Assessing the Efficiency of Phenotypic and Molecular Genotype Selection Methods for Complex Traits in Soybean

Assessing the Efficiency of Phenotypic and Molecular Genotype Selection Methods for Complex Traits in Soybean PDF Author: Catherine Nyaguthii Nyinyi
Publisher:
ISBN:
Category :
Languages : en
Pages : 113

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Book Description
Soybean [Glycine max (L.) Merrill] is an important source of protein and oil for both nutritional and industrial applications. Increasing seed yield and protein concentration is the main goal of many soybean breeders to meet market demands. Soybean breeders have occasionally succeeded in producing high yielding cultivars with increased protein content using conventional means despite the negative correlation that exists between these two traits. The efficiency of breeding for seed yield and protein concentration improvement in soybean could be increased using marker assisted selection (MAS) breeding strategies to select genotypes containing favorable alleles for faster cultivar development. The objective of this study was to identify quantitative trait loci (QTL) associated with seed yield, and separately, seed protein concentration and then compare phenotypic selection (PHE) and MAS approaches for seed yield and protein concentration improvement. Two hundred and eighty two F5 derived recombinant inbred lines (RILs) were developed from a cross of Essex [centered x, actual symbol not reproducible] Williams 82 and genotyped with 1586 single nucleotide polymorphism (SNP) markers. The population was divided by days to maturity (10 days) into three tests (early, mid and late) each with 94 genotypes, with one genotype overlapping in maturity in the mid and late tests. In 2009, the three tests, parents and checks were grown in a randomized complete block design (RCBD) in: Fayetteville, AR; Harrisburg, IL and, Knoxville, TN replicated three times, and evaluated for seed yield and protein concentration. Data were combined within each test across three locations and analyzed using the MIXED procedure of SAS to determine that there were significant genotypic differences among RILs. Composite interval mapping (CIM) detected nine seed yield and ten protein concentration QTL which may be good candidates for MAS as they were environmentally stable. Selections to compare PHE, and MAS for seed yield and protein concentration provided 8 replicated field tests in four relative maturity groups grown in a RCBD replicated three times in three locations in Tennessee, in 2010. We demonstrated that both MAS and PHE may be used to select quantitative traits; however, more studies are required to optimize MAS for quantitative trait improvement.

Assessing the Efficiency of Phenotypic and Molecular Genotype Selection Methods for Complex Traits in Soybean

Assessing the Efficiency of Phenotypic and Molecular Genotype Selection Methods for Complex Traits in Soybean PDF Author: Catherine Nyaguthii Nyinyi
Publisher:
ISBN:
Category :
Languages : en
Pages : 113

Get Book Here

Book Description
Soybean [Glycine max (L.) Merrill] is an important source of protein and oil for both nutritional and industrial applications. Increasing seed yield and protein concentration is the main goal of many soybean breeders to meet market demands. Soybean breeders have occasionally succeeded in producing high yielding cultivars with increased protein content using conventional means despite the negative correlation that exists between these two traits. The efficiency of breeding for seed yield and protein concentration improvement in soybean could be increased using marker assisted selection (MAS) breeding strategies to select genotypes containing favorable alleles for faster cultivar development. The objective of this study was to identify quantitative trait loci (QTL) associated with seed yield, and separately, seed protein concentration and then compare phenotypic selection (PHE) and MAS approaches for seed yield and protein concentration improvement. Two hundred and eighty two F5 derived recombinant inbred lines (RILs) were developed from a cross of Essex [centered x, actual symbol not reproducible] Williams 82 and genotyped with 1586 single nucleotide polymorphism (SNP) markers. The population was divided by days to maturity (10 days) into three tests (early, mid and late) each with 94 genotypes, with one genotype overlapping in maturity in the mid and late tests. In 2009, the three tests, parents and checks were grown in a randomized complete block design (RCBD) in: Fayetteville, AR; Harrisburg, IL and, Knoxville, TN replicated three times, and evaluated for seed yield and protein concentration. Data were combined within each test across three locations and analyzed using the MIXED procedure of SAS to determine that there were significant genotypic differences among RILs. Composite interval mapping (CIM) detected nine seed yield and ten protein concentration QTL which may be good candidates for MAS as they were environmentally stable. Selections to compare PHE, and MAS for seed yield and protein concentration provided 8 replicated field tests in four relative maturity groups grown in a RCBD replicated three times in three locations in Tennessee, in 2010. We demonstrated that both MAS and PHE may be used to select quantitative traits; however, more studies are required to optimize MAS for quantitative trait improvement.

The Soybean Genome

The Soybean Genome PDF Author: Henry T. Nguyen
Publisher: Springer
ISBN: 3319641980
Category : Science
Languages : en
Pages : 216

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Book Description
This book examines the application of soybean genome sequences to comparative, structural, and functional genomics. Since the availability of the soybean genome sequence has revolutionized molecular research on this important crop species, the book also describes how the genome sequence has shaped research on transposon biology and applications for gene identification, tilling and positional gene cloning. Further, the book shows how the genome sequence influences research in the areas of genetic mapping, marker development, and genome-wide association mapping for identifying important trait genes and soybean breeding. In closing, the economic and botanical aspects of the soybean are also addressed.

Safety of Genetically Engineered Foods

Safety of Genetically Engineered Foods PDF Author: National Research Council
Publisher: National Academies Press
ISBN: 0309166152
Category : Science
Languages : en
Pages : 254

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Book Description
Assists policymakers in evaluating the appropriate scientific methods for detecting unintended changes in food and assessing the potential for adverse health effects from genetically modified products. In this book, the committee recommended that greater scrutiny should be given to foods containing new compounds or unusual amounts of naturally occurring substances, regardless of the method used to create them. The book offers a framework to guide federal agencies in selecting the route of safety assessment. It identifies and recommends several pre- and post-market approaches to guide the assessment of unintended compositional changes that could result from genetically modified foods and research avenues to fill the knowledge gaps.

Neural Networks in Finance and Investing

Neural Networks in Finance and Investing PDF Author: Robert R. Trippi
Publisher: Irwin Professional Publishing
ISBN:
Category : Business & Economics
Languages : en
Pages : 872

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Book Description
This completely updated version of the classic first edition offers a wealth of new material reflecting the latest developments in teh field. For investment professionals seeking to maximize this exciting new technology, this handbook is the definitive information source.

Genotype by Environment Interaction

Genotype by Environment Interaction PDF Author: Manjit S. Kang
Publisher: CRC-Press
ISBN: 9780849340031
Category : Science
Languages : en
Pages : 416

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Book Description
Genotype-by-Environment Interaction (GEI) is a prevalent issue among crop farmers, plant breeders, geneticists, and production agronomists. This book brings together contributions from expert plant breeders and quantitative geneticists to better understand the relationship between crop performance and environment. This information can reduce the cost of extensive genotype evaluation by eliminating unnecessary testing sites and by fine-tuning breeding programs. Molecular aspects of GEI are discussed for the first time and key bibliographical references on GEI are included in an appendix.

Genetically Engineered Crops

Genetically Engineered Crops PDF Author: National Academies of Sciences, Engineering, and Medicine
Publisher: National Academies Press
ISBN: 0309437385
Category : Science
Languages : en
Pages : 607

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Book Description
Genetically engineered (GE) crops were first introduced commercially in the 1990s. After two decades of production, some groups and individuals remain critical of the technology based on their concerns about possible adverse effects on human health, the environment, and ethical considerations. At the same time, others are concerned that the technology is not reaching its potential to improve human health and the environment because of stringent regulations and reduced public funding to develop products offering more benefits to society. While the debate about these and other questions related to the genetic engineering techniques of the first 20 years goes on, emerging genetic-engineering technologies are adding new complexities to the conversation. Genetically Engineered Crops builds on previous related Academies reports published between 1987 and 2010 by undertaking a retrospective examination of the purported positive and adverse effects of GE crops and to anticipate what emerging genetic-engineering technologies hold for the future. This report indicates where there are uncertainties about the economic, agronomic, health, safety, or other impacts of GE crops and food, and makes recommendations to fill gaps in safety assessments, increase regulatory clarity, and improve innovations in and access to GE technology.

Genetic Data Analysis for Plant and Animal Breeding

Genetic Data Analysis for Plant and Animal Breeding PDF Author: Fikret Isik
Publisher: Springer
ISBN: 3319551779
Category : Science
Languages : en
Pages : 409

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Book Description
This book fills the gap between textbooks of quantitative genetic theory, and software manuals that provide details on analytical methods but little context or perspective on which methods may be most appropriate for a particular application. Accordingly this book is composed of two sections. The first section (Chapters 1 to 8) covers topics of classical phenotypic data analysis for prediction of breeding values in animal and plant breeding programs. In the second section (Chapters 9 to 13) we provide the concept and overall review of available tools for using DNA markers for predictions of genetic merits in breeding populations. With advances in DNA sequencing technologies, genomic data, especially single nucleotide polymorphism (SNP) markers, have become available for animal and plant breeding programs in recent years. Analysis of DNA markers for prediction of genetic merit is a relatively new and active research area. The algorithms and software to implement these algorithms are changing rapidly. This section represents state-of-the-art knowledge on the tools and technologies available for genetic analysis of plants and animals. However, readers should be aware that the methods or statistical packages covered here may not be available or they might be out of date in a few years. Ultimately the book is intended for professional breeders interested in utilizing these tools and approaches in their breeding programs. Lastly, we anticipate the usage of this volume for advanced level graduate courses in agricultural and breeding courses.

Intelligent Computing Theories and Application

Intelligent Computing Theories and Application PDF Author: De-Shuang Huang
Publisher: Springer
ISBN: 3319422944
Category : Computers
Languages : en
Pages : 924

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Book Description
This two-volume set LNCS 9771 and LNCS 9772 constitutes - in conjunction with the volume LNAI 9773 - the refereed proceedings of the 12th International Conference on Intelligent Computing, ICIC 2016, held in Lanzhou, China, in August 2016. The 221 full papers and 15 short papers of the three proceedings volumes were carefully reviewed and selected from 639 submissions. The papers are organized in topical sections such as signal processing and image processing; information security, knowledge discovery, and data mining; systems biology and intelligent computing in computational biology; intelligent computing in scheduling; information security; advances in swarm intelligence: algorithms and applications; machine learning and data analysis for medical and engineering applications; evolutionary computation and learning; independent component analysis; compressed sensing, sparse coding; social computing; neural networks; nature inspired computing and optimization; genetic algorithms; signal processing; pattern recognition; biometrics recognition; image processing; information security; virtual reality and human-computer interaction; healthcare informatics theory and methods; artificial bee colony algorithms; differential evolution; memetic algorithms; swarm intelligence and optimization; soft computing; protein structure and function prediction; advances in swarm intelligence: algorithms and applications; optimization, neural network, and signal processing; biomedical informatics and image processing; machine learning; knowledge discovery and natural language processing; nature inspired computing and optimization; intelligent control and automation; intelligent data analysis and prediction; computer vision; knowledge representation and expert system; bioinformatics.

GGE Biplot Analysis

GGE Biplot Analysis PDF Author: Weikai Yan
Publisher: CRC Press
ISBN: 1420040375
Category : Mathematics
Languages : en
Pages : 287

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Book Description
Research data is expensive and precious, yet it is seldom fully utilized due to our ability of comprehension. Graphical display is desirable, if not absolutely necessary, for fully understanding large data sets with complex interconnectedness and interactions. The newly developed GGE biplot methodology is a superior approach to the graphical analys

Plant Breeding: Past, Present and Future

Plant Breeding: Past, Present and Future PDF Author: John E. Bradshaw
Publisher: Springer
ISBN: 3319232851
Category : Science
Languages : en
Pages : 710

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Book Description
This book aims to help plant breeders by reviewing past achievements, currently successful practices, and emerging methods and techniques. Theoretical considerations are also presented to strike the right balance between being as simple as possible but as complex as necessary. The United Nations predicts that the global human population will continue rising to 9.0 billion by 2050. World food production will need to increase between 70-100 per cent in just 40 years. First generation bio-fuels are also using crops and cropland to produce energy rather than food. In addition, land area used for agriculture may remain static or even decrease as a result of degradation and climate change, despite more land being theoretically available, unless crops can be bred which tolerate associated abiotic stresses. Lastly, it is unlikely that steps can be taken to mitigate all of the climate change predicted to occur by 2050, and beyond, and hence adaptation of farming systems and crop production will be required to reduce predicted negative effects on yields that will occur without crop adaptation. Substantial progress will therefore be required in bridging the yield gap between what is currently achieved per unit of land and what should be possible in future, with the best farming methods and best storage and transportation of food, given the availability of suitably adapted cultivars, including adaptation to climate change. My book is divided into four parts: Part I is an historical introduction; Part II deals with the origin of genetic variation by mutation and recombination of DNA; Part III explains how the mating system of a crop species determines the genetic structure of its landraces; Part IV considers the three complementary options for future progress: use of sexual reproduction in further conventional breeding, base broadening and introgression; mutation breeding; and genetically modified crops.