Algorithms on Strings, Trees, and Sequences PDF Download
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Author: Dan Gusfield
Publisher: Cambridge University Press
ISBN: 1139811002
Category : Computers
Languages : en
Pages : 556
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Book Description
String algorithms are a traditional area of study in computer science. In recent years their importance has grown dramatically with the huge increase of electronically stored text and of molecular sequence data (DNA or protein sequences) produced by various genome projects. This book is a general text on computer algorithms for string processing. In addition to pure computer science, the book contains extensive discussions on biological problems that are cast as string problems, and on methods developed to solve them. It emphasises the fundamental ideas and techniques central to today's applications. New approaches to this complex material simplify methods that up to now have been for the specialist alone. With over 400 exercises to reinforce the material and develop additional topics, the book is suitable as a text for graduate or advanced undergraduate students in computer science, computational biology, or bio-informatics. Its discussion of current algorithms and techniques also makes it a reference for professionals.
Author: Dan Gusfield
Publisher: Cambridge University Press
ISBN: 1139811002
Category : Computers
Languages : en
Pages : 556
Get Book Here
Book Description
String algorithms are a traditional area of study in computer science. In recent years their importance has grown dramatically with the huge increase of electronically stored text and of molecular sequence data (DNA or protein sequences) produced by various genome projects. This book is a general text on computer algorithms for string processing. In addition to pure computer science, the book contains extensive discussions on biological problems that are cast as string problems, and on methods developed to solve them. It emphasises the fundamental ideas and techniques central to today's applications. New approaches to this complex material simplify methods that up to now have been for the specialist alone. With over 400 exercises to reinforce the material and develop additional topics, the book is suitable as a text for graduate or advanced undergraduate students in computer science, computational biology, or bio-informatics. Its discussion of current algorithms and techniques also makes it a reference for professionals.
Author: Thomas Mailund
Publisher: Apress
ISBN: 9781484259191
Category : Computers
Languages : en
Pages :
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Book Description
Implement practical data structures and algorithms for text search and discover how it is used inside other larger applications. This unique in-depth guide explains string algorithms using the C programming language. String Algorithms in C teaches you the following algorithms and how to use them: classical exact search algorithms; tries and compact tries; suffix trees and arrays; approximative pattern searches; and more. In this book, author Thomas Mailund provides a library with all the algorithms and applicable source code that you can use in your own programs. There are implementations of all the algorithms presented in this book so there are plenty of examples. You’ll understand that string algorithms are used in various applications such as image processing, computer vision, text analytics processing from data science to web applications, information retrieval from databases, network security, and much more. What You Will Learn Use classical exact search algorithms including naive search, borders/border search, Knuth-Morris-Pratt, and Boyer-Moor with or without Horspool Search in trees, use tries and compact tries, and work with the Aho-Carasick algorithm Process suffix trees including the use and development of McCreight’s algorithm Work with suffix arrays including binary searches; sorting naive constructions; suffix tree construction; skew algorithms; and the Borrows-Wheeler transform (BWT) Deal with enhanced suffix arrays including longest common prefix (LCP) Carry out approximative pattern searches among suffix trees and approximative BWT searches Who This Book Is For Those with at least some prior programming experience with C or Assembly and have at least prior experience with programming algorithms.
Author: Xuan Guo
Publisher: Springer Nature
ISBN: 9819970741
Category : Science
Languages : en
Pages : 567
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Book Description
This book constitutes the refereed proceedings of the 19th International Symposium on Bioinformatics Research and Applications, ISBRA 2023, held in Wrocław, Poland, during October 9–12, 2023. The 28 full papers and 16 short papers included in this book were carefully reviewed and selected from 89 submissions. They were organized in topical sections as follows: reconciling inconsistent molecular structures from biochemical databases; radiology report generation via visual recalibration and context gating-aware; sequence-based nanobody-antigen binding prediction; and hist2Vec: kernel-based embeddings for biological sequence classification.
Author: Julio Saez-Rodriguez
Publisher: Springer
ISBN: 3319075810
Category : Technology & Engineering
Languages : en
Pages : 298
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Book Description
Biological and biomedical research are increasingly driven by experimental techniques that challenge our ability to analyse, process and extract meaningful knowledge from the underlying data. The impressive capabilities of next generation sequencing technologies, together with novel and ever evolving distinct types of omics data technologies, have put an increasingly complex set of challenges for the growing fields of Bioinformatics and Computational Biology. The analysis of the datasets produced and their integration call for new algorithms and approaches from fields such as Databases, Statistics, Data Mining, Machine Learning, Optimization, Computer Science and Artificial Intelligence. Clearly, Biology is more and more a science of information requiring tools from the computational sciences. In the last few years, we have seen the surge of a new generation of interdisciplinary scientists that have a strong background in the biological and computational sciences. In this context, the interaction of researchers from different scientific fields is, more than ever, of foremost importance boosting the research efforts in the field and contributing to the education of a new generation of Bioinformatics scientists. PACBB‘14 contributes to this effort promoting this fruitful interaction. PACBB'14 technical program included 34 papers spanning many different sub-fields in Bioinformatics and Computational Biology. Therefore, the conference promotes the interaction of scientists from diverse research groups and with a distinct background such as computer scientists, mathematicians or biologists.
Author: Roderic Guigo
Publisher: Springer
ISBN: 3540457844
Category : Computers
Languages : en
Pages : 564
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Book Description
We are pleased to present the proceedings of the Second Workshop on Al- rithms in Bioinformatics (WABI 2002), which took place on September 17-21, 2002 in Rome, Italy. The WABI workshop was part of a three-conference me- ing, which, in addition to WABI, included the ESA and APPROX 2002. The three conferences are jointly called ALGO 2002, and were hosted by the F- ulty of Engineering, University of Rome “La Sapienza”. Seehttp://www.dis. uniroma1.it/ ̃algo02 for more details. The Workshop on Algorithms in Bioinformatics covers research in all areas of algorithmic work in bioinformatics and computational biology. The emphasis is on discrete algorithms that address important problems in molecular biology, genomics,andgenetics,thatarefoundedonsoundmodels,thatarecomputati- ally e?cient, and that have been implemented and tested in simulations and on real datasets. The goal is to present recent research results, including signi?cant work in progress, and to identify and explore directions of future research. Original research papers (including signi?cant work in progress) or sta- of-the-art surveys were solicited on all aspects of algorithms in bioinformatics, including, but not limited to: exact and approximate algorithms for genomics, genetics, sequence analysis, gene and signal recognition, alignment, molecular evolution, phylogenetics, structure determination or prediction, gene expression and gene networks, proteomics, functional genomics, and drug design.
Author: Veli Mäkinen
Publisher: Cambridge University Press
ISBN: 1009341219
Category : Computers
Languages : en
Pages : 470
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Book Description
Guided by standard bioscience workflows in high-throughput sequencing analysis, this book for graduate students, researchers, and professionals in bioinformatics and computer science offers a unified presentation of genome-scale algorithms. This new edition covers the use of minimizers and other advanced data structures in pangenomics approaches.
Author: Gonzalo Navarro
Publisher: Cambridge University Press
ISBN: 9780521813075
Category : Computers
Languages : en
Pages : 236
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Book Description
Presents recently developed algorithms for searching for simple, multiple and extended strings, regular expressions, exact and approximate matches.
Author: Dimitrios M. Thilikos
Publisher: Springer
ISBN: 3642332935
Category : Computers
Languages : en
Pages : 283
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Book Description
This book constitutes the refereed proceedings of the 7th International Symposium on Parameterized and Exact Computation, IPEC 2012, in Ljubljana, Slovenia, in September 2012. The 21 revised full papers presented together with 2 keynote talks were carefully reviewed and selected from 37 submissions. The topics addressed cover research in all aspects of parameterized/exact algorithms and complexity including but are not limited to new techniques for the design and analysis of parameterized and exact algorithms; fixed-parameter tractability results; parameterized complexity theory; relationship between parameterized complexity and traditional complexity classifications; applications of parameterized and exact computation; and implementation issues of parameterized and exact algorithms.
Author: Rob Botwright
Publisher: Rob Botwright
ISBN: 1839386193
Category : Computers
Languages : en
Pages : 286
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Book Description
Introducing "ALGORITHMS: COMPUTER SCIENCE UNVEILED" - Your Path to Algorithmic Mastery! Are you fascinated by the world of computer science and the magic of algorithms? Do you want to unlock the power of algorithmic thinking and take your skills to expert levels? Look no further! This exclusive book bundle is your comprehensive guide to mastering the art of algorithms and conquering the exciting realm of computer science. 📘 BOOK 1 - COMPUTER SCIENCE: ALGORITHMS UNVEILED 📘 · Dive into the fundamentals of algorithms. · Perfect for beginners and those new to computer science. · Learn the building blocks of algorithmic thinking. · Lay a strong foundation for your journey into the world of algorithms. 📘 BOOK 2 - MASTERING ALGORITHMS: FROM BASICS TO EXPERT LEVEL 📘 · Take your algorithmic skills to new heights. · Explore advanced sorting and searching techniques. · Uncover the power of dynamic programming and greedy algorithms. · Ideal for students and professionals looking to become algorithmic experts. 📘 BOOK 3 - ALGORITHMIC MASTERY: A JOURNEY FROM NOVICE TO GURU 📘 · Embark on a transformative journey from novice to guru. · Master divide and conquer strategies. · Discover advanced data structures and their applications. · Tackle algorithmic challenges that demand mastery. · Suitable for anyone seeking to elevate their problem-solving abilities. 📘 BOOK 4 - ALGORITHMIC WIZARDRY: UNRAVELING COMPLEXITY FOR EXPERTS 📘 · Push the boundaries of your algorithmic expertise. · Explore expert-level techniques and conquer puzzles. · Unleash the full power of algorithmic mastery. · For those who aspire to become true algorithmic wizards. Why Choose "ALGORITHMS: COMPUTER SCIENCE UNVEILED"? 🌟 Comprehensive Learning: Covering the entire spectrum of algorithmic knowledge, this bundle caters to beginners and experts alike. 🌟 Progression: Start with the basics and gradually advance to expert-level techniques, making it accessible for learners at all stages. 🌟 Real-World Application: Gain practical skills and problem-solving abilities that are highly sought after in the world of computer science. 🌟 Expert Authors: Written by experts in the field, each book provides clear explanations and hands-on examples. 🌟 Career Advancement: Enhance your career prospects with a deep understanding of algorithms, an essential skill in today's tech-driven world. Unlock the Secrets of Computer Science Today! Whether you're a student, a professional, or simply curious about computer science, "ALGORITHMS: COMPUTER SCIENCE UNVEILED" is your gateway to a world of knowledge and expertise. Don't miss this opportunity to acquire a valuable skill set that can propel your career to new heights. Get your copy now and embark on a journey to algorithmic mastery!
Author: Christian Charras
Publisher: College PressPub Company
ISBN: 9780954300647
Category : Computers
Languages : en
Pages : 238
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Book Description
String matching is a very important subject in the wider domain of text processing. It consists of finding one, or more generally, all the occurrences of a string (more generally called a pattern) in a text. The Handbook of Exact String Matching Algorithms presents 38 methods for solving this problem. For each, it gives the main features, a description, its C code, an example and references.
