Protein Condensation in Crowded Aqueous Solutions

Protein Condensation in Crowded Aqueous Solutions PDF Author: Ying Wang
Publisher:
ISBN:
Category : Condensation
Languages : en
Pages :

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Book Description
The formation of protein condensed phases (e.g., aggregates, gels and crystals) from aqueous solutions is important in materials science, biology, medicine and biotechnology. However this process is not well-understood and physicochemical studies on protein condensation are fundamental for all the above areas. Protein condensation induced in the presence macromolecular additives is known as macromolecular crowding. Although this process is not well-understood, it is believed that the main action of these additives is to enhance protein condensation by depletion interactions related to the size of macromolecules. Polyethylene glycol (PEG), a hydrophilic nonionic polymer, is one of the most widely used macromolecular-crowding agents. Upon the addition of PEG with an average molecular weight of 1450 g/mol (PEG1450) to bovine serum albumin (BSA) aqueous solutions, protein condensation into oil-like spherical droplets is observed by lowering temperature. This phenomenon is related to liquid-liquid phase separation (LLPS). To investigate the crowding effect of PEG on protein condensation, two thermodynamically independent properties of the LLPS phase boundary were experimentally characterized: (1) the effect of PEG1450 concentration on the LLPS temperature, (2) BSA/PEG1450 partitioning in the two liquid coexisting phases. A thermodynamic perturbation theory, which includes one parameter describing depletion interactions, was used to examine our experimental results. It was found that both independent properties of the phase boundary could be quantitatively described by the same value of the depletion-interaction parameter. However, the depletion-interaction parameter determined from our LLPS experiments was found to be significantly different from that theoretically obtained from the molecular size of BSA and PEG1450 by treating PEG as an ideal chain. The non-ideal behavior of the PEG chain was hypothesized as the main reason for the observed discrepancy. Thus, a more realistic model for the PEG chain was introduced. Monte-Carlo simulations were then performed to calculate novel values of the depletion-interaction parameter from the size of BSA and PEG1450. It is then shown that our new model for PEG chains significantly improves the agreement between experimental results and theory. The role of protein oligomerization on protein condensation was also investigated. It is shown that LLPS of protein aqueous solutions can be isothermally induced by protein oligomerization. For BSA and lysozyme as protein models, protein oligomerization in the presence of glutaraldehyde as a chemical cross-linker can evolve either towards the formation of cross-linked protein condensed droplets or macroscopic amorphous aggregation, depending on the LLPS properties of the protein monomer. Finally, laccase condensation from aqueous solutions was investigated. Laccase is an enzyme used in the petroleum, paper and food industry. The thermodynamic behavior of laccase condensation and the morphology of laccase condensed phases was observed to strongly depend on the nature of the additive (PEG or (NH4)2SO4). Interestingly, laccase condensation could be also induced by using liquid-liquid interfaces. At low enzyme concentrations, it is shown that laccase condensation can be driven by BSA-laccase cross-linking and BSA condensation. This has produced catalytically-active aggregates. The reported preliminary results on laccase provide the basis for more systematic experimental and theoretical investigations on this system.

Protein Condensation in Crowded Aqueous Solutions

Protein Condensation in Crowded Aqueous Solutions PDF Author: Ying Wang
Publisher:
ISBN:
Category : Condensation
Languages : en
Pages :

Get Book Here

Book Description
The formation of protein condensed phases (e.g., aggregates, gels and crystals) from aqueous solutions is important in materials science, biology, medicine and biotechnology. However this process is not well-understood and physicochemical studies on protein condensation are fundamental for all the above areas. Protein condensation induced in the presence macromolecular additives is known as macromolecular crowding. Although this process is not well-understood, it is believed that the main action of these additives is to enhance protein condensation by depletion interactions related to the size of macromolecules. Polyethylene glycol (PEG), a hydrophilic nonionic polymer, is one of the most widely used macromolecular-crowding agents. Upon the addition of PEG with an average molecular weight of 1450 g/mol (PEG1450) to bovine serum albumin (BSA) aqueous solutions, protein condensation into oil-like spherical droplets is observed by lowering temperature. This phenomenon is related to liquid-liquid phase separation (LLPS). To investigate the crowding effect of PEG on protein condensation, two thermodynamically independent properties of the LLPS phase boundary were experimentally characterized: (1) the effect of PEG1450 concentration on the LLPS temperature, (2) BSA/PEG1450 partitioning in the two liquid coexisting phases. A thermodynamic perturbation theory, which includes one parameter describing depletion interactions, was used to examine our experimental results. It was found that both independent properties of the phase boundary could be quantitatively described by the same value of the depletion-interaction parameter. However, the depletion-interaction parameter determined from our LLPS experiments was found to be significantly different from that theoretically obtained from the molecular size of BSA and PEG1450 by treating PEG as an ideal chain. The non-ideal behavior of the PEG chain was hypothesized as the main reason for the observed discrepancy. Thus, a more realistic model for the PEG chain was introduced. Monte-Carlo simulations were then performed to calculate novel values of the depletion-interaction parameter from the size of BSA and PEG1450. It is then shown that our new model for PEG chains significantly improves the agreement between experimental results and theory. The role of protein oligomerization on protein condensation was also investigated. It is shown that LLPS of protein aqueous solutions can be isothermally induced by protein oligomerization. For BSA and lysozyme as protein models, protein oligomerization in the presence of glutaraldehyde as a chemical cross-linker can evolve either towards the formation of cross-linked protein condensed droplets or macroscopic amorphous aggregation, depending on the LLPS properties of the protein monomer. Finally, laccase condensation from aqueous solutions was investigated. Laccase is an enzyme used in the petroleum, paper and food industry. The thermodynamic behavior of laccase condensation and the morphology of laccase condensed phases was observed to strongly depend on the nature of the additive (PEG or (NH4)2SO4). Interestingly, laccase condensation could be also induced by using liquid-liquid interfaces. At low enzyme concentrations, it is shown that laccase condensation can be driven by BSA-laccase cross-linking and BSA condensation. This has produced catalytically-active aggregates. The reported preliminary results on laccase provide the basis for more systematic experimental and theoretical investigations on this system.

Protein Condensation

Protein Condensation PDF Author: James D. Gunton
Publisher:
ISBN: 9780511342295
Category : Condensation
Languages : en
Pages : 364

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Book Description
The quest to understand the condensation of proteins from solutions is a rapidly evolving field. The purpose of this book is to bring to an interdisciplinary audience the state-of-the-art in current research. The first part of the book deals with issues related to the production of high quality protein crystals from solution. Since protein function is determined by structure, high quality protein crystals must be grown in order to determine their structure by X-ray crystallography. The book also discusses diseases that occur due to undesired protein condensation, an increasingly important subject. Examples include sickle cell anemia, cataracts and Alzheimer's disease. Current experimental and theoretical work on these diseases is discussed, which seeks understanding at a fundamental, molecular level, to prevent the undesired condensation from occurring. The book, containing color plate sections, is suitable for graduate students and academic researchers in physics, chemistry, structural biology, protein crystallography and medicine.

Molecular Biology of The Cell

Molecular Biology of The Cell PDF Author: Bruce Alberts
Publisher:
ISBN: 9780815332183
Category : Cytology
Languages : en
Pages : 0

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Book Description


The Role of Protein-protein Interactions in the Phase Behavior of Aqueous Protein Solutions

The Role of Protein-protein Interactions in the Phase Behavior of Aqueous Protein Solutions PDF Author: Camille O. Anderson
Publisher:
ISBN:
Category :
Languages : en
Pages : 454

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Book Description


Effects of Solution Conditions on DNA Condensation and Protein-DNA Interactions

Effects of Solution Conditions on DNA Condensation and Protein-DNA Interactions PDF Author: Jay R. Wenner
Publisher:
ISBN:
Category : DNA-protein interactions
Languages : en
Pages : 356

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Book Description


The Immune Synapse

The Immune Synapse PDF Author: Cosima T. Baldari
Publisher: Humana
ISBN: 9781071631379
Category : Science
Languages : en
Pages : 0

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Book Description
This new collection features the most up-to-date essential protocols that are currently being used to study the immune synapse. Beginning with methods for making biophysical measurements, the volume continues by covering the cell biology of synapses, methods for advanced substrate engineering, mechanobiology topics, new technologies to describe and manipulate synaptic components, as well as methods related to sites of action and immunotherapy. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step and readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and fully updated, The Immune Synapse: Methods and Protocols, Second Edition serves as an ideal practical guide for researchers working in this dynamic field. Chapters 5, 11,18, 27, 30, and 32 are available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.

Hydrogen Bond Networks

Hydrogen Bond Networks PDF Author: Marie-Claire Bellisent-Funel
Publisher: Springer
ISBN: 9789401583336
Category : Science
Languages : en
Pages : 558

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Book Description
The almost universal presence of water in our everyday lives and the very `common' nature of its presence and properties possibly deflects attention from the fact that it has a number of very unusual characteristics which, furthermore, are found to be extremely sensitive to physical parameters, chemical environment and other influences. Hydrogen-bonding effects, too, are not restricted to water, so it is necessary to investigate other systems as well, in order to understand the characteristics in a wider context. Hydrogen Bond Networks reflects the diversity and relevance of water in subjects ranging from the fundamentals of condensed matter physics, through aspects of chemical reactivity to structure and function in biological systems.

Handbook of Food Structure Development

Handbook of Food Structure Development PDF Author: Fotis Spyropoulos
Publisher: Royal Society of Chemistry
ISBN: 178801216X
Category : Science
Languages : en
Pages : 516

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Book Description
The most useful properties of food, i.e. the ones that are detected through look, touch and taste, are a manifestation of the food’s structure. Studies about how this structure develops or can be manipulated during food production and processing are a vital part of research in food science. This book provides the status of research on food structure and how it develops through the interplay between processing routes and formulation elements. It covers food structure development across a range of food settings and consider how this alters in order to design food with specific functionalities and performance. Food structure has to be considered across a range of length scales and the book includes a section focusing on analytical and theoretical approaches that can be taken to analyse/characterise food structure from the nano- to the macro-scale. The book concludes by outlining the main challenges arising within the field and the opportunities that these create in terms of establishing or growing future research activities. Edited and written by world class contributors, this book brings the literature up-to-date by detailing how the technology and applications have moved on over the past 10 years. It serves as a reference for researchers in food science and chemistry, food processing and food texture and structure.

A Study of the Water Structure Round Protein Molecules in Aqueous Solution

A Study of the Water Structure Round Protein Molecules in Aqueous Solution PDF Author: G. H. Haggis
Publisher:
ISBN:
Category :
Languages : en
Pages :

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Book Description


Specific Ion Effects

Specific Ion Effects PDF Author: Werner Kunz
Publisher: World Scientific
ISBN: 9814271586
Category : Medical
Languages : en
Pages : 347

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Book Description
Specific ion effects are important in numerous fields of science and technology. This book summarizes the main ideas that came up over the years. It presents the efforts of theoreticians and supports it by the experimental results stemming from various techniques.