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Languages : en
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Author: Supaphan Thummasuwan
Publisher:
ISBN:
Category : Baldcypress
Languages : en
Pages :
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My research is focused on advancing understanding of the genomes of two important and distantly related conifer species, loblolly pine (Pinus taeda L.) and bald cypress (Taxodium distichum (L.) Rich. var. distichum). Loblolly pine is the most commercially important tree crop in the United States, the major source of pulpwood for paper manufacturing, a source of quality lumber, a prime bioenergy feedstock, and an important part of the ecosystem of the southeastern U.S. Bald cypress is the dominant tree species in the aptly named "cypress swamps" of the South. Its ecological importance to the wetlands of the southern U.S. is immeasurable. Moreover, bald cypress is a popular ornamental due to its attractive appearance and extreme resistance to pests, pathogens, and weather. Maintaining the security and productiveness of these important crop/forest species in the face of new pest, pathogen and environmental threats will require a better understanding of their genes and the structures of their genomes. We have conducted a study of loblolly pine and bald cypress in which Cot analysis and DNA sequencing of Cot-filtered DNA were utilized to study genome structure. Cot analysis revealed that loblolly pine and bald cypress genomes are each composed of three major kinetic components which we have deemed highly repetitive (HR), moderately repetitive (MR), and single/low copy (SL). In loblolly pine, the HR, MR, and SL components account for 57, 24, and 10%, of genomic DNA, respectively. Of note, 2.71 % of random genomic sequences (i.e., 580 Mb, an amount roughly three times that of the Arabidopsis genome) show significant (bit score>̲ 60) homology to mRNA sequences. This result suggests that the loblolly pine genome contains many genes or pseudogenes, and/or gene duplications. In bald cypress, the HR, MR, and SL components account for 52, 38, and 4%, of genomic DNA, respectively. Sample sequencing was performed only on the HR component of bald cypress; sequence analysis shows only 0.81% of HR sequence reads with homology to mRNA sequences. My research provides insight into the evolution of these distant conifers and key sequence data that should greatly facilitate ongoing molecular breeding programs.
Author: Christophe Plomion
Publisher: CRC Press
ISBN: 1578087198
Category : Science
Languages : en
Pages : 486
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With contributions by internationally reputed researchers in the field, this book presents the implications of the genomic revolution for conifers—promoting a better understanding of the evolution of these organisms as well as new knowledge about the molecular basis of quantitative trait variation. Both of these discoveries play important roles in their domestication. Topics include cytogenetics, patterns of nucleotide diversity, genetic mapping, integration of molecular markers in breeding, transcriptomics, advances in proteomics and metabolomics in gymnosperms, and economic importance.
Author: David B. Neale
Publisher: Springer
ISBN: 3319468073
Category : Science
Languages : en
Pages : 590
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Book Description
This book is the first comprehensive volume on conifers detailing their genomes, variations, and evolution. The book begins with general information about conifers such as taxonomy, geography, reproduction, life history, and social and economic importance. Then topics discussed include the full genome sequence, complex traits, phenotypic and genetic variations, landscape genomics, and forest health and conservation. This book also synthesizes the research included to provide a bigger picture and suggest an evolutionary trajectory. As a large plant family, conifers are an important part of economic botany. The group includes the pines, spruces, firs, larches, yews, junipers, cedars, cypresses, and sequoias. Of the phylum Coniferophyta, conifers typically bear cones and evergreen leaves. Recently, there has been much data available in conifer genomics with the publication of several crop and non-crop genome sequences. In addition to their economic importance, conifers are an important habitat for humans and animals, especially in developing parts of the world. The application of genomics for improving the productivity of conifer crops holds great promise to help provide resources for the most needy in the world.
Author: Juliana Stival Sena
Publisher:
ISBN:
Category :
Languages : en
Pages : 153
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Technical advances have accelerated the structural and functional exploration of conifer genomes and opened up new approaches to study their physiology and adaptation to environmental conditions. This thesis focuses on the evolution of conifer genes and explores (i) the genomic factors that have impacted the evolution of gene structure and (ii) the evolution of a large gene family involved in drought tolerance, the dehydrins. The analysis of gene structure was based on white spruce (Picea glauca [Moench] Voss) sequence data from BAC clones, the genome assembly and the gene space obtained from sequence capture. Through comparative analyses, we found that conifers presented more intronic sequence per gene than most flowering plants (angiosperms) and that the average intron length was not directly correlated to genome size. We found that repetitive elements, which are responsible for the very large size of conifer genomes, also affect the evolution of exons and introns. In the second part of the thesis, we undertook the first exhaustive analysis of the dehydrin gene family in conifers. The phylogenetic analyses indicated the occurrence of a series of gene duplications in conifers and a major lineage duplication, which caused the expansion of the dehydrin family in the genus Picea. Conifer dehydrins have an array of modular amino acid structures, and in spruce, these structures are particularly diverse and are associated with different expression patterns in response to dehydration stress. Taken together, our findings suggest that the evolution of gene structure is dynamic in conifers, which contrast with a widely accepted slow rate of chromosome evolution. They further indicate that the expansion and diversification of adaptation-related genes, like the dehydrins in spruce, may confer the phenotypic plasticity to respond to the environmental changes during their long life span.
Author: Aljos Farjon
Publisher: Timber Press
ISBN: 0881928690
Category : Gardening
Languages : en
Pages : 306
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Book Description
A compelling account of the extraordinary relatives of ordinary garden conifers. Leading expert Aljos Farjon provides a compelling narrative that observes conifers from the standpoint of the curious naturalist. It starts with the basic question of what conifers are and continues to explore their evolution, taxonomy, ecology, distribution, human uses, and issues of conservation. As the story unfolds many popular misconceptions are dispelled, such as the false notion that all conifers have cones. The extraordinary diversity of conifers begins to dawn as Farjon describes the diminutive creeping shrub Microcachrys tetragona, whose strange seed cones resemble raspberries, and the prehistoric-looking Araucaria meulleri. The taxonomic diversity of conifers is huge and Farjon goes on to relate how, over the course of 300 million years, these trees and shrubs have adapted to survive geological upheavals, climatic extremes, and formidable competition from flowering plants. All who seek to learn more about the early history of life on our planet will cherish this book.
Author: Christophe Plomion
Publisher: CRC Press
ISBN: 1439876495
Category : Science
Languages : en
Pages : 476
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Book Description
With contributions by internationally reputed researchers in the field, this book presents the implications of the genomic revolution for conifers-promoting a better understanding of the evolution of these organisms as well as new knowledge about the molecular basis of quantitative trait variation. Both of these discoveries play important roles in
Author: Claire G. Williams
Publisher: Springer Verlag
ISBN: 9781402038686
Category : Business & Economics
Languages : en
Pages : 261
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Book Description
The book is written for policy experts, life scientists, government and business leaders, biotechnology writers and social activists. Few decision-makers realize the unprecedented degree to which transgenic technology is now possible for forests on a commercial scale. Only a handful of the 550 living conifer species is used for commodity value and even fewer species are being developed for transgenic plantations. Transgenic field trials started within the last decade but no transgenic pine plantations exist in 2005. But emergence of transgenic forest trees is still so recent that dialogue about the pros and cons is confined to the scientific community. And dialogue must move out into the public domain. The goal of this volume is to provide content for public deliberations about the genetic composition of future forests. Its Section I is composed of provocative and opposing views on the question of transgenic conifer plantations. Sections II and III follow with research advances on relevant conifer genomics and ecology research, respectively. Section IV forecasts rates of technology adoption for different case studies. Finally, Section V compares the status of regulatory oversight of transgenic forest trees between Canada and the United States.
Author: Johann Greilhuber
Publisher: Springer Science & Business Media
ISBN: 3709111609
Category : Science
Languages : en
Pages : 360
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Book Description
This second of two volumes on Plant Genome Diversity provides, in 20 chapters, insights into the structural evolution of plant genomes with all its variations. Starting with an outline of plant phylogeny and its reconstruction, the second part of the volume describes the architecture and dynamics of the plant cell nucleus, the third examines the evolution and diversity of the karyotype in various lineages, including angiosperms, gymnosperms and monilophytes. The fourth part presents the mechanisms of polyploidization and its biological consequences and significance for land plant evolution. The fifth part deals with genome size evolution and its biological significance. Together with Volume I, this comprehensive book on the plant genome is intended for students and professionals in all fields of plant science, offering as it does a convenient entry into a burgeoning literature in a fast-moving field.
Author: Verónica S. Di Stilio
Publisher: Frontiers Media SA
ISBN: 2889451534
Category :
Languages : en
Pages : 186
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Book Description
This collection attempts to integrate work pertaining to a fundamental question in plant evolution: What are the molecular underpinnings for the origin of different plant forms? Among the many facets this question touches are the transition to land, the emergence of vascular plants, the origin of the seed and the origin and diversification of floral form. We aim to bring to the forefront the most salient and original plant systems and approaches within an inclusive phylogenetic context that encompasses representatives of the major lineages of land plants.
