Lectures on Statistical Physics and Protein Folding

Lectures on Statistical Physics and Protein Folding PDF Author: Kerson Huang
Publisher: World Scientific
ISBN: 9812561439
Category : Science
Languages : en
Pages : 159

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Book Description
This book introduces an approach to protein folding from the point of view of kinetic theory. There is an abundance of data on protein folding, but few proposals are available on the mechanism driving the process. Here, presented for the first time, are suggestion on possible research directions, as developed by the author in collaboration with C. C. Lin. The first half of this invaluable book contains a concise but relatively complete review of relevant topics in statistical mechanics and kinetic theory. It includes standard topics such as thermodynamics, the Maxwell-Boltzmann distribution, and ensemble theory. Special discussions include the dynamics of phase transitions, and Brownian motion as an illustration of stochastic processes. The second half develops topics in molecular biology and protein structure, with a view to discovering mechanisms underlying protein folding. Attention is focused on the energy flow through the protein in its folded state. A mathematical model, based on the Brownian motion of coupled harmonic oscillators, is worked out in the appendix.

Lectures on Statistical Physics and Protein Folding

Lectures on Statistical Physics and Protein Folding PDF Author: Kerson Huang
Publisher: World Scientific
ISBN: 9812561439
Category : Science
Languages : en
Pages : 159

Get Book Here

Book Description
This book introduces an approach to protein folding from the point of view of kinetic theory. There is an abundance of data on protein folding, but few proposals are available on the mechanism driving the process. Here, presented for the first time, are suggestion on possible research directions, as developed by the author in collaboration with C. C. Lin. The first half of this invaluable book contains a concise but relatively complete review of relevant topics in statistical mechanics and kinetic theory. It includes standard topics such as thermodynamics, the Maxwell-Boltzmann distribution, and ensemble theory. Special discussions include the dynamics of phase transitions, and Brownian motion as an illustration of stochastic processes. The second half develops topics in molecular biology and protein structure, with a view to discovering mechanisms underlying protein folding. Attention is focused on the energy flow through the protein in its folded state. A mathematical model, based on the Brownian motion of coupled harmonic oscillators, is worked out in the appendix.

Protein Physics

Protein Physics PDF Author: Alexei V. Finkelstein
Publisher: Elsevier
ISBN: 0081012365
Category : Science
Languages : en
Pages : 530

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Book Description
Protein Physics: A Course of Lectures covers the most general problems of protein structure, folding and function. It describes key experimental facts and introduces concepts and theories, dealing with fibrous, membrane, and water-soluble globular proteins, in both their native and denatured states. The book systematically summarizes and presents the results of several decades of worldwide fundamental research on protein physics, structure, and folding, describing many physical models that help readers make estimates and predictions of physical processes that occur in proteins. New to this revised edition is the inclusion of novel information on amyloid aggregation, natively disordered proteins, protein folding in vivo, protein motors, misfolding, chameleon proteins, advances in protein engineering & design, and advances in the modeling of protein folding. Further, the book provides problems with solutions, many new and updated references, and physical and mathematical appendices. In addition, new figures (including stereo drawings, with a special appendix showing how to use them) are added, making this an ideal resource for graduate and advanced undergraduate students and researchers in academia in the fields of biophysics, physics, biochemistry, biologists, biotechnology, and chemistry. - Fully revised and expanded new edition based on the latest research developments in protein physics - Written by the world's top expert in the field - Deals with fibrous, membrane, and water-soluble globular proteins, in both their native and denatured states - Summarizes, in a systematic form, the results of several decades of worldwide fundamental research on protein physics and their structure and folding - Examines experimental data on protein structure in the post-genome era

Microcanonical Thermodynamics

Microcanonical Thermodynamics PDF Author: Dieter H. E. Gross
Publisher: World Scientific
ISBN: 9810242158
Category : Science
Languages : en
Pages : 287

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Book Description
Boltzmann's formula S = In(W(E) defines the microcanonical ensemble. The usual textbooks on statistical mechanics start with the microensemble but rather quickly switch to the canonical ensemble introduced by Gibbs. This has the main advantage of easier analytical calculations, but there is a price to pay -- for example, phase transitions can only be defined in the thermodynamic limit of infinite system size. The question how phase transitions show up from systems with, say, 100 particles with an increasing number towards the bulk can only be answered when one finds a way to define and classify phase transitions in small systems. This is all possible within Boltzmann's original definition of the microcanonical ensemble. Starting from Boltzmann's formula, the book formulates the microcanonical thermodynamics entirely within the frame of mechanics. This way the thermodynamic limit is avoided and the formalism applies to small as well to other nonextensive systems like gravitational ones. Phasetransitions of first order, continuous transitions, critical lines and multicritical points can be unambiguously defined by the curvature of the entropy S(E, N). Special attention is given to the fragmentation of nuclei and atomic clusters as a peculiar phase transition of small systems controlled, among others, by angular momentum. The dependence of the liquid-gas transition of small atomic clusters under prescribed pressure is treated. Thus the analogue to the bulk transition can be studied. New insights into the many facets of the many-body physics of the critical point are presented. The book also describes the microcanonical statistics of the collapse of a self-gravitating system under large angular momentum.

New Trends in Statistical Physics

New Trends in Statistical Physics PDF Author: Alfredo Mac¡as
Publisher: World Scientific
ISBN: 981430753X
Category : Science
Languages : en
Pages : 373

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Book Description
Prof Leopoldo Garcia-Colin will become 80 years old in 2010, therefore we are interested in the publication of a Festschrift (book) to honor him. Prof Garcia-Colin has worked in many different fields of statistical physics, and has applied it to biological physics, solid state physics, relativity and cosmology. We are planning a 500 pages book with original and peer-reviewed articles from his friends and former students. We may buy about 100 copies of it.

Introduction to Statistical Physics

Introduction to Statistical Physics PDF Author: Kerson Huang
Publisher: CRC Press
ISBN: 1420055763
Category : Mathematics
Languages : en
Pages : 305

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Book Description
Statistical physics is a core component of most undergraduate (and some post-graduate) physics degree courses. It is primarily concerned with the behavior of matter in bulk-from boiling water to the superconductivity of metals. Ultimately, it seeks to uncover the laws governing random processes, such as the snow on your TV screen. This essential new textbook guides the reader quickly and critically through a statistical view of the physical world, including a wide range of physical applications to illustrate the methodology. It moves from basic examples to more advanced topics, such as broken symmetry and the Bose-Einstein equation. To accompany the text, the author, a renowned expert in the field, has written a Solutions Manual/Instructor's Guide, available free of charge to lecturers who adopt this book for their courses. Introduction to Statistical Physics will appeal to students and researchers in physics, applied mathematics and statistics.

Integrable Models

Integrable Models PDF Author: Ashok Das
Publisher: World Scientific
ISBN: 9814507385
Category : Science
Languages : en
Pages : 358

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Book Description


Statistical Dynamics: Matter Out Of Equilibrium

Statistical Dynamics: Matter Out Of Equilibrium PDF Author: Radu Balescu
Publisher: World Scientific
ISBN: 1783262613
Category : Science
Languages : en
Pages : 340

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Book Description
In the first part of this book, classical nonequilibrium statistical mechanics is developed. Starting from the Hamiltonian dynamics of the molecules, it leads through the irreversible kinetic equations to the level of fluid mechanics. For simple systems, all the transport coefficients are determined by the molecular properties.The second part of the book treats complex systems that require a more extensive use of statistical concepts. Such problems, which are at the forefront of research, include: continuous time random walks, non-Markovian diffusion processes, percolation and related critical phenomena, transport on fractal structures, transport and deterministic chaos. These “strange transport processes” differ significantly from the usual (diffusive) transport. Their inclusion in a general treatise on statistical mechanics is a special feature of this invaluable book./a

Statistical Physics of Crystal Growth

Statistical Physics of Crystal Growth PDF Author: Yukio Saito
Publisher: World Scientific
ISBN: 9812386289
Category : Crystal growth
Languages : en
Pages : 191

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Book Description
This book gives a systematic overview on the scientific fundamentals of crystal growth from the classical phenomenological description to the recent theoretical contributions of statistical physics such as studies on surface roughening and on the pattern formation in the diffusion-limited growth. The book emphasizes physical concepts as well as mathematical details, and is intended to serve as lecture notes for postgraduate courses. Contents: Introduction; Ideal Growth Laws; Statistical Mechanics of Surface; Kinetics-Limited Growth; Diffusion-Limited Growth: Pattern Formation; Appendices; References; Index. Readership: Condensed matter physicists.

Introductory Physics for the Life Sciences

Introductory Physics for the Life Sciences PDF Author: Simon Mochrie
Publisher: Springer Nature
ISBN: 3031058089
Category : Science
Languages : en
Pages : 860

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Book Description
This classroom-tested textbook is an innovative, comprehensive, and forward-looking introductory undergraduate physics course. While it clearly explains physical principles and equips the student with a full range of quantitative tools and methods, the material is firmly grounded in biological relevance and is brought to life with plenty of biological examples throughout. It is designed to be a self-contained text for a two-semester sequence of introductory physics for biology and premedical students, covering kinematics and Newton’s laws, energy, probability, diffusion, rates of change, statistical mechanics, fluids, vibrations, waves, electromagnetism, and optics. Each chapter begins with learning goals, and concludes with a summary of core competencies, allowing for seamless incorporation into the classroom. In addition, each chapter is replete with a wide selection of creative and often surprising examples, activities, computational tasks, and exercises, many of which are inspired by current research topics, making cutting-edge biological physics accessible to the student.

Software Tools and Algorithms for Biological Systems

Software Tools and Algorithms for Biological Systems PDF Author: Hamid Arabnia
Publisher: Springer Science & Business Media
ISBN: 1441970460
Category : Science
Languages : en
Pages : 776

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Book Description
“Software Tools and Algorithms for Biological Systems" is composed of a collection of papers received in response to an announcement that was widely distributed to academicians and practitioners in the broad area of computational biology and software tools. Also, selected authors of accepted papers of BIOCOMP’09 proceedings (International Conference on Bioinformatics and Computational Biology: July 13-16, 2009; Las Vegas, Nevada, USA) were invited to submit the extended versions of their papers for evaluation.