Molecular Biology of the Cell

Molecular Biology of the Cell PDF Author:
Publisher:
ISBN: 9780815332183
Category : Cells
Languages : en
Pages : 0

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Molecular Biology of the Cell

Molecular Biology of the Cell PDF Author:
Publisher:
ISBN: 9780815332183
Category : Cells
Languages : en
Pages : 0

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Book Description


Initiation of the DNA Replication Cycle in Escherichia Coli

Initiation of the DNA Replication Cycle in Escherichia Coli PDF Author: Gretchen Herpel Stein
Publisher:
ISBN:
Category : DNA.
Languages : en
Pages : 240

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Initiation of DNA Replication in Escherichia Coli

Initiation of DNA Replication in Escherichia Coli PDF Author: Michael Dalbey
Publisher:
ISBN:
Category : DNA.
Languages : en
Pages : 378

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Growth Rate Regulation and Control of Initiation of DNA Replication in Escherichia Coli

Growth Rate Regulation and Control of Initiation of DNA Replication in Escherichia Coli PDF Author: Anne Eliane Chiaramello
Publisher:
ISBN:
Category : DNA
Languages : en
Pages : 300

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Book Description
The initiation of DNA synthesis at the chromosomal replication origin, oriC, in Escherichia coli involves an RNA polymerase-mediated step. The level of synthesis of transcripts moving counterclockwise toward oriC is controlled at two promoters, P1 (asnC) and P2 (mioC), and at two transcription terminator regions, T1 and T2. As shown by S1 mapping, termination at the T2 region occurs to the right of oriC at nucleotides 297-299 and 306-310, while major termination events in the T1 region occur in and near the mioC promoter. The majority of transcripts entering oriC originates from the mioC promoter. Transcription from the mioC promoter has been shown to enhance the frequency of initiation of DNA replication of oriC containing plasmids, and to stabilize these plasmids in the host cells. The mioC promoter, which is stringently controlled, is also growth rate regulated. The amount of mioC transcripts relative to the amount of total RNA was inversely correlated with growth rate. This transcript is characterized by a short half-life (1.5 min). The mioC promoter, which contains a DnaA protein binding site, was much less susceptible to repression by DnaA protein when located in the chromosome, than when located in a plasmid. Only a very high concentration of DnaA protein repressed the mioC promoter. The DnaA protein, which is required for initiation of DNA replication from oriC, is growth rate regulated. As shown by RNase protection, this regulation is exerted at the transcriptional level, affecting both promoters, dnaAp1 and dnaAp2. Transcription from these two promoters is also stringently controlled. The amount of DnaA protein in spoT mutants, which are deficient in ppGpp pyrophosphorylase activity, decreases as the severity in the mutation increases. Thus, the intracellular concentration of ppGpp influences the expression of the dnaA gene. In conclusion, the growth rate regulation and stringent control of the dnaA gene suggest that one way in which DNA replication is coordinated with the growth rate is via ppGpp synthesis at the ribosome.

DNA Replication and the Cell Cycle

DNA Replication and the Cell Cycle PDF Author: Ellen Fanning
Publisher: Springer Science & Business Media
ISBN: 3642770401
Category : Science
Languages : en
Pages : 260

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Book Description
Provided here is an easily accessible introduction to the mechanisms of DNA replication, regulation and the biochemistry of cell cycle control. An overview of this rapidly developing field is presented to orient the reader, followed by a series of contributions by leading researchers summarizing recent results on selected topics, such as protein phosporylation, tumor suppressor genes, and signal transduction in prokaryotic and eucaryotic systems. The reader will gain an overview of our current understanding of DNA replication and the cell cycle, and a selection of useful recent references for further reading.

DNA Replication

DNA Replication PDF Author: Hisao Masai
Publisher: Springer
ISBN: 9811069557
Category : Science
Languages : en
Pages : 581

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Book Description
This book reviews the latest trends and future directions of DNA replication research. The contents reflect upon the principles that have been established through the genetic and enzymatic studies of bacterial, viral, and cellular replication during the past decades. The book begins with a historical overview of the studies on eukaryotic DNA replication by Professor Thomas Kelly, a pioneer of the field. The following chapters include genome-wide studies of replication origins and initiation factor binding, as well as the timing of DNA replications, mechanisms of initiation, DNA chain elongation and termination of DNA replication, the structural basis of functions of protein complexes responsible for execution of DNA replication, cell cycle-dependent regulation of DNA replication, the nature of replication stress and cells’ strategy to deal with the stress, and finally how all these phenomena are interconnected to genome instability and development of various diseases. By reviewing the existing concepts ranging from the old principles to the newest ideas, the book gives readers an opportunity to learn how the classical replication principles are now being modified and new concepts are being generated to explain how genome DNA replication is achieved with such high adaptability and plasticity. With the development of new methods including cryoelectron microscopy analyses of huge protein complexes, single molecular analyses of initiation and elongation of DNA replication, and total reconstitution of eukaryotic DNA replication with purified factors, the field is enjoying one of its most exciting moments, and this highly timely book conveys that excitement to all interested readers.

Control of Macromolecular Synthesis

Control of Macromolecular Synthesis PDF Author: Ole Maaløe
Publisher:
ISBN:
Category : Bacteria
Languages : en
Pages : 306

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Molecular Mechanisms Regulating the Timing of Initiation of DNA Replication During the Cell Division Cycle of Escherichia Coli

Molecular Mechanisms Regulating the Timing of Initiation of DNA Replication During the Cell Division Cycle of Escherichia Coli PDF Author: Joseph A. Bogan
Publisher:
ISBN:
Category : Cell division
Languages : en
Pages : 238

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DNA Replication Control in Microbial Cell Factories

DNA Replication Control in Microbial Cell Factories PDF Author: Monika Glinkowska
Publisher: Springer
ISBN: 3319105337
Category : Science
Languages : en
Pages : 56

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Book Description
This work describes the current knowledge of biochemical mechanisms regulating initiation of DNA replication in Escherichia coli, which focuses on the control of activity of the DnaA protein. Examples of direct linkages between DNA replication and other cellular processes are provided. In addition, similarities of the mechanisms of regulation of DNA replication operating in prokaryotic and eukaryotic cells are identified, and implications for understanding more complex processes, like carcinogenesis are suggested. Studies of recent years provided evidence that regulation of DNA replication in bacteria is more complex than previously anticipated. Multiple layers of control seem to ensure coordination of this process with the increase of cellular mass and the division cycle. Metabolic processes and membrane composition may serve as points where integration of genome replication with growth conditions occurs. It is also likely that coupling of DNA synthesis with cellular metabolism may involve interactions of replication proteins with other macromolecular complexes, responsible for various cellular processes. Thus, the exact set of factors participating in triggering the replication initiation may differ depending on growth conditions. Therefore, understanding the regulation of DNA duplication requires placing this process in the context of the current knowledge on bacterial metabolism, as well as cellular and chromosomal structure. Moreover, in both Escherichia coli and eukaryotic cells, replication initiator proteins were shown to play other roles in addition to driving the assembly of replication complexes, which constitutes another, yet not sufficiently understood, layer of coordinating DNA replication with the cell cycle.

DNA Replication: The Regulatory Mechanisms

DNA Replication: The Regulatory Mechanisms PDF Author: Patrick Hughes
Publisher: Springer Science & Business Media
ISBN: 3642769888
Category : Science
Languages : en
Pages : 429

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Book Description
DNA replication is a key event in the cell cycle. Although our knowledge is far from complete and many elusive regulatory mechanisms still remain beyondour grasp, many enzymes and a multiplicity of biochemical mechanisms involved have been discovered. Recent findings in E. coli have confirmed and yet surpassed the original hypothesis of F. Jacob. In yeast and higher eucaryotes, the apparent redundancy in putative origins and initiators has made an estimation of the importance of each identified element difficult to access. In spite of well established methodologies - which are also described in the book - the origin identification in mammalian chromosomes is still a controversial subject. On the other hand, considerable advances have been made in our understanding of virus DNA replication and this continues to deepen and broaden our understanding of the controls of cellular DNA replication.