Virome: Diversity, Function and Ecology

Virome: Diversity, Function and Ecology PDF Author: Tao Jin
Publisher: Frontiers Media SA
ISBN: 2832503977
Category : Science
Languages : en
Pages : 155

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Book Description

Virome: Diversity, Function and Ecology

Virome: Diversity, Function and Ecology PDF Author: Tao Jin
Publisher: Frontiers Media SA
ISBN: 2832503977
Category : Science
Languages : en
Pages : 155

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Book Description


The New Science of Metagenomics

The New Science of Metagenomics PDF Author: National Research Council
Publisher: National Academies Press
ISBN: 0309106761
Category : Science
Languages : en
Pages : 170

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Book Description
Although we can't usually see them, microbes are essential for every part of human life-indeed all life on Earth. The emerging field of metagenomics offers a new way of exploring the microbial world that will transform modern microbiology and lead to practical applications in medicine, agriculture, alternative energy, environmental remediation, and many others areas. Metagenomics allows researchers to look at the genomes of all of the microbes in an environment at once, providing a "meta" view of the whole microbial community and the complex interactions within it. It's a quantum leap beyond traditional research techniques that rely on studying-one at a time-the few microbes that can be grown in the laboratory. At the request of the National Science Foundation, five Institutes of the National Institutes of Health, and the Department of Energy, the National Research Council organized a committee to address the current state of metagenomics and identify obstacles current researchers are facing in order to determine how to best support the field and encourage its success. The New Science of Metagenomics recommends the establishment of a "Global Metagenomics Initiative" comprising a small number of large-scale metagenomics projects as well as many medium- and small-scale projects to advance the technology and develop the standard practices needed to advance the field. The report also addresses database needs, methodological challenges, and the importance of interdisciplinary collaboration in supporting this new field.

Studies in Viral Ecology, Volume 1

Studies in Viral Ecology, Volume 1 PDF Author: Christon J. Hurst
Publisher: John Wiley & Sons
ISBN: 1118025652
Category : Science
Languages : en
Pages : 389

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Book Description
This book explains the ecology of viruses by examining their interactive dynamics with their hosting species (in this volume, in microbes and plants), including the types of transmission cycles that viruses have evolved encompassing principal and alternate hosts, vehicles, and vectoring species. Examining virology from an organismal biology approach and focusing on the concept that viral infections represent areas of overlap in the ecologies of the involved species, Viral Ecology is essential for students and professionals who either may be non-virologists or virologists whose previous familiarity has been very specialized.

Biodiversity and Ecosystem Function

Biodiversity and Ecosystem Function PDF Author: Ernst-Detlef Schulze
Publisher: Springer Science & Business Media
ISBN: 9783540581031
Category : Business & Economics
Languages : en
Pages : 562

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Book Description
With the accelerating loss of biodiversity there is increasing concern about how this loss may be affecting ecosystem processes, or services, that are of benefit to human well being. The limited studies that address the principal question directly, species numbers versus system function, are evaluated. Moreover, the degree of redundancy within systems, the ubiquity of keystone species, the tightness of species interactions from mutualisms to food webs, the resilience of systems to perturbation, the interactions of landscape units are explored, as is also how policy decisions are driven in this research area. This book brings together the disciplines of population biology and ecoysystem science, both directed toward evaluating the consequences of human-driven disruptions of natural systems.

State of the Arctic Marine Biodiversity Report

State of the Arctic Marine Biodiversity Report PDF Author: Circumpolar Biodiversity Monitoring Program
Publisher:
ISBN: 9789935431639
Category : Biodiversity
Languages : en
Pages : 0

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Book Description
« This is the first report of the Circumpolar Biodiversity Monitoring Program (CBMP) to summarize status and trends in biotic elements in the arctic marine environment. The effort has identified knowledge gaps in circumpolar biodiversity monitoring. CBMP is the cornerstone program of Conservation of Arctic Flora and Fauna (CAFF). »--

Bacteriophage Ecology

Bacteriophage Ecology PDF Author: Stephen T. Abedon
Publisher: Cambridge University Press
ISBN: 1139471945
Category : Science
Languages : en
Pages : 457

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Book Description
Bacteriophages, or phages, are viruses that infect bacteria and are believed to be the most abundant and genetically diverse organisms on Earth. As such, their ecology is vast both in quantitative and qualitative terms. Their abundance makes an understanding of phage ecology increasingly relevant to bacterial ecosystem ecology, bacterial genomics and bacterial pathology. Abedon provides the first text on phage ecology for almost 20 years. Written by leading experts, synthesizing the three key approaches to studying phage ecology, namely studying them in natural environments (in situ), experimentally in the lab, or theoretically using mathematical or computer models. With strong emphasis on microbial population biology and distilling cutting-edge research into basic principles, this book will complement other currently available volumes. It will therefore serve as an essential resource for graduate students and researchers, particularly those with an interest in phage ecology and evolutionary biology.

Microbial Ecology

Microbial Ecology PDF Author: Bhagwan Narayan Rekadwad
Publisher: CRC Press
ISBN: 1040094694
Category : Science
Languages : en
Pages : 247

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Book Description
This book highlights the hidden world of microbiomes, viromes, and biofilms on and inside humans. Our bodies have microbiomes, which contain various bacterial communities, and viromes, which contain viruses. These invisible residents are vital to health and sickness. Infections often result from microbiome imbalances. Pathogenic bacteria can outcompete beneficial ones, causing gut dysbiosis and disease. Understanding this interaction allows probiotics to restore balance and fight infections. Microbes have a major impact on the gut-brain axis. Gut bacteria affect mood, behavior, and neurodegenerative illnesses by producing neurotransmitters and influencing brain development. The "diabesity" relationship to microbiome changes underscores its relevance in metabolic illnesses like diabetes and NAFLD. The microbiota can also affect cancer progression. Specific bacterial strains may promote tumor growth or prevent metastasis, enabling microbiome-based cancer treatments. Probiotics—live bacteria—have enormous potential. Beneficial strains can improve intestinal balance, fight infections, and treat diabetes and autoimmune conditions. Fecal transplants or co-sleeping may modify microbial ecosystems and health effects. Microbiomes, viromes, and biofilms are complex, requiring advanced tools. The makeup, function, and interactions of these communities can be characterized using next-generation sequencing (NGS). As NGS technology advances, researchers explore this hidden world, offering a future where microbiome manipulation underpins customized therapy and preventive healthcare. This area has great potential for understanding health, improving well-being, and fighting diseases in innovative ways.

Biocommunication of Phages

Biocommunication of Phages PDF Author: Guenther Witzany
Publisher: Springer Nature
ISBN: 3030458857
Category : Science
Languages : en
Pages : 499

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Book Description
This is the first book to systemize all levels of communicative behavior of phages. Phages represent the most diverse inhabitants on this planet. Until today they are completely underestimated in their number, skills and competences and still remain the dark matter of biology. Phages have serious effects on global energy and nutrient cycles. Phages actively compete for host. They can distinguish between ‘self’ and ‘non-self’ (complement same, preclude others). They process and evaluate available information and then modify their behaviour accordingly. These diverse competences show us that this capacity to evaluate information is possible owing to communication processes within phages (intra-organismic), between the same, related and different phage species (interorganismic), and between phages and non-phage organisms (transorganismic). This is crucial in coordinating infection strategies (lytic vs. lysogenic) and recombination in phage genomes. In 22 chapters, expert contributors review current research into the varying forms of phage biocommunication and Phagetherapy. Biocommunication of Phages aims to assess the current state of research, to orient further investigations on how phages communicate with each other to coordinate their behavioral patterns, and to inspire further investigation of the role of non-phage viruses (non-lytic, non-prokaryotic) in these highly dynamic interactional networks.

Virus Discovery by Metagenomics: The (Im)possibilities

Virus Discovery by Metagenomics: The (Im)possibilities PDF Author: Bas E. Dutilh
Publisher: Frontiers Media SA
ISBN: 2889453081
Category : Electronic book
Languages : en
Pages : 218

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Book Description
Since the late 1800s, the discovery of new viruses was a gradual process. Viruses were described one by one using a suite of techniques such as (electron) microscopy and viral culture. Investigators were usually interested in a disease state within an organism, and expeditions in viral ecology were rare. The advent of metagenomics using high-throughput sequencing has revolutionized not only the rate of virus discovery, but also the nature of the discoveries. For example, the viral ecology and etiology of many human diseases are being characterized, non-pathogenic viral commensals are ubiquitous, and the description of environmental viromes is making progress. This Frontiers in Virology Research Topic showcases how metagenomic and bioinformatic approaches have been combined to discover, classify and characterize novel viruses.

Handbook of Molecular Microbial Ecology II

Handbook of Molecular Microbial Ecology II PDF Author: Frans J. de Bruijn
Publisher: John Wiley & Sons
ISBN: 1118010531
Category : Science
Languages : en
Pages : 632

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Book Description
The premiere two-volume reference on revelations from studying complex microbial communities in many distinct habitats Metagenomics is an emerging field that has changed the way microbiologists study microorganisms. It involves the genomic analysis of microorganisms by extraction and cloning of DNA from a group of microorganisms, or the direct use of the purified DNA or RNA for sequencing, which allows scientists to bypass the usual protocol of isolating and culturing individual microbial species. This method is now used in laboratories across the globe to study microorganism diversity and for isolating novel medical and industrial compounds. Handbook of Molecular Microbial Ecology is the first comprehensive two-volume reference to cover unculturable microorganisms in a large variety of habitats, which could not previously have been analyzed without metagenomic methodology. It features review articles as well as a large number of case studies, based largely on original publications and written by international experts. This second volume, Metagenomics in Different Habitats, covers such topics as: Viral genomes Metagenomics studies in a variety of habitats, including marine environments and lakes, soil, and human and animal digestive tracts Other habitats, including those involving microbiome diversity in human saliva and functional intestinal metagenomics; diversity of archaea in terrestrial hot springs; and microbial communities living at the surface of building stones Biodegradation Biocatalysts and natural products A special feature of this book is the highlighting of the databases and computer programs used in each study; they are listed along with their sites in order to facilitate the computer-assisted analysis of the vast amount of data generated by metagenomic studies. Such studies in a variety of habitats are described here, which present a large number of different system-dependent approaches in greatly differing habitats. Handbook of Molecular Microbial Ecology II is an invaluable reference for researchers in metagenomics, microbial ecology, microbiology, and environmental microbiology; those working on the Human Microbiome Project; microbial geneticists; and professionals in molecular microbiology and bioinformatics.