New Uses for New Phylogenies PDF Download
Are you looking for read ebook online? Search for your book and save it on your Kindle device, PC, phones or tablets. Download New Uses for New Phylogenies PDF full book. Access full book title New Uses for New Phylogenies by Paul H. Harvey. Download full books in PDF and EPUB format.
Author: Paul H. Harvey
Publisher: Oxford University Press on Demand
ISBN: 9780198549840
Category : Science
Languages : en
Pages : 349
Get Book Here
Book Description
Recent advances in molecular genetics make the sequencing of genes a straightforward exercise. Comparisons of sequenced genes from different individuals of a species, or from different species, allow the construction of family trees or evolutionary trees which reveal genetic relationships. This volume shows for the first time how those trees, or phylogenies, can be used to answer questions about population dynamics, epidemiology, development, biodiversity, conservation, and the evolution of genetic systems. The techniques for deciding what these new trees can tell us come together in a unified framework so that a common set of methods can be applied, whatever area of biology interests the researcher.
Author: Paul H. Harvey
Publisher: Oxford University Press on Demand
ISBN: 9780198549840
Category : Science
Languages : en
Pages : 349
Get Book Here
Book Description
Recent advances in molecular genetics make the sequencing of genes a straightforward exercise. Comparisons of sequenced genes from different individuals of a species, or from different species, allow the construction of family trees or evolutionary trees which reveal genetic relationships. This volume shows for the first time how those trees, or phylogenies, can be used to answer questions about population dynamics, epidemiology, development, biodiversity, conservation, and the evolution of genetic systems. The techniques for deciding what these new trees can tell us come together in a unified framework so that a common set of methods can be applied, whatever area of biology interests the researcher.
Author: Emmanuel Paradis
Publisher: Springer Science & Business Media
ISBN: 0387351000
Category : Science
Languages : en
Pages : 221
Get Book Here
Book Description
This book integrates a wide variety of data analysis methods into a single and flexible interface: the R language. The book starts with a presentation of different R packages and gives a short introduction to R for phylogeneticists unfamiliar with this language. The basic phylogenetic topics are covered. The chapter on tree drawing uses R's powerful graphical environment. A section deals with the analysis of diversification with phylogenies, one of the author's favorite research topics. The last chapter is devoted to the development of phylogenetic methods with R and interfaces with other languages (C and C++). Some exercises conclude these chapters.
Author: Joseph Felsenstein
Publisher: Sinauer Associates Incorporated
ISBN: 9780878931774
Category : Science
Languages : en
Pages : 664
Get Book Here
Book Description
Phylogenies, or evolutionary trees, are the basic structures necessary to think about and analyze differences between species. Statistical, computational, and algorithmic work in this field has been ongoing for four decades now, and there have been great advances in understanding. Yet no book has summarized this work. Inferring Phylogenies does just that in a single, compact volume. Phylogenies are inferred with various kinds of data. This book concentrates on some of the central ones: discretely coded characters, molecular sequences, gene frequencies, and quantitative traits. Also covered are restriction sites, RAPDs, and microsatellites.
Author: O. R. P. Bininda-Emonds
Publisher: Springer Science & Business Media
ISBN: 9781402023293
Category : Computers
Languages : en
Pages : 568
Get Book Here
Book Description
This is the first book on "phylogenetic supertrees", a recent, but controversial development for inferring evolutionary trees. Rather than analyze the combined primary character data directly, supertree construction proceeds by combining the tree topologies derived from those data. This difference in strategy has allowed for the exciting possibility of larger, more complete phylogenies than are otherwise currently possible, with the potential to revolutionize evolutionarily-based research. This book provides a comprehensive look at supertrees, ranging from the methods used to build supertrees to the significance of supertrees to bioinformatic and biological research. Reviews of many the major supertree methods are provided and four new techniques, including a Bayesian implementation of supertrees, are described for the first time. The far-reaching impact of supertrees on biological research is highlighted both in general terms and through specific examples from diverse clades such as flowering plants, even-toed ungulates, and primates. The book also critically examines the many outstanding challenges and problem areas for this relatively new field, showing the way for supertree construction in the age of genomics. Interdisciplinary contributions from the majority of the leading authorities on supertree construction in all areas of the bioinformatic community (biology, computer sciences, and mathematics) will ensure that this book is a valuable reference with wide appeal to anyone interested in phylogenetic inference.
Author: Joel Cracraft
Publisher: Oxford University Press
ISBN: 0195172345
Category : Science
Languages : en
Pages : 593
Get Book Here
Book Description
This edited volume is provides an authoritative synthesis of knowledge about the history of life. All the major groups of organisms are treated, by the leading workers in their fields. With sections on: The Importance of Knowing the Tree of Life; The Origin and Radiation of Life on Earth; The Relationships of Green Plants; The Relationships of Fungi; and The Relationships of Animals. This book should prove indispensable for evolutionary biologists, taxonomists, ecologists interested in biodiversity, and as a baseline sourcebook for organismic biologists, botanists, and microbiologists. An essential reference in this fundamental area.
Author: Masatoshi Nei
Publisher: Oxford University Press
ISBN: 0199881227
Category : Science
Languages : en
Pages : 444
Get Book Here
Book Description
During the last ten years, remarkable progress has occurred in the study of molecular evolution. Among the most important factors that are responsible for this progress are the development of new statistical methods and advances in computational technology. In particular, phylogenetic analysis of DNA or protein sequences has become a powerful tool for studying molecular evolution. Along with this developing technology, the application of the new statistical and computational methods has become more complicated and there is no comprehensive volume that treats these methods in depth. Molecular Evolution and Phylogenetics fills this gap and present various statistical methods that are easily accessible to general biologists as well as biochemists, bioinformatists and graduate students. The text covers measurement of sequence divergence, construction of phylogenetic trees, statistical tests for detection of positive Darwinian selection, inference of ancestral amino acid sequences, construction of linearized trees, and analysis of allele frequency data. Emphasis is given to practical methods of data analysis, and methods can be learned by working through numerical examples using the computer program MEGA2 that is provided.
Author:
Publisher: Elsevier
ISBN: 0080493742
Category : Medical
Languages : en
Pages : 417
Get Book Here
Book Description
Parasitology continues to benefit from taking an evolutionary approach to its study. Tree construction, character-mapping, tree-based evolutionary interpretation, and other developments in molecular and morphological phylogenetics have had a profound influence and have shed new light on the very nature of host-parasite relations and their coevolution. Life cycle complexity, parasite ecology and the origins and evolution of parasitism itself are all underpinned by an understanding of phylogeny. The Evolution of Parasitism - A Phylogenetic Perspective aims to bring together a range of articles that exemplifies the phylogenetic approach as applied to various disciplines within parasitology and as applied by parasitologists. Unified by the use of phylogenies, this book tackles a wide variety of parasite-specific biological problems across a diverse range of taxa. - Includes important contributions from leading minds in the field such as Serge Morand, Francisco Ayala and Mark Blaxter, among others - Second in the ISI Parasitology List in 2002 with an Impact Factor of 4.818 - Series encompasses over 35 years of parasitology coverage
Author: Olaf R.P. Bininda-Emonds
Publisher: Springer Science & Business Media
ISBN: 1402023308
Category : Science
Languages : en
Pages : 547
Get Book Here
Book Description
This is the first book on "phylogenetic supertrees", a recent, but controversial development for inferring evolutionary trees. Rather than analyze the combined primary character data directly, supertree construction proceeds by combining the tree topologies derived from those data. This difference in strategy has allowed for the exciting possibility of larger, more complete phylogenies than are otherwise currently possible, with the potential to revolutionize evolutionarily-based research. This book provides a comprehensive look at supertrees, ranging from the methods used to build supertrees to the significance of supertrees to bioinformatic and biological research. Reviews of many the major supertree methods are provided and four new techniques, including a Bayesian implementation of supertrees, are described for the first time. The far-reaching impact of supertrees on biological research is highlighted both in general terms and through specific examples from diverse clades such as flowering plants, even-toed ungulates, and primates. The book also critically examines the many outstanding challenges and problem areas for this relatively new field, showing the way for supertree construction in the age of genomics. Interdisciplinary contributions from the majority of the leading authorities on supertree construction in all areas of the bioinformatic community (biology, computer sciences, and mathematics) will ensure that this book is a valuable reference with wide appeal to anyone interested in phylogenetic inference.
Author: Nathan G. Swenson
Publisher: Springer Science & Business Media
ISBN: 1461495423
Category : Computers
Languages : en
Pages : 217
Get Book Here
Book Description
Functional and Phylogenetic Ecology in R is designed to teach readers to use R for phylogenetic and functional trait analyses. Over the past decade, a dizzying array of tools and methods were generated to incorporate phylogenetic and functional information into traditional ecological analyses. Increasingly these tools are implemented in R, thus greatly expanding their impact. Researchers getting started in R can use this volume as a step-by-step entryway into phylogenetic and functional analyses for ecology in R. More advanced users will be able to use this volume as a quick reference to understand particular analyses. The volume begins with an introduction to the R environment and handling relevant data in R. Chapters then cover phylogenetic and functional metrics of biodiversity; null modeling and randomizations for phylogenetic and functional trait analyses; integrating phylogenetic and functional trait information; and interfacing the R environment with a popular C-based program. This book presents a unique approach through its focus on ecological analyses and not macroevolutionary analyses. The author provides his own code, so that the reader is guided through the computational steps to calculate the desired metrics. This guided approach simplifies the work of determining which package to use for any given analysis. Example datasets are shared to help readers practice, and readers can then quickly turn to their own datasets.
Author: Roderick D.M. Page
Publisher: John Wiley & Sons
ISBN: 1444313363
Category : Science
Languages : en
Pages : 352
Get Book Here
Book Description
The study of evolution at the molecular level has given the subject of evolutionary biology a new significance. Phylogenetic 'trees' of gene sequences are a powerful tool for recovering evolutionary relationships among species, and can be used to answer a broad range of evolutionary and ecological questions. They are also beginning to permeate the medical sciences. In this book, the authors approach the study of molecular evolution with the phylogenetic tree as a central metaphor. This will equip students and professionals with the ability to see both the evolutionary relevance of molecular data, and the significance evolutionary theory has for molecular studies. The book is accessible yet sufficiently detailed and explicit so that the student can learn the mechanics of the procedures discussed. The book is intended for senior undergraduate and graduate students taking courses in molecular evolution/phylogenetic reconstruction. It will also be a useful supplement for students taking wider courses in evolution, as well as a valuable resource for professionals. First student textbook of phylogenetic reconstruction which uses the tree as a central metaphor of evolution. Chapter summaries and annotated suggestions for further reading. Worked examples facilitate understanding of some of the more complex issues. Emphasis on clarity and accessibility.
