topic was to collect both reviews and research articles addressing the wet lab approaches and bioinformatics methodologies necessary to aid in the identification of novel RNA modifications and characterization of their biological functions. Among the articles embracing the aim of the Research Topic, we have collected four original research and methods articles, five reviews, and a technology article.

DNA and RNA Modification Enzymes

DNA and RNA Modification Enzymes PDF Author: Henri Grosjean
Publisher: CRC Press
ISBN: 1498713157
Category : Science
Languages : en
Pages : 682

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Book Description
This volume is a timely and comprehensive description of the many facets of DNA and RNA modification-editing processes and to some extent repair mechanisms. Each chapter offers fundamental principles as well as up to date information on recent advances in the field (up to end 2008). They ended by a shortconclusion and future prospect' section and

Epigenetics in Plants of Agronomic Importance: Fundamentals and Applications

Epigenetics in Plants of Agronomic Importance: Fundamentals and Applications PDF Author: Raúl Alvarez-Venegas
Publisher: Springer
ISBN: 3319079719
Category : Science
Languages : en
Pages : 158

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Book Description
Over the past decades, chromatin remodelling has emerged as an important regulator of gene expression and plant defense. This book provides a detailed understanding of the epigenetic mechanisms involved in plants of agronomic importance. The information presented here is significant because it is expected to provide the knowledge needed to develop in the future treatments to manipulate and selectively activate/inhibit proteins and metabolic pathways to counter pathogens, to treat important diseases and to increase crop productivity. New approaches of this kind and the development of new technologies will certainly increase our knowledge of currently known post-translational modifications and facilitate the understanding of their roles in, for example, host-pathogen interactions and crop productivity. Furthermore, we provide important insight on how the plant epigenome changes in response to developmental or environmental stimuli, how chromatin modifications are established and maintained, to which degree they are used throughout the genome, and how chromatin modifications influence each another.

Epitranscriptomics

Epitranscriptomics PDF Author: Narendra Wajapeyee
Publisher:
ISBN: 9781493988082
Category : Transcription factors
Languages : en
Pages : 298

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Book Description


Stem Cell Epigenetics

Stem Cell Epigenetics PDF Author:
Publisher: Academic Press
ISBN: 0128140860
Category : Medical
Languages : en
Pages : 320

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Book Description
Growing evidence suggests that epigenetic mechanisms play a central role in stem cell biology and are vital for determining gene expression during cellular differentiation and governing mammalian development. In Stem Cell Epigenetics, leading international researchers examine how chromatin regulation and bona fide epigenetic mechanisms underlie stem cell renewal and differentiation. Authors also explore how the diversity of cell types, including the extent revealed by single cell omic approaches, is achieved, and how such processes may be reversed or managed via epigenetic reprogramming. Topics discussed include chromatin in pluripotency, stem cells and DNA methylation, histone modifications in stem cells and differentiation, higher-order chromatin conformation in pluripotent cells, stem cells and cancer, epigenetics and disease modeling, brain organoids from pluripotent cells, transcriptional regulation in stem cells and differentiation, non-coding RNAs in pluripotency and early differentiation, and diseases caused by epigenetic alterations in stem cells. Additionally, the book discusses the potential implementation of stem cell epigenetics in drug discovery, regenerative medicine, and disease treatment. Stem Cell Epigenetics will provide researchers and physicians with a state-of-the-art map to orient across the frontiers of this fast-evolving field. Analyzes the role of epigenetics in embryonic stem cell regulation Indicates the epigenetic mechanisms involved in stem cell differentiation and highlights modifications and misregulations that may result in disease pathogenesis Examines the potential applications of stem cell epigenetics in therapeutic disease interventions and regenerative medicine, providing a foundation for researchers and physicians to bring this exciting and fast-evolving field into a clinical setting Features chapter contributions by leading international experts

RNA Modifications

RNA Modifications PDF Author: Mary McMahon
Publisher:
ISBN: 9781071613740
Category : Electronic books
Languages : en
Pages : 427

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Book Description
This detailed book describes some of the most recent advances and up-to-date methodologies to detect, quantify, analyze, and elucidate the biological function of different types of RNA modifications. Importantly, the methodologies and tools described herein can be applied to a wide variety of organisms and can be used to address biological and clinical questions. Beginning with a section on bioinformatics tools, the collection continues with sections on detecting RNA modifications using Nanopore direct RNA sequencing, next-generation sequencing approaches, qPCR- and molecular biology-based methods, mass spectrometry- and NMR-based methods, as well as approaches to assess kinetics, determinants, and functions of RNA modifications. Written for the highly successful Methods in Molecular Biology series style, chapters include introduction to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, RNA Modifications: Methods and Protocols serves as an ideal guide for those working directly in the fields of epitranscriptomics and post-transcriptional gene regulation, as well as for scientists and clinicians interested in bioinformatic tools to study RNA modifications and techniques to dissect their roles in physiology and disease. Chapter 20 is available open access under a CC BY 4.0 license.