Microbial Roles in Caves

Microbial Roles in Caves PDF Author: Valme Jurado
Publisher: Frontiers Media SA
ISBN: 2832551882
Category : Science
Languages : en
Pages : 242

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Book Description
Caves are dark, underground hollow spaces with relatively constant temperature, high humidity, and limited nutrients. Many caves are associated with karst topography, which is formed by the dissolution of soluble bedrock, such as limestone, dolomite and gypsum, in areas where groundwaters are undersaturated with respect to the minerals in the host rock. Karst landforms spread widely, accounting for approximately 20% of the earth’s dry ice-free surface (Ford and Williams, 2007). As a typical feature of subsurface landscape, karst caves develop globally, with over 50,000 distributed in the United States (Barton and Jurado, 2007). China also has a large contiguous karst terrain, and the Yunnan–Guizhou plateau in the southwest developed most karst caves, among which the longest cave exceeds 138 km (Zhang and Zhu, 2012). Many caves are relatively shallow and form near the water table in karst terranes, although some caves develop by deep-seated hypogenic process at substantial depths and by process other than dissolution such as lava flows. Caves are oligotrophic ecosystems with less than 2 mg of total organic carbon per liter, yet host flourishing microbial groups (Figure 1A), with an average number of 106 microbial cells per gram of cave rock (Barton and Jurado, 2007). The study revealed a high diversity within Bacteria domain and Proteobacteria and Actinobacteria were abundant in oligotrophic cave samples of air, rock, sediment and water. Chloroflexi, Planctomycetes, Bacteroidetes, Firmicutes, Acidobacteria, Nitrospirae, Gemmatimonadetes, and Verrucomicrobia also accounted for large proportions of the total microbial community in caves (Wu et al., 2015; Zhu et al., 2019). In some organic cave samples such as biofilms in sulfur cave, bat guanos, spiders’ webs and earthworm castings, Mycobacterium was prevalently detected (Modra et al., 2017; Sarbu et al., 2018; Hubelova et al., 2021; Pavlik et al., 2021). Over 500 genera of fungi, such as Penicillium, Aspergillus and Mortierella have been reported in caves (Vanderwolf et al., 2013), and new fungal species were identified from cave air, rock, sediment and water samples (Zhang et al., 2017, 2021). These microbial communities contain novel diversity, and promote important biogeochemical processes. With no sunlight, microorganisms in cave environment cannot perform photosynthesis, and are intensively involved in the biogeochemical cycles of carbon, nitrogen, sulfur, and metals such as Fe and Mn to offset the lack of exogenous nutrients and energy.

Microbial Roles in Caves

Microbial Roles in Caves PDF Author: Valme Jurado
Publisher: Frontiers Media SA
ISBN: 2832551882
Category : Science
Languages : en
Pages : 242

Get Book Here

Book Description
Caves are dark, underground hollow spaces with relatively constant temperature, high humidity, and limited nutrients. Many caves are associated with karst topography, which is formed by the dissolution of soluble bedrock, such as limestone, dolomite and gypsum, in areas where groundwaters are undersaturated with respect to the minerals in the host rock. Karst landforms spread widely, accounting for approximately 20% of the earth’s dry ice-free surface (Ford and Williams, 2007). As a typical feature of subsurface landscape, karst caves develop globally, with over 50,000 distributed in the United States (Barton and Jurado, 2007). China also has a large contiguous karst terrain, and the Yunnan–Guizhou plateau in the southwest developed most karst caves, among which the longest cave exceeds 138 km (Zhang and Zhu, 2012). Many caves are relatively shallow and form near the water table in karst terranes, although some caves develop by deep-seated hypogenic process at substantial depths and by process other than dissolution such as lava flows. Caves are oligotrophic ecosystems with less than 2 mg of total organic carbon per liter, yet host flourishing microbial groups (Figure 1A), with an average number of 106 microbial cells per gram of cave rock (Barton and Jurado, 2007). The study revealed a high diversity within Bacteria domain and Proteobacteria and Actinobacteria were abundant in oligotrophic cave samples of air, rock, sediment and water. Chloroflexi, Planctomycetes, Bacteroidetes, Firmicutes, Acidobacteria, Nitrospirae, Gemmatimonadetes, and Verrucomicrobia also accounted for large proportions of the total microbial community in caves (Wu et al., 2015; Zhu et al., 2019). In some organic cave samples such as biofilms in sulfur cave, bat guanos, spiders’ webs and earthworm castings, Mycobacterium was prevalently detected (Modra et al., 2017; Sarbu et al., 2018; Hubelova et al., 2021; Pavlik et al., 2021). Over 500 genera of fungi, such as Penicillium, Aspergillus and Mortierella have been reported in caves (Vanderwolf et al., 2013), and new fungal species were identified from cave air, rock, sediment and water samples (Zhang et al., 2017, 2021). These microbial communities contain novel diversity, and promote important biogeochemical processes. With no sunlight, microorganisms in cave environment cannot perform photosynthesis, and are intensively involved in the biogeochemical cycles of carbon, nitrogen, sulfur, and metals such as Fe and Mn to offset the lack of exogenous nutrients and energy.

Cave Ecology

Cave Ecology PDF Author: Oana Teodora Moldovan
Publisher: Springer
ISBN: 3319988522
Category : Science
Languages : en
Pages : 536

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Book Description
Cave organisms are the ‘monsters’ of the underground world and studying them invariably raises interesting questions about the ways evolution has equipped them to survive in permanent darkness and low-energy environments. Undertaking ecological studies in caves and other subterranean habitats is not only challenging because they are difficult to access, but also because the domain is so different from what we know from the surface, with no plants at the base of food chains and with a nearly constant microclimate year-round. The research presented here answers key questions such as how a constant environment can produce the enormous biodiversity seen below ground, what adaptations and peculiarities allow subterranean organisms to thrive, and how they are affected by the constraints of their environment. This book is divided into six main parts, which address: the habitats of cave animals; their complex diversity; the environmental factors that support that diversity; individual case studies of cave ecosystems; and of the conservation challenges they face; all of which culminate in proposals for future research directions. Given its breadth of coverage, it offers an essential reference guide for graduate students and established researchers alike.

Extremophiles

Extremophiles PDF Author: Koki Horikoshi
Publisher: Wiley-Liss
ISBN:
Category : Medical
Languages : en
Pages : 344

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Book Description
This text is devoted to a particular class of microbe & focuses on its ecology, systematics, physiological & molecular biology. Also included is a discussion of potentially exploitable biotechnological & industrial uses for extremophiles.

Geomicrobiology: Molecular and Environmental Perspective

Geomicrobiology: Molecular and Environmental Perspective PDF Author: Alexander Loy
Publisher: Springer Science & Business Media
ISBN: 9048192048
Category : Science
Languages : fr
Pages : 445

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Book Description
The interaction of microorganisms with geological activities results in processes influencing development of the Earth’s geo- and biospheres. In assessing these microbial functions, scientists have explored short- and longterm geological changes attributed to microorganisms and developed new approaches to evaluate the physiology of microbes including microbial interaction with the geological environment. As the field of geomicrobiology developed, it has become highly interdisciplinary and this book provides a review of the recent developments in a cross section of topics including origin of life, microbial-mineral interactions and microbial processes functioning in marine as well as terrestrial environments. A major component of this book addresses molecular techniques to evaluate microbial evolution and assess relationships of microbes in complex, natural c- munities. Recent developments in so-called ‘omics’ technologies, including (meta) genomics and (meta)proteomics, and isotope labeling methods allow new insights into the function of microbial community members and their possible geological impact. While this book summarizes current knowledge in various areas, it also reveals unresolved questions that require future investigations. Information in these chapters enhances our fundamental knowledge of geomicrobiology that contributes to the exploitation of microbial functions in mineral and environmental biotechn- ogy applications. It is our hope that this book will stimulate interest in the general field of geomicrobiology and encourage others to explore microbial processes as applied to the Earth.

Recent Advancements in Microbial Diversity

Recent Advancements in Microbial Diversity PDF Author: Surajit de Mandal
Publisher: Academic Press
ISBN: 0128212667
Category : Science
Languages : en
Pages : 624

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Book Description
Microorganisms are a major part of the Earth's biological diversity. Although a lot of research has been done on microbial diversity, most of it is fragmented. This book creates the need for a unified text to be published, full of information about microbial diversity from highly reputed and impactful sources. Recent Advancements in Microbial Diversity brings a comprehensive understanding of the recent advances in microbial diversity research focused on different bodily systems, such as the gut. Recent Advancements in Microbial Diversity also discusses how the application of advanced sequencing technologies is used to reveal previously unseen microbial diversity and show off its function. - Gives insight into microbial diversity in different bodily systems - Explains novel approaches to studying microbial diversity - Highlights the use of omics to analyze the microbial community and its functional attributes - Discusses the techniques used to examine microbial diversity, including their applications and respective strengths and weaknesses

The Biology of Caves and Other Subterranean Habitats

The Biology of Caves and Other Subterranean Habitats PDF Author: David C. Culver
Publisher: Oxford University Press
ISBN: 0192552767
Category : Science
Languages : en
Pages : 330

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Book Description
The second edition of this widely cited textbook continues to provide a concise but comprehensive introduction to cave and subterranean biology, describing this fascinating habitat and its biodiversity. It covers a range of biological processes including ecosystem function, evolution and adaptation, community ecology, biogeography, and conservation. The authors draw on a global range of examples and case studies from both caves and non-cave subterranean habitats. One of the barriers to the study of subterranean biology has been the extraordinarily large number of specialized terms used by researchers; the authors explain these terms clearly and minimize the number that they use. This new edition retains the same 10 chapter structure of the original, but the content has been thoroughly revised and updated throughout to reflect the huge increase in publications concerning subterranean biology over the last decade.

Microbial Life of Cave Systems

Microbial Life of Cave Systems PDF Author: Annette Summers Engel
Publisher: Walter de Gruyter GmbH & Co KG
ISBN: 3110389525
Category : Nature
Languages : en
Pages : 407

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Book Description
The earth's subsurface contains abundant and active microbial biomass, living in water, occupying pore space, and colonizing mineral and rock surfaces. Caves are one type of subsurface habitat, being natural, solutionally- or collapse-enlarged openings in rock. Within the past 30 years, there has been an increase in the number of microbiology studies from cave environments to understand cave ecology, cave geology, and even the origins of life. By emphasizing the microbial life of caves, and the ecological processes and geological consequences attributed to microbes, this book provides the first authoritative and comprehensive account of the microbial life of caves for students, professionals, and general readers.

Evolution of Early Earth's Atmosphere, Hydrosphere, and Biosphere

Evolution of Early Earth's Atmosphere, Hydrosphere, and Biosphere PDF Author: Stephen E. Kesler
Publisher: Geological Society of America
ISBN: 0813711983
Category : Science
Languages : en
Pages : 350

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Book Description
"The history of Earth's early atmosphere, hydrosphere, and biosphere, from Hadean through Proterozoic time, is one of geology's enduring puzzles. Ore deposits provide important insights into this history because they contain elements and minerals that are highly sensitive to the geochemical environment in which they form. Just what these minerals tell us remains a matter of considerable debate, however. When and how did life develop, an oxygen-rich atmosphere form, and sulfate dominate the ocean? This volume contains reports on these questions from both sides of the aisle for iron and manganese formations, uranium paleoplacers and hydrothermal deposits, and exhalative sulfides and oxides."--Publisher's website.

Biogeochemical Cycles

Biogeochemical Cycles PDF Author: Katerina Dontsova
Publisher: John Wiley & Sons
ISBN: 1119413303
Category : Science
Languages : en
Pages : 336

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Book Description
Elements move through Earth's critical zone along interconnected pathways that are strongly influenced by fluctuations in water and energy. The biogeochemical cycling of elements is inextricably linked to changes in climate and ecological disturbances, both natural and man-made. Biogeochemical Cycles: Ecological Drivers and Environmental Impact examines the influences and effects of biogeochemical elemental cycles in different ecosystems in the critical zone. Volume highlights include: Impact of global change on the biogeochemical functioning of diverse ecosystems Biological drivers of soil, rock, and mineral weathering Natural elemental sources for improving sustainability of ecosystems Links between natural ecosystems and managed agricultural systems Non-carbon elemental cycles affected by climate change Subsystems particularly vulnerable to global change The American Geophysical Union promotes discovery in Earth and space science for the benefit of humanity. Its publications disseminate scientific knowledge and provide resources for researchers, students, and professionals. Find out more about this book from this Q&A with the Author. Book Review: http://www.elementsmagazine.org/archives/e16_6/e16_6_dep_bookreview.pdf

Mammoth Cave

Mammoth Cave PDF Author: Horton H. Hobbs III
Publisher: Springer
ISBN: 3319537180
Category : Science
Languages : en
Pages : 279

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Book Description
This book reveals the science and beauty of Mammoth Cave, the world's longest cave, which has played an important role in the natural sciences. It offers a comprehensive and interdisciplinary treatment of the cave, combining insights from leading experts in fields ranging from archeology and cultural history to life science and geosciences. The first animals specialized for cave life in North America, including beetles, spiders, crayfish, and fish, were discovered in Mammoth Cave in the 1840s. It has also been used and explored by humans, including Native Americans, who mined its sulfate minerals and later African-American slaves, who made a map of the cave. More recent stories include 'wars' between commercial cave owners, epic exploration trips by modern cave explorers, and of course tourism. The first section of the book is an extensive description including maps and photos of the cave, its basic structural pattern, and how it relates to the surface landscape. The second section covers the human history of utilization and exploration of the cave, including mining, tourism, and medical experiments. Cave science is the topic of the third section, including geology, hydrology, mineralogy, climatology, paleontology, ecology, biodiversity, and microbiology. The fourth section looks to the future, with an overview of environmental issues facing Mammoth Cave managers. The book is intended for anyone interested in caves in general and Mammoth Cave in particular, experts in one discipline seeking information about other areas, and researchers and students interested in the many avenues of pursuit possible in Mammoth Cave.