Ultrafast Molecular Dynamics of Model Biological Systems

Ultrafast Molecular Dynamics of Model Biological Systems PDF Author: Ruth A. Livingstone
Publisher:
ISBN:
Category :
Languages : en
Pages :

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Book Description
Femtosecond time resolved photoelectron imaging spectroscopy equipment was designed, constructed, and used to reveal the non-adiabatic dynamics of model biological systems. Indole and phenol derivatives were studied as models for eumelanin, a pigment found in humans designed to protect the body from ultraviolet radiation. The photo-dynamics of these molecules was studied after excitation with ultraviolet radiation, with particular emphasis on the effect that the hydroxyl groups have on the p * dissociative state. It was found that adding a hydroxyl group onto indole to create 5-hydroxyindole had little significant effect on the photodynamics at the excitation wavelengths studied. Adding a second hydroxyl group to phenol had a strongly marked effect only when the hydroxyl groups were in close proximity to each other, in which case it dramatically increased the relaxation rate. An ultrafast optical system, imaging photoelectron spectrometer, and software to control the hardware, and collect and analyse photoelectron data were successfully implemented and used to collect and analyse data. This system will be of use for many more years and will be the basis of much future research.

Ultrafast Molecular Dynamics of Model Biological Systems

Ultrafast Molecular Dynamics of Model Biological Systems PDF Author: Ruth A. Livingstone
Publisher:
ISBN:
Category :
Languages : en
Pages :

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Book Description
Femtosecond time resolved photoelectron imaging spectroscopy equipment was designed, constructed, and used to reveal the non-adiabatic dynamics of model biological systems. Indole and phenol derivatives were studied as models for eumelanin, a pigment found in humans designed to protect the body from ultraviolet radiation. The photo-dynamics of these molecules was studied after excitation with ultraviolet radiation, with particular emphasis on the effect that the hydroxyl groups have on the p * dissociative state. It was found that adding a hydroxyl group onto indole to create 5-hydroxyindole had little significant effect on the photodynamics at the excitation wavelengths studied. Adding a second hydroxyl group to phenol had a strongly marked effect only when the hydroxyl groups were in close proximity to each other, in which case it dramatically increased the relaxation rate. An ultrafast optical system, imaging photoelectron spectrometer, and software to control the hardware, and collect and analyse photoelectron data were successfully implemented and used to collect and analyse data. This system will be of use for many more years and will be the basis of much future research.

Ultrafast Phenomena in Molecular Sciences

Ultrafast Phenomena in Molecular Sciences PDF Author: Rebeca de Nalda
Publisher: Springer Science & Business Media
ISBN: 331902051X
Category : Science
Languages : en
Pages : 298

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Book Description
This book presents the latest developments in Femtosecond Chemistry and Physics for the study of ultrafast photo-induced molecular processes. Molecular systems, from the simplest H2 molecule to polymers or biological macromolecules, constitute central objects of interest for Physics, Chemistry and Biology, and despite the broad range of phenomena that they exhibit, they share some common behaviors. One of the most significant of those is that many of the processes involving chemical transformation (nuclear reorganization, bond breaking, bond making) take place in an extraordinarily short time, in or around the femtosecond temporal scale (1 fs = 10-15 s). A number of experimental approaches - very particularly the developments in the generation and manipulation of ultrashort laser pulses - coupled with theoretical progress, provide the ultrafast scientist with powerful tools to understand matter and its interaction with light, at this spatial and temporal scale. This book is an attempt to reunite some of the state-of-the-art research that is being carried out in the field of ultrafast molecular science, from theoretical developments, through new phenomena induced by intense laser fields, to the latest techniques applied to the study of molecular dynamics.

Ultrafast Dynamics at the Nanoscale

Ultrafast Dynamics at the Nanoscale PDF Author: Stefan Haacke
Publisher: CRC Press
ISBN: 9814745340
Category : Science
Languages : en
Pages : 529

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Book Description
Ultrafast Dynamics at the Nanoscale provides a combined experimental and theoretical insight into the molecular-level investigation of light-induced quantum processes in biological systems and nanostructured (bio)assemblies. Topics include DNA photostability and repair, photoactive proteins, biological and artificial light-harvesting systems, plasmonic nanostructures, and organic photovoltaic materials, whose common denominator is the key importance of ultrafast quantum effects at the border between the molecular scale and the nanoscale. The functionality and control of these systems have been under intense investigation in recent years in view of developing a detailed understanding of ultrafast nanoscale energy and charge transfer, as well as fostering novel technologies based on sustainable energy resources. Both experiment and theory have made big strides toward meeting the challenge of these truly complex systems. This book, thus, introduces the reader to cutting-edge developments in ultrafast nonlinear optical spectroscopies and the quantum dynamical simulation of the observed dynamics, including direct simulations of two-dimensional optical experiments. Taken together, these techniques attempt to elucidate whether the quantum coherent nature of ultrafast events enhances the efficiency of the relevant processes and where the quantum–classical boundary sets in, in these high-dimensional biological and material systems. The chapters contain well-illustrated accounts of the authors’ research work, including didactic introductory material, and address a multidisciplinary audience from chemistry, physics, biology, and materials sciences. The book is, therefore, a must-have for graduate- and postgraduate-level researchers who wish to learn about molecular nanoscience from a combined spectroscopic and theoretical viewpoint.

Ultrafast Phenomena in Molecular Sciences

Ultrafast Phenomena in Molecular Sciences PDF Author: Rebeca de Nalda
Publisher: Springer
ISBN: 9783319020525
Category : Science
Languages : en
Pages : 287

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Book Description
This book presents the latest developments in Femtosecond Chemistry and Physics for the study of ultrafast photo-induced molecular processes. Molecular systems, from the simplest H2 molecule to polymers or biological macromolecules, constitute central objects of interest for Physics, Chemistry and Biology, and despite the broad range of phenomena that they exhibit, they share some common behaviors. One of the most significant of those is that many of the processes involving chemical transformation (nuclear reorganization, bond breaking, bond making) take place in an extraordinarily short time, in or around the femtosecond temporal scale (1 fs = 10-15 s). A number of experimental approaches - very particularly the developments in the generation and manipulation of ultrashort laser pulses - coupled with theoretical progress, provide the ultrafast scientist with powerful tools to understand matter and its interaction with light, at this spatial and temporal scale. This book is an attempt to reunite some of the state-of-the-art research that is being carried out in the field of ultrafast molecular science, from theoretical developments, through new phenomena induced by intense laser fields, to the latest techniques applied to the study of molecular dynamics.

Femtochemistry: Ultrafast Chemical And Physical Processes In Molecular Systems

Femtochemistry: Ultrafast Chemical And Physical Processes In Molecular Systems PDF Author: Majed Chergui
Publisher: World Scientific
ISBN: 981454826X
Category :
Languages : en
Pages : 718

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Book Description
This book highlights the latest experimental and theoretical developments in the field of femtochemistry, with papers describing the physics and chemistry of ultrafast processes in small molecules, complex molecular systems, clusters, biological systems, solids, matrices, liquids and at surfaces and interfaces. The recent developments in frequency-domain studies of femtodynamics are also presented. In addition, the latest achievements in femtosecond control of chemical reactions are presented, together with the newest techniques in real-time probing of reactions such as ultrafast x-ray or electron diffraction. The papers are rich in references giving a clearcut state-of-the-art of the topics being discussed. The book should be a valuable tool to all persons in the field and to young scientists.Contributors include: A H Zewail, J Jortner, V S Letokhov, J Manz, R S Berry, C Wittig, K B Eisenthal, A W Castleman Jr., J T Hynes, W H Gadzuk, R Kosloff, S Mukamel, K R Wilson; G Fleming, D Wiersma, K Yoshihara, V Sundström, A Apkarian, N Scherer, A Myers, R Schinke, J R Huber, R B Gerber, G Gerber and P M Champion.

Ultrafast Nonlinear Optics

Ultrafast Nonlinear Optics PDF Author: Robert Thomson
Publisher: Springer Science & Business Media
ISBN: 3319000179
Category : Science
Languages : en
Pages : 385

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Book Description
The field of ultrafast nonlinear optics is broad and multidisciplinary, and encompasses areas concerned with both the generation and measurement of ultrashort pulses of light, as well as those concerned with the applications of such pulses. Ultrashort pulses are extreme events – both in terms of their durations, and also the high peak powers which their short durations can facilitate. These extreme properties make them powerful experiment tools. On one hand, their ultrashort durations facilitate the probing and manipulation of matter on incredibly short timescales. On the other, their ultrashort durations can facilitate high peak powers which can drive highly nonlinear light-matter interaction processes. Ultrafast Nonlinear Optics covers a complete range of topics, both applied and fundamental in nature, within the area of ultrafast nonlinear optics. Chapters 1 to 4 are concerned with the generation and measurement of ultrashort pulses. Chapters 5 to 7 are concerned with fundamental applications of ultrashort pulses in metrology and quantum control. Chapters 8 and 9 are concerned with ultrafast nonlinear optics in optical fibres. Chapters 10 to 13 are concerned with the applications of ultrashort pulses in areas such as particle acceleration, microscopy, and micromachining. The chapters are aimed at graduate-student level and are intended to provide the student with an accessible, self-contained and comprehensive gateway into each subject.

Femtochemistry and Femtobiology

Femtochemistry and Femtobiology PDF Author: Abderrazzak Douhal
Publisher: World Scientific
ISBN: 9810248660
Category : Science
Languages : en
Pages : 854

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Book Description
This book contains important contributions from top international scientists on the-state-of-the-art of femtochemistry and femtobiology at the beginning of the new millennium. It consists of reviews and papers on ultrafast dynamics in molecular science.The coverage of topics highlights several important features of molecular science from the viewpoint of structure (space domain) and dynamics (time domain). First of all, the book presents the latest developments, such as experimental techniques for understanding ultrafast processes in gas, condensed and complex systems, including biological molecules, surfaces and nanostructures. At the same time it stresses the different ways to control the rates and pathways of reactive events in chemistry and biology. Particular emphasis is given to biological processes as an area where femtodynamics is becoming very useful for resolving the structural dynamics from techniques such as electron diffraction, and X-ray and IR spectroscopy. Finally, the latest developments in quantum control (in both theory and experiment) and the experimental pulse-shaping techniques are described.

Femtochemistry and Femtobiology

Femtochemistry and Femtobiology PDF Author: Monique M. Martin
Publisher: Elsevier
ISBN: 0080506267
Category : Science
Languages : en
Pages : 589

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Book Description
This book reflects the heights of knowledge of ultrafast chemical processes attained in these early years of the 21st century : the latest research in femtosecond and picosecond molecular processes in Chemistry and Biology, carried out around the world, is described here in more than 110 articles. The results were presented and discussed at the VIth International Conference on Femtochemistry, in Paris, France, from July 6 to July 10, 2003. The articles published here were reviewed by referees selected from specialists in the Femtochemistry community, guaranteeing a collective responsability for the quality of the research reported in the next 564 pages. Femtochemistry is an ever-growing field, where new research areas are constantly opening up, and one which both stimulates and accompanies the development of ultrafast technologies. The increasing interest in femtobiology and chemistry at the frontier with biology is an obvious indicator of the present impact of life sciences in our society. New materials and reactions at surfaces are also some of the relatively new topics that promise rapid developments. New methodologies and technologies for probing and following in real time molecular dynamical phenomena have appeared within the last ten years or so. These methods, based on multidimensional IR spectroscopies, ultrafast X-ray and electron diffraction techniques, are well represented in this book. Of ever-improving performance, they are now applied to the characterization of structural dynamics of an increasing number of chemical and biological systems.This book reports the state of research in Femtochemistry and Femtobiology presented at Paris, at the Maison de la Chimie, in July 2003, representing the tenth anniversary of the conference. * Overview of the most recent research on ultrafast events* Application of new methodologies on chemical and biological systems* Contributions by key players in the field

QM/MM Studies of Light-responsive Biological Systems

QM/MM Studies of Light-responsive Biological Systems PDF Author: Tadeusz Andruniów
Publisher: Springer Nature
ISBN: 303057721X
Category : Science
Languages : en
Pages : 350

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Book Description
This book, a consecutive contribution to the series Challenges and Advances in Computational Chemistry and Physics, focuses on understanding the photoinduced processes in biological systems. Understanding and fine control of light fate in molecules is vital for the progress of society and environmental safety. Light induced changes of various physico-chemical and spectroscopic properties in nucleic acids and proteins is the basis of fundamental biological events such as vision, DNA photodamage or photosensing. The investigation of these processes is challenging to both theoretical and experimental studies. This volume encompasses the quantum mechanics/molecular mechanics theory in several subfields, including: advanced computational methods for nucleic acids and proteins systems; dynamics, spectroscopic and physico-chemical properties of biological photoreceptors; DNA photodamage. This book is of interest to readers in both fundamental and application-oriented research by overviewing recent achievements in computational modeling of excited states in nucleic acids and proteins.

Ultrafast Quantum Effects and Vibrational Dynamics in Organic and Biological Systems

Ultrafast Quantum Effects and Vibrational Dynamics in Organic and Biological Systems PDF Author: Sarah Elizabeth Morgan
Publisher: Springer
ISBN: 3319633996
Category : Science
Languages : en
Pages : 121

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Book Description
This thesis focuses on theoretical analysis of the sophisticated ultrafast optical experiments that probe the crucial first few picoseconds of quantum light harvesting, making an important contribution to quantum biology, an exciting new field at the intersection of condensed matter, physical chemistry and biology. It provides new insights into the role of vibrational dynamics during singlet fission of organic pentacene thin films, and targeting the importance of vibrational dynamics in the design of nanoscale organic light harvesting devices, it also develops a new wavelet analysis technique to probe vibronic dynamics in time-resolved nonlinear optical experiments. Lastly, the thesis explores the theory of how non-linear “breather” vibrations are excited and propagate in the disordered nanostructures of photosynthetic proteins.