Stochastic Models in Population Genetics PDF Download
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Author: Wen-Hsiung Li
Publisher:
ISBN:
Category : Mathematical models
Languages : en
Pages : 504
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Book Description
Author: Wen-Hsiung Li
Publisher:
ISBN:
Category : Mathematical models
Languages : en
Pages : 504
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Book Description
Author: T. Maruyama
Publisher: Springer Science & Business Media
ISBN: 3642930654
Category : Mathematics
Languages : en
Pages : 254
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Book Description
These are" notes based on courses in Theoretical Population Genetics given at the University of Texas at Houston during the winter quarter, 1974, and at the University of Wisconsin during the fall semester, 1976. These notes explore problems of population genetics and evolution involving stochastic processes. Biological models and various mathematical techniques are discussed. Special emphasis is given to the diffusion method and an attempt is made to emphasize the underlying unity of various problems based on the Kolmogorov backward equation. A particular effort was made to make the subject accessible to biology students who are not familiar with stochastic processes. The references are not exhaustive but were chosen to provide a starting point for the reader interested in pursuing the subject further. Acknowledgement I would like to use this opportunity to express my thanks to Drs. J. F. Crow, M. Nei and W. J. Schull for their hospitality during my stays at their universities. I am indebted to Dr. M. Kimura for his continuous encouragement. My thanks also go to the small but resolute groups of.students, visitors and colleagues whose enthusiasm was a great source of encouragement. I am especially obliged to Dr. Martin Curie-Cohen and Dr. Crow for reading a large part eX the manuscript and making many valuable comments. Special gratitude is expressed to Miss Sumiko Imamiya for her patience and endurance and for her efficient preparation of the manuscript.
Author: Alison Etheridge
Publisher: Springer
ISBN: 3642166326
Category : Mathematics
Languages : en
Pages : 129
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Book Description
This work reflects sixteen hours of lectures delivered by the author at the 2009 St Flour summer school in probability. It provides a rapid introduction to a range of mathematical models that have their origins in theoretical population genetics. The models fall into two classes: forwards in time models for the evolution of frequencies of different genetic types in a population; and backwards in time (coalescent) models that trace out the genealogical relationships between individuals in a sample from the population. Some, like the classical Wright-Fisher model, date right back to the origins of the subject. Others, like the multiple merger coalescents or the spatial Lambda-Fleming-Viot process are much more recent. All share a rich mathematical structure. Biological terms are explained, the models are carefully motivated and tools for their study are presented systematically.
Author: Narendra S. Goel
Publisher: Elsevier
ISBN: 1483278107
Category : Science
Languages : en
Pages : 282
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Book Description
Stochastic Models in Biology describes the usefulness of the theory of stochastic process in studying biological phenomena. The book describes analysis of biological systems and experiments though probabilistic models rather than deterministic methods. The text reviews the mathematical analyses for modeling different biological systems such as the random processes continuous in time and discrete in state space. The book also discusses population growth and extinction through Malthus' law and the work of MacArthur and Wilson. The text then explains the dynamics of a population of interacting species. The book also addresses population genetics under systematic evolutionary pressures known as deterministic equations and genetic changes in a finite population known as stochastic equations. The text then turns to stochastic modeling of biological systems at the molecular level, particularly the kinetics of biochemical reactions. The book also presents various useful equations such as the differential equation for generating functions for birth and death processes. The text can prove valuable for biochemists, cellular biologists, and researchers in the medical and chemical field who are tasked to perform data analysis.
Author: Sergio Albeverio
Publisher: Springer Science & Business Media
ISBN: 9400928939
Category : Mathematics
Languages : en
Pages : 418
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Book Description
Approach your problems from the right end It isn't that they can't see the solution. It is and begin with the answers. Then one day, that they can't see the problem. perhaps you will find the final question. O. K. Chesterton. The Scandal of Father 'The Hermit Qad in Crane Feathers' in R. Brown 'The point of a Pin'. van Gu!ik's The Chinese Maze Murders. Growing specialization and diversification have brought a host of monographs and textbooks on increasingly specialized topics. However, the "tree" of knowledge of mathematics and related fields does not grow only by putting forth new branches. It also happens, quite often in fact, that branches which were thought to be completely disparate are suddenly seen to be related. Further, the kind and level of sophistication of mathematics applied in various sciences has changed drastically in recent years: measure theory is used (non-trivially) in regional and theoretical economics; algebraic geometry interacts with physics; the Minkowsky lemma, coding theory and the structure of water meet one another in packing and covering theory; quantum fields, crystal defects and mathematical programming profit from homotopy theory; Lie algebras are relevant to filtering; and prediction and electrical engineering can use Stein spaces. And in addition to this there are such new emerging subdisciplines as "experimental mathematics", "CFD", "completely integrable systems", "chaos, synergetics and large-scale order", which are almost impossible to fit into the existing classification schemes. They draw upon widely different sections of mathematics.
Author: Alison Etheridge
Publisher: Springer Science & Business Media
ISBN: 3642166318
Category : Mathematics
Languages : en
Pages : 129
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Book Description
This work reflects sixteen hours of lectures delivered by the author at the 2009 St Flour summer school in probability. It provides a rapid introduction to a range of mathematical models that have their origins in theoretical population genetics. The models fall into two classes: forwards in time models for the evolution of frequencies of different genetic types in a population; and backwards in time (coalescent) models that trace out the genealogical relationships between individuals in a sample from the population. Some, like the classical Wright-Fisher model, date right back to the origins of the subject. Others, like the multiple merger coalescents or the spatial Lambda-Fleming-Viot process are much more recent. All share a rich mathematical structure. Biological terms are explained, the models are carefully motivated and tools for their study are presented systematically.
Author: T Maruyama
Publisher:
ISBN: 9783642930669
Category :
Languages : en
Pages : 260
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Book Description
Author: Claudio Barigozzi
Publisher: Springer
ISBN:
Category : Mathematics
Languages : en
Pages : 450
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Book Description
The idea of organizing a symposium on mathematical models in biology came to some colleagues, members of the Accademia dei Lincei, in order to point out the importance of mathematics not only for supplying instruments for the elaboration and the evaluation of experimental data, but also for discussing the possibility of developing mathematical formulations of biological problems. This appeared particularly appropriate for genetics, where mathematical models have been of historical importance. When the organizing work had started, it became clear to us that the classic studies of Vito Volterra (who was also a Member of the Academy and its President from 1923 to 1926) might be conƯ sidered a further reason to have the meeting in Rome at the Accademia dei Lincei; thus the meeting is dedicated to his memory. Biology, in its manifold aspects proved to Se ~ difficult object for an exhaustive approach; thus it became necessary for practical reasons to make a choice of problems. Therefore not all branches of biology have been represented. The proceedings of the symposium, as a whole, assume a knowledge of mathematics on the part of the reader; however the problem of teaching mathematics to biologists was the subject of a round table discussion, not recorded in these proceedings. On this were brought up some basic points to be recommended to teachers on an international basis, and a statement was prepared for circulation. The Organizing Committee TABLE OF CONTENTS TOPIC I MODELS OF NATUPAL SELECTION ... ." ...
Author:
Publisher:
ISBN: 9780387083490
Category : Biomathematics
Languages : en
Pages : 245
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Book Description
Author: Charles J Mode
Publisher: World Scientific
ISBN: 9814397075
Category : Mathematics
Languages : en
Pages : 696
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Book Description
The scope of this book is the field of evolutionary genetics. The book contains new methods for simulating evolution at the genomic level. It sets out applications using up to date Monte Carlo simulation methods applied in classical population genetics, and sets out new fields of quantifying mutation and selection at the Mendelian level. A serious limitation of Wright-Fisher process, the assumption that population size is constant, motivated the introduction of self regulating branching processes in this book. While providing a short review of the principles of probability and its application and using computer intensive methods whilst applying these principles, this book explains how it is possible to derive new formulas expressed in terms of matrix algebra providing new insights into the classical Wright-Fisher processes of evolutionary genetics. Also covered are the development of new methods for studying genetics and evolution, simulating nucleotide substitutions of a DNA molecule and on self regulating branching processes. Components of natural selection are studied in terms of reproductive success of each genotype whilst also studying the differential ability of genotypes to compete for resources and sexual selection. The concept of the gene is also reviewed in this book, and it provides a current definition of a gene based on very recent experiments with micro-array technologies. A development of stochastic models for simulating the evolution of model genomes concludes the studies in this book. Deserving of a place on the book shelves of workers in biomathematics, applied probability, stochastic processes and statistics, as well as in bioinformatics and phylogenetics, it will also be relevant to those interested in computer simulation, and evolutionary biologists interested in quantitative methods. Contents:An Introduction to Mathematical Probability with Applications in Mendelian GeneticsLinkage and Recombination at Multiple LociLinkage and Recombination in Large Random Mating Diploid Populations Random Mating Diploid PopulationsTwo Allele Wright-Fisher Process with Mutation and SelectionMultitype Gamete Sampling Processes, Generation of Random Numbers and Monte Carlo Simulation MethodsNucleotide Substitution Models Formulated as Markov Processes in Continuous TimeMixtures of Markov Processes as Models of Nucleotide Substitutions at Many SitesComputer Implementations and Applications of Nucleotide Substitution Models at Many Sites — Other Non-SNP Types of MutationGenealogies, Coalescence and Self-Regulating Branching ProcessesEmergence, Survival and Extinction of Mutant Types in Populations of Self Replicating Individuals Evolving From Small Founder PopulationsTwo Sex Multitype Self Regulating Branching Processes in Evolutionary GeneticsMultitype Self-Regulatory Branching Process and the Evolutionary Genetics of Age Structured Two Sex PopulationsAn Overview of the History of the Concept of a Gene and Selected Topics in Molecular GeneticsDetecting Genomic Signals of Selection and the Development of Models for Simulating the Evolution of GenomesSuggestions for Further Research, Reading and Viewing Readership: Professionals, researchers in mathematical and theoretical genetics and biology, graduate students in applied stochastic processes. Keywords:Mutation;Selection;Genes;Genomes;Stochastic Processes;Self Regulating Branching Processes;Models of GenomesKey Features:Provides many examples of applying Monte Carlo simulation methods to models that are not tractable mathematicallyRaises the study of evolution to new levels by using computer intensive methods when compared to classical and widely read population genetics books such as those by Ewens and Hartl and ClarkAll models, rooted within a formal framework of stochastic processes, enable any reader to write code in a programming language of his choice, to duplicate any of the experiments reported in the bookReviews: "Evolutionary biologists today need enough mathematical training to be able to assess the power and limits of evolutionary genetic models and to develop theories and models themselves. This book, based on very extensive—and impressive—research work, serves that purpose." Mathematical Reviews
