Design and Analysis of Salmonid Tagging Studies in the Columbia Basin. Volume III, Experiment Designs and Statistical Models to Estimate the Effect of Transportation on Survival of Columbia River System Salmonids

Design and Analysis of Salmonid Tagging Studies in the Columbia Basin. Volume III, Experiment Designs and Statistical Models to Estimate the Effect of Transportation on Survival of Columbia River System Salmonids PDF Author:
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ISBN:
Category :
Languages : en
Pages : 25

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Book Description
Experiment designs to estimate the effect of transportation on survival and return rates of Columbia River system salmonids are discussed along with statistical modeling techniques. Besides transportation, river flow and dam spill are necessary components in the design and analysis, otherwise questions as to the effects of reservoir drawdowns and increased dam spill may never be satisfactorily answered. Four criteria for comparing different experiment designs are: (1) feasibility; (2) clarity of results; (3) scope of inference; and (4) time to learn. A controlled experiment with treatments that are a combination of transport status (transported or left in-river), river flow level, and dam spill level should provide the clearest results of transport effect. The potential for bias due to interactions between year effects and the treatments is minimized by running as many treatments as possible within a single outmigration year. Relatedly, the most rapid learning will occur if several different treatments are implemented at randomly chosen time periods within thesame outmigration season. If the range of flow and dam manipulation includes scenarios of interest to managers, the scope of inference should be satisfactory. On the other hand these designs may be the least feasible; trying to manage the river system under a sequence of deliberately chosen flow regimes within a single season, for example, may be quite impractical. At the other end of the spectrum are designs that simply have two treatment combinations, transportation and being left in-river, and the influence of flow and spill are controlled for, if possible, in after-the-fact statistical analysis. Because of possible confounding influences of flow and spill on the transportation effect, these designs could yield the most ambiguous results and require the most years of experimentation to learn. If flows and spill are not manipulated in a planned, well defined, and impartial manner the scope and quality of inference may not be satisfactory. On the other hand, these designs are the simplest to implement. Implementation issues are: (1) The nature of flow and spill level manipulations will need clear definition, either in absolute terms, cfs, or relative terms, such as spilling 10% of the water. (2) Relatedly, system wide implementation of flow and spill levels will provide simpler interpretation of results than will mixing spill rates, for instance, between dams. Transporting fish from just one location will also simplify interpretation. (3) Tagging of experimental fish should be done well upstream of the dams with random assignment to transport or in-river groups done later, near the dams, to minimize biases from delayed tagging mortality. (4) Tagging with PIT tags and CWTs in combination will provide evidence of any potential homing problems. (5) High PIT tag retention rates are important to minimizing potential analysis problems (thus on-going research to improve retention is vital). (6) Approximate sample sizes to achieve a desired level of precision can be calculated fairly easily using formulas provided in the report.

Design and Analysis of Salmonid Tagging Studies in the Columbia Basin. Volume III, Experiment Designs and Statistical Models to Estimate the Effect of Transportation on Survival of Columbia River System Salmonids

Design and Analysis of Salmonid Tagging Studies in the Columbia Basin. Volume III, Experiment Designs and Statistical Models to Estimate the Effect of Transportation on Survival of Columbia River System Salmonids PDF Author:
Publisher:
ISBN:
Category :
Languages : en
Pages : 25

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Book Description
Experiment designs to estimate the effect of transportation on survival and return rates of Columbia River system salmonids are discussed along with statistical modeling techniques. Besides transportation, river flow and dam spill are necessary components in the design and analysis, otherwise questions as to the effects of reservoir drawdowns and increased dam spill may never be satisfactorily answered. Four criteria for comparing different experiment designs are: (1) feasibility; (2) clarity of results; (3) scope of inference; and (4) time to learn. A controlled experiment with treatments that are a combination of transport status (transported or left in-river), river flow level, and dam spill level should provide the clearest results of transport effect. The potential for bias due to interactions between year effects and the treatments is minimized by running as many treatments as possible within a single outmigration year. Relatedly, the most rapid learning will occur if several different treatments are implemented at randomly chosen time periods within thesame outmigration season. If the range of flow and dam manipulation includes scenarios of interest to managers, the scope of inference should be satisfactory. On the other hand these designs may be the least feasible; trying to manage the river system under a sequence of deliberately chosen flow regimes within a single season, for example, may be quite impractical. At the other end of the spectrum are designs that simply have two treatment combinations, transportation and being left in-river, and the influence of flow and spill are controlled for, if possible, in after-the-fact statistical analysis. Because of possible confounding influences of flow and spill on the transportation effect, these designs could yield the most ambiguous results and require the most years of experimentation to learn. If flows and spill are not manipulated in a planned, well defined, and impartial manner the scope and quality of inference may not be satisfactory. On the other hand, these designs are the simplest to implement. Implementation issues are: (1) The nature of flow and spill level manipulations will need clear definition, either in absolute terms, cfs, or relative terms, such as spilling 10% of the water. (2) Relatedly, system wide implementation of flow and spill levels will provide simpler interpretation of results than will mixing spill rates, for instance, between dams. Transporting fish from just one location will also simplify interpretation. (3) Tagging of experimental fish should be done well upstream of the dams with random assignment to transport or in-river groups done later, near the dams, to minimize biases from delayed tagging mortality. (4) Tagging with PIT tags and CWTs in combination will provide evidence of any potential homing problems. (5) High PIT tag retention rates are important to minimizing potential analysis problems (thus on-going research to improve retention is vital). (6) Approximate sample sizes to achieve a desired level of precision can be calculated fairly easily using formulas provided in the report.

The Design and Analysis of Salmonid Tagging Studies in the Columbia Basin

The Design and Analysis of Salmonid Tagging Studies in the Columbia Basin PDF Author: Ken Newman
Publisher:
ISBN:
Category : Endangered species
Languages : en
Pages : 18

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The Design and Analysis of Salmonid Tagging Studies in the Columbia Basin

The Design and Analysis of Salmonid Tagging Studies in the Columbia Basin PDF Author:
Publisher:
ISBN:
Category :
Languages : en
Pages : 28

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Book Description
Experiment designs to estimate the effect of transportation on survival and return rates of Columbia River system salmonids are discussed along with statistical modeling techniques. Besides transportation, river flow and dam spill are necessary components in the design and analysis otherwise questions as to the effects of reservoir drawdowns and increased dam spill may never be satisfactorily answered. Four criteria for comparing different experiment designs are: (1) feasibility, (2) clarity of results, (3) scope of inference, and (4) time to learn. In this report, alternative designs for conducting experimental manipulations of smolt tagging studies to study effects of river operations such as flow levels, spill fractions, and transporting outmigrating salmonids around dams in the Columbia River system are presented. The principles of study design discussed in this report have broad implications for the many studies proposed to investigate both smolt and adult survival relationships. The concepts are illustrated for the case of the design and analysis of smolt transportation experiments. The merits of proposed transportation studies should be measured relative to these principles of proper statistical design and analysis.

The Design and Analysis of Salmonid Tagging Studies in the Columbia Basin. Volume II: Estimating Salmonid Survival with Combined PIT-CWT Tagging

The Design and Analysis of Salmonid Tagging Studies in the Columbia Basin. Volume II: Estimating Salmonid Survival with Combined PIT-CWT Tagging PDF Author:
Publisher:
ISBN:
Category :
Languages : en
Pages :

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Book Description
Passive Integrated Transponder (PIT) tags and Coded Wire Tags (CWTs) in combination can provide information about salmonid survival that single tag releases may not. The release and recapture protocol affects which survival and recapture rates can be estimated and the precision of the estimates. For the particular case of Columbia river salmonids tagged with both PIT tags and CWTs, three different release and recapture protocols were evaluated. This report addresses the need to study the fate of salmon smolt in-river and their subsequent return as adults. Double-tagging procedures are investigated where PIT-tags would be used to provide in-river survival data during smolt outmigrations and coded-wire tags (CWT) used to provide adult return information. This report provides statistical models for the analysis of the joint data as well as recommendations on optimal tagging studies. Study costs and stress on smolt can be reduced by only PIT-tagging a subset of all the fish coded-wire-tagged, while retaining the information content and sampling precision.

Design and Analysis of Salmonid Tagging Studies in the Columbia Basin, Volume IX ; Comparison of Statistical Methods of Estimating Treatment-Control Ratios Using Coded-Wire Tags, Based on Spring Chinook Salmon on the Columbia River, 1986-1988 Technical Report

Design and Analysis of Salmonid Tagging Studies in the Columbia Basin, Volume IX ; Comparison of Statistical Methods of Estimating Treatment-Control Ratios Using Coded-Wire Tags, Based on Spring Chinook Salmon on the Columbia River, 1986-1988 Technical Report PDF Author:
Publisher:
ISBN:
Category :
Languages : en
Pages : 44

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Book Description
The strength of a salmon run is often measured as the adult return rate from some previous brood year (i.e. the percent of a smolt population returning to spawn or captured in fisheries). The U.S. Army Corp of Engineers (ACOE) program of barge transportation of smolts from collector dams is one mitigation measure used to improve smolt survival. Using Coded Wire-tags, the adult return rates of transported and untransported smolt have been tracked. A ratio of the recovered percentages of adult salmon, those transported in the smolt stage over the salmon not transported (controls), is often used to summarize the program effectiveness. There are a number of ways to estimate this transportation/control (T/C) ratio, and this paper explores six alternative statistical models to improve accuracy and precision of the estimate. Assuming the proportion of adult recoveries are binomially distributed, the data were analyzed using linear regression of arc-sine square-root and logit transformations; general linear model regression (GLM) with logit- and log-links; and a maximum-likelihood estimation (MLE) of the T/C ratio. Profile likelihood intervals were calculated to generate 95% confidence interval estimates of the T/C ratio. Depending on the analytical method, T/C ratios varied greatly. Arc-sine square-root and logit transformations gave individual release T/C ratios which ranged from 1.0934 to 4.0076 and -1.2193 to 1.9057, respectively. The negative T/C ratio is due to the back-transformation properties of the logit transformation. The GLM and MLE approaches produced mean T/C ratios (after adjusting for the individual release batch effects) ranging from 1.4964 to 1.4974. The recommended method from this analysis, a binomial maximum likelihood estimate adjusted for over-dispersion, produced a T/C ratio of 1.4965 with a 95% confidence interval of (1.0618, 1.9312).

SPLM/SPLA Documentation

SPLM/SPLA Documentation PDF Author:
Publisher:
ISBN:
Category : Civil war
Languages : en
Pages : 30

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Design and Analysis of Salmonid Tagging Studies in the Columbia Basin, Volume VII ; Monte-Carlo Comparison of Confidence Interval Procedures for Estimating Survival in a Release-Recapture Study, with Applications to Snake River Salmonids, 1996 Technical Report

Design and Analysis of Salmonid Tagging Studies in the Columbia Basin, Volume VII ; Monte-Carlo Comparison of Confidence Interval Procedures for Estimating Survival in a Release-Recapture Study, with Applications to Snake River Salmonids, 1996 Technical Report PDF Author:
Publisher:
ISBN:
Category :
Languages : en
Pages : 42

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Book Description
Project 89-107, Epidemiological Survival Methods, was developed to provide statistical guidance on the design and analysis of PIT-tag survival studies to the Northwest fisheries community.

The Design and Analysis of Salmonid Tagging Studies in the Columbia Basin

The Design and Analysis of Salmonid Tagging Studies in the Columbia Basin PDF Author: Ken Newman
Publisher:
ISBN:
Category : Biometry
Languages : en
Pages : 23

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Book Description
This report "addresses measure 5.0F.5 of the 1994 NPPC Fish and Wildlife Program with emphasis on improved design and analysis capabilities related to the conduct of salmonid tagging studies in the Columbia River Basin. Double-tagging procedures are investigated where PIT-tags would be used to provide in-river survival data during smolt outmigrations and coded-wire tags (CWT) used to provide adult return information. This report provides statistical models for the analysis of joint data as well as reoommendations on optimal tagging studies."

The Design and Analysis of Salmonid Tagging Studies in the Columbia Basin

The Design and Analysis of Salmonid Tagging Studies in the Columbia Basin PDF Author: Alan B. Lowther
Publisher:
ISBN:
Category : Biometry
Languages : en
Pages : 30

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Book Description
"This report describes three alternate methods for constructing confidence intervals for the probability of survival of salmon smolt between hydroelectric facilities. Confidence intervals constructed using a non-parametric bootstrap procedure and intervals constructed using a profile likelihood method are developed and their performance compared to the standard confidence intervals based on normal probability theory."--Preface, p.ii.

Design and Analysis of Salmonid Tagging Studies in the Columbia Basin

Design and Analysis of Salmonid Tagging Studies in the Columbia Basin PDF Author:
Publisher:
ISBN:
Category :
Languages : en
Pages : 24

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Book Description
Wetlands in the Columbia River estuary are actively being restored by reconnecting these habitats to the estuary, making more wetland habitats available to rearing and migrating juvenile salmon. Concurrently, thousands of acoustically tagged juvenile salmonids are released into the Columbia River to estimate their survival as they migrate through the estuary. Here, we develop a release-recapture model that makes use of these tagged fish to measure the success of wetland restoration projects in terms of their contribution to populations of juvenile salmon. Specifically, our model estimates the fraction of the population that enter the wetland, survival within the wetland, and the mean residence time of fish within the wetland. Furthermore, survival in mainstem Columbia River downstream of the wetland can be compared between fish that remained the mainstem and entered the wetland. These conditional survival estimates provide a means of testing whether the wetland improves the subsequent survival of juvenile salmon by fostering growth or improving their condition. Implementing such a study requires little additional cost because it takes advantage of fish already released to estimate survival through the estuary. Thus, such a study extracts the maximum information at minimum cost from research projects that typically cost millions of dollars annually.