The Pineapple Genome and the Evolution of CAM Photosynthesis PDF Download
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Category :
Languages : en
Pages : 8
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Book Description
Pineapple (Ananas comosus (L.) Merr.) is the most economically valuable crop possessing crassulacean acid metabolism (CAM), a photosynthetic carbon assimilation pathway with high water-use efficiency, and the second most important tropical fruit. We sequenced the genomes of pineapple varieties F153 and MD2 and a wild pineapple relative, Ananas bracteatus accession CB5. The pineapple genome has one fewer ancient whole-genome duplication event than sequenced grass genomes and a conserved karyotype with seven chromosomes from before the [rho] duplication event. The pineapple lineage has transitioned from C3 photosynthesis to CAM, with CAM-related genes exhibiting a diel expression pattern in photosynthetic tissues. CAM pathway genes were enriched with cis-regulatory elements associated with the regulation of circadian clock genes, providing the first cis-regulatory link between CAM and circadian clock regulation. Pineapple CAM photosynthesis evolved by the reconfiguration of pathways in C3 plants, through the regulatory neofunctionalization of preexisting genes and not through the acquisition of neofunctionalized genes via whole-genome or tandem gene duplication.
Author:
Publisher:
ISBN:
Category :
Languages : en
Pages : 8
Get Book Here
Book Description
Pineapple (Ananas comosus (L.) Merr.) is the most economically valuable crop possessing crassulacean acid metabolism (CAM), a photosynthetic carbon assimilation pathway with high water-use efficiency, and the second most important tropical fruit. We sequenced the genomes of pineapple varieties F153 and MD2 and a wild pineapple relative, Ananas bracteatus accession CB5. The pineapple genome has one fewer ancient whole-genome duplication event than sequenced grass genomes and a conserved karyotype with seven chromosomes from before the [rho] duplication event. The pineapple lineage has transitioned from C3 photosynthesis to CAM, with CAM-related genes exhibiting a diel expression pattern in photosynthetic tissues. CAM pathway genes were enriched with cis-regulatory elements associated with the regulation of circadian clock genes, providing the first cis-regulatory link between CAM and circadian clock regulation. Pineapple CAM photosynthesis evolved by the reconfiguration of pathways in C3 plants, through the regulatory neofunctionalization of preexisting genes and not through the acquisition of neofunctionalized genes via whole-genome or tandem gene duplication.
Author: Ray Ming
Publisher: Springer
ISBN: 303000614X
Category : Science
Languages : en
Pages : 281
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Book Description
This book is the first comprehensive volume on the genetics and genomics of pineapple and provides an overview of the current state of pineapple research. Pineapple [Ananas comosus (L.) Merr.] is the second most important tropical fruit after banana in term of international trade. Its features are advantageous for genomic research: it has a small genome of 527 Mb which is diploid and vegetatively propagated; it is monocot, closely related to the grass family that includes major cereal crops, wheat, rice, corn, sorghum, and millet; and it serves as an out group for genetic and genomic research in grasses. In addition to exploring the evolution and improvement of pineapple, this work examines the pineapple genome with respect to genome structure and organization, comparative analyses with other angiosperm genomes, transcription factors, disease resistance, and circadian clock regulation of CAM related genes. With chapters covering botanical, genetic, genomic, and applied aspects of pineapple, this text also encourages the application of genomic technologies and suggests future prospects.
Author: Alejandro Pereira-Santana
Publisher: Springer Nature
ISBN: 1071624296
Category : Science
Languages : en
Pages : 293
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Book Description
This detailed book presents recent methodologies for the task of inspecting the genomic world of plants, extracting valuable information, and presenting it in a readable way. With a focus on bioinformatics tools, the volume explores phylogenetics and evolution, Omics analysis, as well as experimental procedures for trait characterization. Written for the highly successful Methods in Molecular Biology series, chapters include the kind of vital expert implementation advice that will lead to successful results. Authoritative and practical, Plant Comparative Genomics serves as an ideal resource for researchers looking to implement comparative tools in order to explore their genomic data for their daily scientific work.
Author: Garth M Sanewski
Publisher: CABI
ISBN: 1786393301
Category : Science
Languages : en
Pages : 353
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Book Description
Completely updated with new content and full-colour figures throughout, the second edition of this successful book continues to provide a comprehensive coverage of pineapple breeding, production and yield. Pineapple is an increasingly important crop and demand for fresh pineapple is steadily growing; stakeholders in the value chain are worldwide. The Pineapple: Botany, Production and Uses provides essential coverage from botany through to postharvest handling and provides the technical information required by all those working with the crop. The second edition: - Contains new chapters on organic production and production for other uses (fibre and ornamentals). - Includes major updates to content on taxonomy, biotechnology, cultural systems, nutrition, varieties and genetic improvement. - Explores physiological changes associated with the year-round growing of pineapple in addition to the associated cultural practices and mineral nutrition. - Considers the impacts of climate change and environmental issues on pineapple crops, and relevant mitigation strategies. - Looks at the effects of new cultivars and technologies on cultural practices and plant nutrition. Written by an international team of experts, this book is an essential resource for researchers, growers and all those involved in the pineapple industry.
Author: Klaus Winter
Publisher: Springer Science & Business Media
ISBN: 3642790607
Category : Science
Languages : en
Pages : 474
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Book Description
Crassulacean acid metabolism (CAM) represents one of the best-studied metabolic examples of an ecological adaptation to environmental stress. Well over 5 % of all vascular plant species engage in this water-conserving photosynthetic pathway. Intensified research activities over the last 10 years have led to major advances in understanding the biology of CAM plants. New areas of research reviewed in detail in this book include regulation of gene expression and the molecular basis of CAM, the ecophysiology of CAM plants from tropical environments, the productivity of agronomically important cacti and agaves, the ecophysiology of CAM in submerged aquatic plants, and the taxonomic diversity and evolutionary origins of CAM.
Author: Urs Eggli
Publisher: Springer Science & Business Media
ISBN: 3642558747
Category : Science
Languages : en
Pages : 519
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Book Description
The present volume covering the Crassulaceae marks the completion of the successful handbook series that presents a complete coverage of the so-called "other" succulents, i.e. of all taxa of suc culent plants with the exception of the Cactaceae. It is with pride that this volume is now put before the public. Together with its predecessors, it is the fruit of a truly international project. Not only does the present volume constitute the first complete synopsis of the large and horticulturally important family Crassulaceae published since the treatment by Berger (1930), but the handbook series as a whole is a landmark in succulent plant literature. The history of the project that eventually led to the publication of the present handbook series was outlined in the Preface to the Monocotyledons Volume, published in the summer of 2001. A short summary of its history will therefore suffice. Handbooks devoted to succulent plants (including cacti) have a long-standing tradition. First treatments covering the family Cactaceae were already published in the 19th century, but the first handbook dealing with the so-called "other succulents", authored by Hermann Jacobsen, was only published in 1954 - 1955, then called "Handbuch der sukkulenten Pflanzen". A revised and en larged English edition was published in 1959 and was repeatedly reprinted subsequently.
Author: Maria Gloria Lobo
Publisher: John Wiley & Sons
ISBN: 1118967380
Category : Technology & Engineering
Languages : en
Pages : 271
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Book Description
Pineapple is the third most important tropical fruit in the world, with production occurring throughout the tropics. The demand for low acid fresh pineapples and its processed products is one of the fastest growing markets, especially in Europe and North America. This book provides an in depth and contemporary coverage of knowledge and practices in the value chain of this popular fruit, from production through to consumption. The chapters explore all the most recent developments in areas such as breeding, novel processing technologies, postharvest physiology and storage, packaging, nutritional quality and safety aspects. An outstanding team of authors from across the globe have contributed to make this the definitive pineapple handbook. Handbook of Pineapple Technology: Production, Postharvest Science, Processing and Nutrition is the ultimate guide for scientists in the food industries specializing in fruit processing, packaging and manufacturing. It is also a useful resource for educators and students of food technology and food sciences as well as research centers and regulatory agencies around the world.
Author: João Carlos Setubal
Publisher: Springer Nature
ISBN: 1071638386
Category :
Languages : en
Pages : 622
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Book Description
Author: Shabir Hussain Wani
Publisher: Springer Nature
ISBN: 1071625330
Category : Science
Languages : en
Pages : 366
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Book Description
This volume details different genomic methods and resources to explore cereal genomics. Chapters guide readers through crop genomes, Next Generation Sequencing (NGS) technologies, protocol for CRISPR editing, transgenic wheat, NGS approach, virus induced gene silencing (VIGS), genomic tools, computational prediction of ncRNAs (miRNAs & ceRNAs) in cereal crops, genotyping-by-sequencing (GBS), Bayesian method, single cell sequencing, genome-wide association study (GWAS), QTL interval mapping, whole genome bisulfite sequencing, genome imprinting, and methods for study the receptor-metabolite interaction. Authoritative and cutting-edge, Genomics of Cereal Crops aims to be a useful and practical guide to new researchers and experts looking to expand their knowledge.
Author: Duane Phillip Bartholomew
Publisher: CABI
ISBN: 9780851995038
Category : Gardening
Languages : en
Pages : 301
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Book Description
History, distribution and world production; Morphology, anatomy and taxonomy; Breeding and variety improvement; Biotechnology; Crop environment, plant growth and physiology; Cultural system; Plant nutrition; Inflorescence and fruit development and yield; Pest, diseases and weeds; Postharvest physiology, handling and storage of pineapple; Processing.
