Diversity-oriented Synthesis of Macrocycles Using Oxidative Ring Expansion Reactions

Diversity-oriented Synthesis of Macrocycles Using Oxidative Ring Expansion Reactions PDF Author: Christopher F. Stratton
Publisher:
ISBN:
Category :
Languages : en
Pages : 548

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Book Description
Macrocycles are large ring structures found in a wide variety of bioactive natural products. The macrocyclic constraint is a key structural element that orients functional groups in three-dimensional space for presentation to binding sites on biological targets. This conformational restriction has also been associated with increased binding affinity and oral bioavailability compared to corresponding linear structures. Accordingly, macrocycles are attractive targets in the diversity-oriented synthesis of natural product-based libraries for probe and drug discovery screening. However, macrocycles have been severely underutilized in this regard as efficient access to diverse collections of macrocyclic scaffolds has been hampered by challenges associated with traditional macrocyclization reactions. To address this problem, we have developed a concise, modular approach to the diversity-oriented synthesis of macrolactones and macrolactams using the oxidative cleavage of a bridging bond in polycyclic enol ethers and enamines. These substrates are assembled in only four or five synthetic steps and undergo ring expansion to afford highly functionalized macrocycles bearing handles for further diversification. In contrast to macrocyclization reactions of corresponding linear seco -acids, the ring expansion reactions are efficient and insensitive to ring size and stereochemistry, overcoming key limitations of conventional approaches to systematic macrocycle synthesis. Cheminformatic analyses of our macrocycle scaffolds indicate that these molecules access underrepresented regions of chemical space that overlap with natural products, including known macrolactones and macrolactams, and are complementary to those addressed by existing synthetic drugs and drug-like libraries. Efficient access to diverse collections of macrocycles is hoped to facilitate the continued evaluation of this important class of molecules in addressing challenging biological targets.

Diversity-oriented Synthesis of Macrocycles Using Oxidative Ring Expansion Reactions

Diversity-oriented Synthesis of Macrocycles Using Oxidative Ring Expansion Reactions PDF Author: Christopher F. Stratton
Publisher:
ISBN:
Category :
Languages : en
Pages : 548

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Book Description
Macrocycles are large ring structures found in a wide variety of bioactive natural products. The macrocyclic constraint is a key structural element that orients functional groups in three-dimensional space for presentation to binding sites on biological targets. This conformational restriction has also been associated with increased binding affinity and oral bioavailability compared to corresponding linear structures. Accordingly, macrocycles are attractive targets in the diversity-oriented synthesis of natural product-based libraries for probe and drug discovery screening. However, macrocycles have been severely underutilized in this regard as efficient access to diverse collections of macrocyclic scaffolds has been hampered by challenges associated with traditional macrocyclization reactions. To address this problem, we have developed a concise, modular approach to the diversity-oriented synthesis of macrolactones and macrolactams using the oxidative cleavage of a bridging bond in polycyclic enol ethers and enamines. These substrates are assembled in only four or five synthetic steps and undergo ring expansion to afford highly functionalized macrocycles bearing handles for further diversification. In contrast to macrocyclization reactions of corresponding linear seco -acids, the ring expansion reactions are efficient and insensitive to ring size and stereochemistry, overcoming key limitations of conventional approaches to systematic macrocycle synthesis. Cheminformatic analyses of our macrocycle scaffolds indicate that these molecules access underrepresented regions of chemical space that overlap with natural products, including known macrolactones and macrolactams, and are complementary to those addressed by existing synthetic drugs and drug-like libraries. Efficient access to diverse collections of macrocycles is hoped to facilitate the continued evaluation of this important class of molecules in addressing challenging biological targets.

Diversity Oriented Synthesis

Diversity Oriented Synthesis PDF Author: Andrea Basso
Publisher: Frontiers Media SA
ISBN: 2889457885
Category :
Languages : en
Pages : 150

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Book Description
Has the concept of Diversity Oriented Synthesis remained unchanged over these two decades, or do we observe improvements or deviations from the original guidelines drawn by the pioneers? The aim of this Research Topic is to collect contributions on the state-of-the-art and progress of Diversity Oriented Synthesis, and to foresee its shape in the next decade.

Practical Medicinal Chemistry with Macrocycles

Practical Medicinal Chemistry with Macrocycles PDF Author: Eric Marsault
Publisher: John Wiley & Sons
ISBN: 1119092566
Category : Science
Languages : en
Pages : 617

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Book Description
Including case studies of macrocyclic marketed drugs and macrocycles in drug development, this book helps medicinal chemists deal with the synthetic and conceptual challenges of macrocycles in drug discovery efforts. Provides needed background to build a program in macrocycle drug discovery –design criteria, macrocycle profiles, applications, and limitations Features chapters contributed from leading international figures involved in macrocyclic drug discovery efforts Covers design criteria, typical profile of current macrocycles, applications, and limitations

Diversity-Oriented Synthesis

Diversity-Oriented Synthesis PDF Author: Andrea Trabocchi
Publisher: John Wiley & Sons
ISBN: 1118618149
Category : Science
Languages : en
Pages : 550

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Book Description
Discover an enhanced synthetic approach to developing and screening chemical compound libraries Diversity-oriented synthesis is a new paradigm for developing large collections of structurally diverse small molecules as probes to investigate biological pathways. This book presents the most effective methods in diversity-oriented synthesis for creating small molecule collections. It offers tested and proven strategies for developing diversity-oriented synthetic libraries and screening methods for identifying ligands. Lastly, it explores some promising new applications based on diversity-oriented synthesis that have the potential to dramatically advance studies in drug discovery and chemical biology. Diversity-Oriented Synthesis begins with an introductory chapter that explores the basics, including a discussion of the relationship between diversity-oriented synthesis and classic combinatorial chemistry. Divided into four parts, the book: Offers key chemical methods for the generation of small molecules using diversity-oriented principles, including peptidomimetics and macrocycles Expands on the concept of diversity-oriented synthesis by describing chemical libraries Provides modern approaches to screening diversity-oriented synthetic libraries, including high-throughput and high-content screening, small molecule microarrays, and smart screening assays Presents the applications of diversity-oriented synthetic libraries and small molecules in drug discovery and chemical biology, reporting the results of key studies and forecasting the role of diversity-oriented synthesis in future biomedical research This book has been written and edited by leading international experts in organic synthesis and its applications. Their contributions are based on a thorough review of the current literature as well as their own firsthand experience developing synthetic methods and applications. Clearly written and extensively referenced, Diversity-Oriented Synthesis introduces novices to this highly promising field of research and serves as a springboard for experts to advance their own research studies and develop new applications.

Development of Methods for the Synthesis of Natural Product-like Macrocycles

Development of Methods for the Synthesis of Natural Product-like Macrocycles PDF Author: Mark John Laurence Dow
Publisher:
ISBN:
Category :
Languages : en
Pages : 538

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Book Description
This thesis describes a modular diversity-oriented synthesis approach, which exploited a 'build→couple→couple→pair' reaction sequence, to generate a library of natural product-like macrocycles. The use of a fluorous-tagged building block allowed the expedient purification of the substrates between the 'couple→couple' stages of the sequence. Building blocks were iteratively linked onto the fluorous tagged building block to give linear substrates bearing two terminal alkenes. These substrates were subjected to ring-closing metathesis to yield diverse macrocyclic scaffolds. Subsequent, deprotection and diversification steps yielded natural product-like macrocycles. Using this approach, over 13 macrocyclic scaffolds were prepared which, in turn, after diversification, yielded over 55 diverse macrocycles, each with unique scaffolds. In addition this project also saw the synthesis of the corresponding linear compounds. Chapter 1 discusses the importance of macrocycles in nature, how this class of molecules have been poorly explored and methods that have been used to explore chemical space. Chapter 2 describes the synthesis of the building blocks and the proposed method to prepare the library of diverse macrocycles. Chapter 3 explores the reactivity of the building blocks and developments required to improve the efficiency of the library synthesis. Chapter 4 describes the final library synthesis from building blocks to final compounds. This work aims to prepare compounds with potential bioactivity; however, the biological evaluation of the compounds is beyond the remit of the study.

Cascade Ring Expansion Reactions for Synthesis of Medium-sized Rings and Macrocycles

Cascade Ring Expansion Reactions for Synthesis of Medium-sized Rings and Macrocycles PDF Author: Illya Zalessky
Publisher:
ISBN:
Category :
Languages : en
Pages : 0

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Book Description
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Small Molecule Medicinal Chemistry

Small Molecule Medicinal Chemistry PDF Author: Werngard Czechtizky
Publisher: John Wiley & Sons
ISBN: 1118771699
Category : Science
Languages : en
Pages : 546

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Book Description
Stressing strategic and technological solutions to medicinal chemistry challenges, this book presents methods and practices for optimizing the chemical aspects of drug discovery. Chapters discuss benefits, challenges, case studies, and industry perspectives for improving drug discovery programs with respect to quality and costs. • Focuses on small molecules and their critical role in medicinal chemistry, reviewing chemical and economic advantages, challenges, and trends in the field from industry perspectives • Discusses novel approaches and key topics, like screening collection enhancement, risk sharing, HTS triage, new lead finding approaches, diversity-oriented synthesis, peptidomimetics, natural products, and high throughput medicinal chemistry approaches • Explains how to reduce design-make-test cycle times by integrating medicinal chemistry, physical chemistry, and ADME profiling techniques • Includes descriptive case studies, examples, and applications to illustrate new technologies and provide step-by-step explanations to enable them in a laboratory setting

Natural Product Biosynthesis

Natural Product Biosynthesis PDF Author: Christopher T. Walsh
Publisher: Royal Society of Chemistry
ISBN: 1788010760
Category : Science
Languages : en
Pages : 787

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Book Description
This textbook describes the types of natural products, the biosynthetic pathways that enable the production of these molecules, and an update on the discovery of novel products in the post-genomic era.

Peptide Macrocycles

Peptide Macrocycles PDF Author: Matthew B. Coppock
Publisher: Humana
ISBN: 9781071616888
Category : Technology & Engineering
Languages : en
Pages : 469

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Book Description
This volume explores the latest techniques and strategies used to study the field of peptide macrocycles. The chapters in this book ae organized into four parts: macrocycles synthesis, combinational library synthesis and screening, macrocycle characterization, and unique applications. Part One looks at a variety of peptide cyclization methodologies, and Part Two describes methods for the creation of peptide macrocycles libraries and their subsequent screening against biological targets of interest. Part Three discusses the study and characterization of peptide macrocycle-target interactions, and Part Four introduces unique applications for peptide macrocycles, from higher-order structure formation to post-synthetic functional modifications. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and comprehensive, Peptide Macrocycles: Methods and Protocols is a valuable resource for both novice and expert researchers looking to learn more about this developing field.

Macrocycles

Macrocycles PDF Author: Edwin Weber
Publisher: Springer
ISBN: 9783662149645
Category : Science
Languages : en
Pages : 278

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Book Description