Molecular Dynamics Simulation of DNA Oligonucleotides

Molecular Dynamics Simulation of DNA Oligonucleotides PDF Author: Sergei Y. Ponomarev
Publisher:
ISBN: 9781109951202
Category : DNA.
Languages : en
Pages : 159

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Book Description
My participation in the following collaborative projects allows me to discuss: (1) A new method of probability analysis for the comparison of MD trajectories (Chapter 5); (2) The sequential mechanism of A->B transitions (Chapter 6).

Phytotechnie plantes vivrieres

Phytotechnie plantes vivrieres PDF Author:
Publisher:
ISBN:
Category :
Languages : en
Pages : 55

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Structural Bioinformatics of Cyclic AMP-DNA Binding Sites and Molecular Dynamics Simulations of DNA Oligonucleotides

Structural Bioinformatics of Cyclic AMP-DNA Binding Sites and Molecular Dynamics Simulations of DNA Oligonucleotides PDF Author: Kelly Marie Thayer
Publisher:
ISBN:
Category : Binding sites (Biochemistry)
Languages : en
Pages : 758

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Molecular Modeling of Nucleic Acids

Molecular Modeling of Nucleic Acids PDF Author: Neocles B. Leontis
Publisher:
ISBN:
Category : Science
Languages : en
Pages : 458

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Book Description
Covering numerous topics in modeling nucleic acids, this volume looks at the role of various spectroscopic methods, simulations of molecular dynamics using particle mesh methods, and dynamic and genetic algorithms for predicting RNA secondary structure. It also covers the thermodynamics of nucleic acid folding and three-dimensional structure prediction based on sequence information.

Computational studies of RNA and DNA

Computational studies of RNA and DNA PDF Author: Jirí Šponer
Publisher: Springer Science & Business Media
ISBN: 1402048513
Category : Science
Languages : en
Pages : 638

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Book Description
This book integrates modern computational studies of nucleic acids, ranging from advanced electronic structure quantum chemical calculations through explicit solvent molecular dynamics (MD) simulations up to mesoscopic modelling, with the main focus given to the MD field. It gives an equal emphasis to the leading methods and applications while successes as well as pitfalls of the computational techniques are discussed.

Molecular Dynamics Investigations of the Local Structural Characteristics of DNA Oligonucleotides

Molecular Dynamics Investigations of the Local Structural Characteristics of DNA Oligonucleotides PDF Author: Shirley Louise-May
Publisher:
ISBN:
Category : DNA.
Languages : en
Pages : 700

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Structural Studies of Two DNA Oligonucleotides

Structural Studies of Two DNA Oligonucleotides PDF Author: Forrest Justyne Holmes Blocker
Publisher:
ISBN:
Category :
Languages : en
Pages : 342

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Studies on DNA Recognition by Structure-selective Nucleases Using Molecular Dynamics Simulations and Molecular Docking

Studies on DNA Recognition by Structure-selective Nucleases Using Molecular Dynamics Simulations and Molecular Docking PDF Author: Mahadevan Seetharaman
Publisher:
ISBN:
Category : Nucleic acids
Languages : en
Pages : 312

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Book Description


Innovations in Biomolecular Modeling and Simulations

Innovations in Biomolecular Modeling and Simulations PDF Author: Tamar Schlick
Publisher: Royal Society of Chemistry
ISBN: 1849734623
Category : Science
Languages : en
Pages : 355

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Book Description
This two volume set describes innovations in biomolecular modeling and simulation, in both the algorithmic and application fronts.

Nucleic Acid Structure and Recognition

Nucleic Acid Structure and Recognition PDF Author: Stephen Neidle
Publisher: Oxford University Press, USA
ISBN: 9780198506355
Category : Medical
Languages : en
Pages : 212

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Book Description
This book provides a detailed view of the molecular structures of DNA and RNA and how they are recognised by small molecules and proteins. Extensive source material is provided, including information on relevant web sites and computer programmes. The major methods of structural investigation for nucleic acids: X-ray crystallography, NMR, and molecular modelling are reviewed and their scope and limitations (in the context of nucleic acids) discussed. Also covered are the conformational features of nucleic acid building blocks, including a description of how base-pair morphologies are analysed; the structures of DNA double helices and helical oligonucleotides, emphasising current ideas on sequence-dependent structure; and DNA-DNA interactions, including triplexes and quadruplexes. The principles of RNA folding, ribosome, and ribozyme structure are also surveyed. Both covalent and non-covalent nucleic acid interactions with small molecules are described, with the emphasis on recognition principles and sequence specific gene recognition. The principles of protein - nucleic acid are covered, focussing on regulatory proteins. Nucleic Acid Structure and Recognition will therefore equip readers with a good understanding of all the important aspects of this major field. The Nucleic Acid Database (NDB) crystallographic and NMR structures for the nucleic acid structures described in the book are freely available through the Nucleic Acid Structure and Recognition website.