Nonparametric Survival Analysis Under Shape Restrictions

Nonparametric Survival Analysis Under Shape Restrictions PDF Author: Shabnam Fani
Publisher:
ISBN:
Category : Failure time data analysis
Languages : en
Pages : 126

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Book Description
The main problem studied in this thesis is to analyse and model time-to- event data, particularly when the survival times of subjects under study are not exactly observed. One of the primary tasks in the analysis of survival data is to study the distribution of the event times of interest. In order to avoid strict assumptions associated with a parametric model, we resort to nonparametric methods for estimating a function. Although other nonparametric approaches, such as Kaplan-Meier, kernel-based, and roughness penalty methods, are popular tools for solving function estimation problems, they suffer from some non-trivial issues like the loss of some important information about the true underlying function, difficulties with bandwidth or tuning parameter selection. In contrast, one can avoid these issues at the cost of enforcing some qualitative shape constraints on the function to be estimated. We confine our survival analysis studies to estimating a hazard function since it may make a lot of practical sense to impose certain shape constraints on it. Specifically, we study the problem of nonparametric estimation of a hazard function subject to convex shape restrictions, which naturally entails monotonicity constraints. In this thesis, three main objectives are addressed. Firstly, the problem of nonparametric maximum-likelihood estimation of a hazard function under convex shape restrictions is investigated. We introduce a new nonparametric approach to estimating a convex hazard function in the case of exact observations, the case of interval-censored observations, and the mixed case of exact and interval-censored observations. A new idea to handle the problem of choosing the minimum of a convex hazard function estimate is proposed. Based on this, a new fast algorithm for nonparametric hazard function estimation under convexity shape constraints is developed. Theoretical justification for the convergence of the new algorithm is provided. Secondly, nonparametric estimation of a hazard function under smoothness and convex shape assumptions is studied. Particularly, our nonparametric maximum-likelihood approach is generalized for smooth estimation of a function by applying a higher-order smoothness assumption of an estimator. We also evaluate the performance of the estimators using simulation studies and real-world data. Numerical studies suggest that the shape-constrained estimators generally outperform their unconstrained competitors. Moreover, the empirical results indicate that the smooth shape-restricted estimator has more capability to model human mortality data compared to the piecewise linear continuous estimator, specifically in the infant mortality phase. Lastly, our nonparametric estimation of a hazard function approach under convex shape restrictions is extended to the Cox proportional hazards model. A new algorithm is also developed to estimate both convex baseline hazard function and the effects of covariates on survival times. Numerical studies reveal that our new approaches generally dominate the traditional partial likelihood method in the case of right-censored data and the fully semiparametric maximum likelihood estimation method in the case of interval-censored data. Overall, our series of studies show that the shape-restricted approach tends to provide more accurate estimation than its unconstrained competitors, and further investigations in this direction can be highly fruitful.

Nonparametric Survival Analysis Under Shape Restrictions

Nonparametric Survival Analysis Under Shape Restrictions PDF Author: Shabnam Fani
Publisher:
ISBN:
Category : Failure time data analysis
Languages : en
Pages : 126

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Book Description
The main problem studied in this thesis is to analyse and model time-to- event data, particularly when the survival times of subjects under study are not exactly observed. One of the primary tasks in the analysis of survival data is to study the distribution of the event times of interest. In order to avoid strict assumptions associated with a parametric model, we resort to nonparametric methods for estimating a function. Although other nonparametric approaches, such as Kaplan-Meier, kernel-based, and roughness penalty methods, are popular tools for solving function estimation problems, they suffer from some non-trivial issues like the loss of some important information about the true underlying function, difficulties with bandwidth or tuning parameter selection. In contrast, one can avoid these issues at the cost of enforcing some qualitative shape constraints on the function to be estimated. We confine our survival analysis studies to estimating a hazard function since it may make a lot of practical sense to impose certain shape constraints on it. Specifically, we study the problem of nonparametric estimation of a hazard function subject to convex shape restrictions, which naturally entails monotonicity constraints. In this thesis, three main objectives are addressed. Firstly, the problem of nonparametric maximum-likelihood estimation of a hazard function under convex shape restrictions is investigated. We introduce a new nonparametric approach to estimating a convex hazard function in the case of exact observations, the case of interval-censored observations, and the mixed case of exact and interval-censored observations. A new idea to handle the problem of choosing the minimum of a convex hazard function estimate is proposed. Based on this, a new fast algorithm for nonparametric hazard function estimation under convexity shape constraints is developed. Theoretical justification for the convergence of the new algorithm is provided. Secondly, nonparametric estimation of a hazard function under smoothness and convex shape assumptions is studied. Particularly, our nonparametric maximum-likelihood approach is generalized for smooth estimation of a function by applying a higher-order smoothness assumption of an estimator. We also evaluate the performance of the estimators using simulation studies and real-world data. Numerical studies suggest that the shape-constrained estimators generally outperform their unconstrained competitors. Moreover, the empirical results indicate that the smooth shape-restricted estimator has more capability to model human mortality data compared to the piecewise linear continuous estimator, specifically in the infant mortality phase. Lastly, our nonparametric estimation of a hazard function approach under convex shape restrictions is extended to the Cox proportional hazards model. A new algorithm is also developed to estimate both convex baseline hazard function and the effects of covariates on survival times. Numerical studies reveal that our new approaches generally dominate the traditional partial likelihood method in the case of right-censored data and the fully semiparametric maximum likelihood estimation method in the case of interval-censored data. Overall, our series of studies show that the shape-restricted approach tends to provide more accurate estimation than its unconstrained competitors, and further investigations in this direction can be highly fruitful.

Survival Analysis

Survival Analysis PDF Author: Rupert G. Miller, Jr.
Publisher: John Wiley & Sons
ISBN: 1118031067
Category : Mathematics
Languages : en
Pages : 254

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Book Description
A concise summary of the statistical methods used in the analysis of survival data with censoring. Emphasizes recently developed nonparametric techniques. Outlines methods in detail and illustrates them with actual data. Discusses the theory behind each method. Includes numerous worked problems and numerical exercises.

Survival Analysis Using S

Survival Analysis Using S PDF Author: Mara Tableman
Publisher: CRC Press
ISBN: 0203501411
Category : Mathematics
Languages : en
Pages : 277

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Book Description
Survival Analysis Using S: Analysis of Time-to-Event Data is designed as a text for a one-semester or one-quarter course in survival analysis for upper-level or graduate students in statistics, biostatistics, and epidemiology. Prerequisites are a standard pre-calculus first course in probability and statistics, and a course in applied linear regression models. No prior knowledge of S or R is assumed. A wide choice of exercises is included, some intended for more advanced students with a first course in mathematical statistics. The authors emphasize parametric log-linear models, while also detailing nonparametric procedures along with model building and data diagnostics. Medical and public health researchers will find the discussion of cut point analysis with bootstrap validation, competing risks and the cumulative incidence estimator, and the analysis of left-truncated and right-censored data invaluable. The bootstrap procedure checks robustness of cut point analysis and determines cut point(s). In a chapter written by Stephen Portnoy, censored regression quantiles - a new nonparametric regression methodology (2003) - is developed to identify important forms of population heterogeneity and to detect departures from traditional Cox models. By generalizing the Kaplan-Meier estimator to regression models for conditional quantiles, this methods provides a valuable complement to traditional Cox proportional hazards approaches.

Nonparametric Estimation Under Shape Constraints

Nonparametric Estimation Under Shape Constraints PDF Author: P. Groeneboom
Publisher:
ISBN: 9781139020893
Category : Estimation theory
Languages : en
Pages :

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Book Description


Nonparametric Estimation under Shape Constraints

Nonparametric Estimation under Shape Constraints PDF Author: Piet Groeneboom
Publisher: Cambridge University Press
ISBN: 1316194124
Category : Mathematics
Languages : en
Pages : 429

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Book Description
This book treats the latest developments in the theory of order-restricted inference, with special attention to nonparametric methods and algorithmic aspects. Among the topics treated are current status and interval censoring models, competing risk models, and deconvolution. Methods of order restricted inference are used in computing maximum likelihood estimators and developing distribution theory for inverse problems of this type. The authors have been active in developing these tools and present the state of the art and the open problems in the field. The earlier chapters provide an introduction to the subject, while the later chapters are written with graduate students and researchers in mathematical statistics in mind. Each chapter ends with a set of exercises of varying difficulty. The theory is illustrated with the analysis of real-life data, which are mostly medical in nature.

Nonparametric and Parametric Survival Analysis of Censored Data with Possible Violation of Method Assumptions

Nonparametric and Parametric Survival Analysis of Censored Data with Possible Violation of Method Assumptions PDF Author: Guolin Zhao
Publisher:
ISBN:
Category : Mathematical statistics
Languages : en
Pages : 57

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Book Description
"Estimating survival functions has interested statisticians for numerous years. A survival function gives information on the probability of a time-to-event of interest. Research in the area of survival analysis has increased greatly over the last several decades because of its large usage in areas related to biostatistics and the pharmaceutical industry. Among the methods which estimate the survival function, several are widely used and available in popular statistical software programs. One purpose of this research is to compare the efficiency between competing estimators of the survival function. Results are given for simulations which use nonparametric and parametric estimation methods on censored data. The simulated data sets have right-, left-, or interval-censored time points. Comparisons are done on various types of data to see which survival function estimation methods are more suitable. We consider scenarios where distributional assumptions or censoring type assumptions are violated. Another goal of this research is to examine the effects of these incorrect assumptions."--Abstract from author supplied metadata.

Survival Analysis

Survival Analysis PDF Author: John P. Klein
Publisher: Springer Science & Business Media
ISBN: 1475727283
Category : Medical
Languages : en
Pages : 508

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Book Description
Making complex methods more accessible to applied researchers without an advanced mathematical background, the authors present the essence of new techniques available, as well as classical techniques, and apply them to data. Practical suggestions for implementing the various methods are set off in a series of practical notes at the end of each section, while technical details of the derivation of the techniques are sketched in the technical notes. This book will thus be useful for investigators who need to analyse censored or truncated life time data, and as a textbook for a graduate course in survival analysis, the only prerequisite being a standard course in statistical methodology.

A General Class of Function-indexed Nonparametric Tests for Survival Analysis

A General Class of Function-indexed Nonparametric Tests for Survival Analysis PDF Author: Chin-Yu Lin
Publisher:
ISBN:
Category :
Languages : en
Pages : 208

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Book Description


Analysis of Survival Data

Analysis of Survival Data PDF Author: D.R. Cox
Publisher: Routledge
ISBN: 1351466607
Category : Mathematics
Languages : en
Pages : 216

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Book Description
This monograph contains many ideas on the analysis of survival data to present a comprehensive account of the field. The value of survival analysis is not confined to medical statistics, where the benefit of the analysis of data on such factors as life expectancy and duration of periods of freedom from symptoms of a disease as related to a treatment applied individual histories and so on, is obvious. The techniques also find important applications in industrial life testing and a range of subjects from physics to econometrics. In the eleven chapters of the book the methods and applications of are discussed and illustrated by examples.

Survival Analysis

Survival Analysis PDF Author: John O'Quigley
Publisher: Springer Nature
ISBN: 3030334392
Category : Mathematics
Languages : en
Pages : 475

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Book Description
This book provides an extensive coverage of the methodology of survival analysis, ranging from introductory level material to deeper more advanced topics. The framework is that of proportional and non-proportional hazards models; a structure that is broad enough to enable the recovery of a large number of established results as well as to open the way to many new developments. The emphasis is on concepts and guiding principles, logical and graphical. Formal proofs of theorems, propositions and lemmas are gathered together at the end of each chapter separate from the main presentation. The intended audience includes academic statisticians, biostatisticians, epidemiologists and also researchers in these fields whose focus may be more on the applications than on the theory. The text could provide the basis for a two semester course on survival analysis and, with this goal in mind, each chapter includes a section with a range of exercises as a teaching aid for instructors.