Historical and Oceanographic Influences on Phylogeography in the California Current Ecosystem and Applications to Management of Marine Species

Historical and Oceanographic Influences on Phylogeography in the California Current Ecosystem and Applications to Management of Marine Species PDF Author: Alison Jane Haupt
Publisher: Stanford University
ISBN:
Category :
Languages : en
Pages : 138

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Book Description
The overarching theme of my thesis is to explore patterns of larval dispersal as they relate to management of fished marine species. I employed a case study of two species: Megastraea undosa and Parastichopus parvimensis to investigate patterns of phylogeography and assess relative scales of dispersal for these two species which are fished in both California, USA and Baja California, MEX. To examine how some generalities for many species can be made for a specific geographic area, I reviewed all existing phylogeographic studies around Cape Mendocino, CA. Dispersal at a snail's pace: Strong genetic structure in the fisheries gastropod Megastaea undosa. Information about larval dispersal is necessary for effective management of fisheries. Population genetics are often employed to assess dispersal, but these data also carry artifacts from the evolutionary history of a species. I assessed historical and modern demography of the wavy top snail, Megastraea undosa, a marine snail that is fished in California, USA and Baja California, Mexico. Genetic structure at the COI mtDNA locus is strikingly high, with large shifts in haplotype frequencies between southern Baja and southern California. Coalescent-based modeling of genetic data suggests that the population has limited dispersal throughout the range and underwent a northward range expansion after the last glacial maximum. I conclude that both historical and contemporary processes affect observed patterns of phylogeography in M. undosa. Consideration of the evolutionary history of target species allows for a more accurate interpretation of genetic data for management. iv Subtle genetic structure in the commercially fished warty sea cucumber, Parastichopus parvimensis. The warty sea cucumber, P. parvimensis, is fished commercially in both California, USA and Baja California, Mexico but little is known about the status of the fisheries or if separate stocks exist. P. parvimensis has a long pelagic larval duration of 50-90 days, which may translate to high connectivity throughout the species range (Monterey, CA, USA to Bahía Asuncion, BCS, Mexico). I examined phylogeographic patterns at the COI mtDNA locus and five microsatellite loci throughout the range of P. parvimensis and was particularly interested in patterns associated with the potential phylogeographic barriers of Point Conception, CA, USA and Punta Eugenia, BCS, MEX. I found no structure associated with Point Conception, but subtle genetic structure at both types of loci for Punta Eugenia, which may be mechanistically explained by oceanographic patterns. These data have important implications for management of the sea cucumber fishery and indicate that populations south of Punta Eugenia likely do not receive biologically meaningful input of larvae from northern populations to supplement the local fishery. Concordant phylogeographic patterns associated with the major headland of Cape Mendocino in northern California. Most coastlines are non-linear and headlands such as Cape Mendocino may interact with oceanographic processes to create barriers to dispersal. Though Cape Mendocino is a prominent headland, it has been largely ignored in the phylogeographic literature, which focuses instead on Point Conception in southern California. I reviewed and synthesized phylogeographic studies that include sampling sites north and south of Cape Mendocino and discuss the v oceanography and topography of the cape as potential mechanistic drivers of larval dispersal patterns. Slightly more than half (24 out of 46) of the surveyed species that showed significant genetic structure around this headland, which suggests that this headland may be an important barrier to dispersal and may limit connectivity between northern and central California. If populations north of Cape Mendocino have higher connectivity with populations in Oregon than with those in central California, marine spatial planning must occur at a multi-state scale to reach marine conservation goals.

Historical and Oceanographic Influences on Phylogeography in the California Current Ecosystem and Applications to Management of Marine Species

Historical and Oceanographic Influences on Phylogeography in the California Current Ecosystem and Applications to Management of Marine Species PDF Author: Alison Jane Haupt
Publisher: Stanford University
ISBN:
Category :
Languages : en
Pages : 138

Get Book Here

Book Description
The overarching theme of my thesis is to explore patterns of larval dispersal as they relate to management of fished marine species. I employed a case study of two species: Megastraea undosa and Parastichopus parvimensis to investigate patterns of phylogeography and assess relative scales of dispersal for these two species which are fished in both California, USA and Baja California, MEX. To examine how some generalities for many species can be made for a specific geographic area, I reviewed all existing phylogeographic studies around Cape Mendocino, CA. Dispersal at a snail's pace: Strong genetic structure in the fisheries gastropod Megastaea undosa. Information about larval dispersal is necessary for effective management of fisheries. Population genetics are often employed to assess dispersal, but these data also carry artifacts from the evolutionary history of a species. I assessed historical and modern demography of the wavy top snail, Megastraea undosa, a marine snail that is fished in California, USA and Baja California, Mexico. Genetic structure at the COI mtDNA locus is strikingly high, with large shifts in haplotype frequencies between southern Baja and southern California. Coalescent-based modeling of genetic data suggests that the population has limited dispersal throughout the range and underwent a northward range expansion after the last glacial maximum. I conclude that both historical and contemporary processes affect observed patterns of phylogeography in M. undosa. Consideration of the evolutionary history of target species allows for a more accurate interpretation of genetic data for management. iv Subtle genetic structure in the commercially fished warty sea cucumber, Parastichopus parvimensis. The warty sea cucumber, P. parvimensis, is fished commercially in both California, USA and Baja California, Mexico but little is known about the status of the fisheries or if separate stocks exist. P. parvimensis has a long pelagic larval duration of 50-90 days, which may translate to high connectivity throughout the species range (Monterey, CA, USA to Bahía Asuncion, BCS, Mexico). I examined phylogeographic patterns at the COI mtDNA locus and five microsatellite loci throughout the range of P. parvimensis and was particularly interested in patterns associated with the potential phylogeographic barriers of Point Conception, CA, USA and Punta Eugenia, BCS, MEX. I found no structure associated with Point Conception, but subtle genetic structure at both types of loci for Punta Eugenia, which may be mechanistically explained by oceanographic patterns. These data have important implications for management of the sea cucumber fishery and indicate that populations south of Punta Eugenia likely do not receive biologically meaningful input of larvae from northern populations to supplement the local fishery. Concordant phylogeographic patterns associated with the major headland of Cape Mendocino in northern California. Most coastlines are non-linear and headlands such as Cape Mendocino may interact with oceanographic processes to create barriers to dispersal. Though Cape Mendocino is a prominent headland, it has been largely ignored in the phylogeographic literature, which focuses instead on Point Conception in southern California. I reviewed and synthesized phylogeographic studies that include sampling sites north and south of Cape Mendocino and discuss the v oceanography and topography of the cape as potential mechanistic drivers of larval dispersal patterns. Slightly more than half (24 out of 46) of the surveyed species that showed significant genetic structure around this headland, which suggests that this headland may be an important barrier to dispersal and may limit connectivity between northern and central California. If populations north of Cape Mendocino have higher connectivity with populations in Oregon than with those in central California, marine spatial planning must occur at a multi-state scale to reach marine conservation goals.

Seaweed Phylogeography

Seaweed Phylogeography PDF Author: Zi-Min Hu
Publisher: Springer
ISBN: 9401775346
Category : Science
Languages : en
Pages : 398

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Book Description
The book provides an overview of research on the remarkable diversity, adaptive genetic differentiation, and evolutionary complexity of intertidal macroalgae species. Through incorporating molecular data, ecological niche and model-based phylogeographic inference, this book presents the latest findings and hypotheses on the spatial distribution and evolution of seaweeds in the context of historical climate change (e.g. the Quaternary ice ages), contemporary global warming, and increased anthropogenic influences. The chapters in this book highlight past and current research on seaweed phylogeography and predict the future trends and directions. This book frames a number of research cases to review how biogeographic processes and interactive eco-genetic dynamics shaped the demographic histories of seaweeds, which furthermore enhances our understanding of speciation and diversification in the sea. Dr. Zi-Min Hu is an associate professor at Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China. Dr. Ceridwen Fraser is a senior lecturer at Fenner School of Environment and Society, Australian National University, Canberra, Australia.

Seafloor heterogeneity: Artificial structures and marine ecosystem dynamics - recent advances

Seafloor heterogeneity: Artificial structures and marine ecosystem dynamics - recent advances PDF Author: Toyonobu Fujii
Publisher: Frontiers Media SA
ISBN: 2832521797
Category : Science
Languages : en
Pages : 275

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Book Description


The Zoological Record

The Zoological Record PDF Author:
Publisher:
ISBN:
Category : Animals
Languages : en
Pages : 1032

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Book Description


Research and Discoveries

Research and Discoveries PDF Author: Michael A. Lang
Publisher:
ISBN:
Category : Marine sciences
Languages : en
Pages : 268

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Book Description


Historical Biogeography of Neotropical Freshwater Fishes

Historical Biogeography of Neotropical Freshwater Fishes PDF Author: James S. Albert
Publisher: Univ of California Press
ISBN: 0520268687
Category : Nature
Languages : en
Pages : 406

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Book Description
“Full of the details we ichthyologists love, this book will clearly be a standard reference on South American fishes for decades to come. The amazingly detailed glossary alone may well be worth the price of the book!” --Peter B. Moyle, author of Inland Fishes of California “A major contribution to our understanding of multiple aspects of the Neotropical freshwater fish fauna. The book will be of interest not only to ichthyologists, but also to a broader audience of researchers working on freshwater organisms and general biogeographic patterns.”--Richard P. Vari, National Museum of Natural History, Smithsonian Institution “An up-to-date summary of our knowledge of a major continental biodiversity area, that should attract a wide variety of readers."--William Fink, University of Michigan “Successfully brings together disparate information and introduces new data and analyses, giving a vast overview of neotropical freshwater fishes.” --Brian Crother, Southeastern Louisiana University

Ecology Abstracts

Ecology Abstracts PDF Author:
Publisher:
ISBN:
Category : Ecology
Languages : en
Pages : 436

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Book Description
Coverage: 1982- current; updated: monthly. This database covers current ecology research across a wide range of disciplines, reflecting recent advances in light of growing evidence regarding global environmental change and destruction. Major ares of subject coverage include: Algae/lichens, Animals, Annelids, Aquatic ecosystems, Arachnids, Arid zones, Birds, Brackish water, Bryophytes/pteridophytes, Coastal ecosystems, Conifers, Conservation, Control, Crustaceans, Ecosyst em studies, Fungi, Grasses, Grasslands, High altitude environments, Human ecology, Insects, Legumes, Mammals, Management, Microorganisms, Molluscs, Nematodes, Paleo-ecology, Plants, Pollution studies, Reptiles, River basins, Soil, TAiga/tundra, Terrestrial ecosystems, Vertebrates, Wetlands, Woodlands.

State of the Arctic Marine Biodiversity Report

State of the Arctic Marine Biodiversity Report PDF Author:
Publisher: Government Printing Office
ISBN: 9780160939952
Category : Biodiversity
Languages : en
Pages : 200

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Book Description
This is the first report of the Circumpolar Biodiversity Monitoring Program (CBMP) to summarize status and trends in biotic elements in the arctic marine environment. The effort has identified knowledge gaps in circumpolar biodiversity monitoring. CBMP is the cornerstone program of Conservation of Arctic Flora and Fauna (CAFF).

The Ecology of Marine Fishes

The Ecology of Marine Fishes PDF Author: Dr. Larry G. Allen
Publisher: Univ of California Press
ISBN: 0520932471
Category : Science
Languages : en
Pages : 1353

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Book Description
Marine fishes have been intensively studied, and some of the fundamental ideas in the science of marine ecology have emerged from the body of knowledge derived from this diverse group of organisms. This unique, authoritative, and accessible reference, compiled by 35 luminary ecologists, evolutionary biologists, and ichthyologists, provides a synthesis and interpretation of the large, often daunting, body of information on the ecology of marine fishes. The focus is on the fauna of the eastern Pacific, especially the fishes of the California coast, a group among the most diverse and best studied of all marine ecosystems. A generously illustrated and comprehensive source of information, this volume will also be an important launching pad for future research and will shed new light on the study of marine fish ecology worldwide. The contributors touch on many fields in biology, including physiology, development, genetics, behavior, ecology, and evolution. The book includes sections on the history of research, both published and unpublished data, sections on collecting techniques, and references to important earlier studies.

YOUMARES 8 – Oceans Across Boundaries: Learning from each other

YOUMARES 8 – Oceans Across Boundaries: Learning from each other PDF Author: Simon Jungblut
Publisher: Springer
ISBN: 3319932845
Category : Science
Languages : en
Pages : 259

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Book Description
This open access book presents the proceedings volume of the YOUMARES 8 conference, which took place in Kiel, Germany, in September 2017, supported by the German Association for Marine Sciences (DGM). The YOUMARES conference series is entirely bottom-up organized by and for YOUng MARine RESearchers. Qualified early career scientists moderated the scientific sessions during the conference and provided literature reviews on aspects of their research field. These reviews and the presenters’ conference abstracts are compiled here. Thus, this book discusses highly topical fields of marine research and aims to act as a source of knowledge and inspiration for further reading and research.