Biometrical Studies and Quantitative Trait Loci Associated with Major Products of the Carotenoid Pathway of Carrot (daucus Carota L.)

Biometrical Studies and Quantitative Trait Loci Associated with Major Products of the Carotenoid Pathway of Carrot (daucus Carota L.) PDF Author: Carlos Antonio Fernandes Santos
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Category :
Languages : en
Pages : 304

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Orange carrots are a top ranked vegetable in terms ofpro-vitamin A content. Carotenoid pathway products were investigated in F2 populations from two different carrot crosses: orange Brasilia x dark orange HCM and orange B493 x white wild QAL. Broad sense heritabilities va1ues for a1l carotenoids were greater than 90% in the B493 x QAL cross and from 35% to 70% among different carotenoid,s in the Brasilia x HCM cross. The estimated number of factors was 4 for a-carotene, 3 for ~-carotene and total carotenes and one for ?- carotene, lycopene and phytoene in the orange x dark orange cross, and 4 for a-carotene, 1-2 for lycopene and tota1 carotenes and 1 for the other carotenes in the orange x white cross. In comparison to the known biochemical pathways the correct order of substrates and products, phytoene-+? -carotene-+ lycopene, was identified in the path analysis of f3-carotene in the cross Brasilia x HCM but not in the correlation analysis. Linkage grouping ana1ysis assigned 287 and 250 scored molecular markers to the nine chromosomes of carrots, at LOD scores ranging from 3.0 to 7.0 and the average marker spacing was 4.78,4.80,5.54 and 5.13 cM in 11 the Brasilia-, HCM-, B493 and QAL-coupling phase maps, respectively. Interval mapping performed with the orange x dark orange cross detected four, eight, three, one, five and three putative QTL associated with accumulation of ?-carotene, a-carotene, 13-carotene, lycopene, phytoene and total carotenoids, respectively, with major QTL explaining from 10.2 to 13.0% of total phenotypic variation. In the B493 x QAL population single marker analysis identified loci explaining 13.8%,6.8%, 19.3%,5.7%, 17.5% and 20.2% of total phenotypic variation for ?-carotene, a-carotene, 13-carotene, lycopene, phytoene and tota1 carotenoids content, respectively. Overall analysis showed clustered loci affecting the phenotypic variation of carotenoidpathway suggesting clusters of related-pathway loci as an evolutionary mechanism and supporting an adaptive evolutionary model suggested by H. A. Orr. Path analysis and QTL studies suggested that phytoene biosynthesis, perhaps associated with a root specific signal, are the two key factors limiting the carotenoid pathway in roots of white carrots.

Biometrical Studies and Quantitative Trait Loci Associated with Major Products of the Carotenoid Pathway of Carrot (daucus Carota L.)

Biometrical Studies and Quantitative Trait Loci Associated with Major Products of the Carotenoid Pathway of Carrot (daucus Carota L.) PDF Author: Carlos Antonio Fernandes Santos
Publisher:
ISBN:
Category :
Languages : en
Pages : 304

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Book Description
Orange carrots are a top ranked vegetable in terms ofpro-vitamin A content. Carotenoid pathway products were investigated in F2 populations from two different carrot crosses: orange Brasilia x dark orange HCM and orange B493 x white wild QAL. Broad sense heritabilities va1ues for a1l carotenoids were greater than 90% in the B493 x QAL cross and from 35% to 70% among different carotenoid,s in the Brasilia x HCM cross. The estimated number of factors was 4 for a-carotene, 3 for ~-carotene and total carotenes and one for ?- carotene, lycopene and phytoene in the orange x dark orange cross, and 4 for a-carotene, 1-2 for lycopene and tota1 carotenes and 1 for the other carotenes in the orange x white cross. In comparison to the known biochemical pathways the correct order of substrates and products, phytoene-+? -carotene-+ lycopene, was identified in the path analysis of f3-carotene in the cross Brasilia x HCM but not in the correlation analysis. Linkage grouping ana1ysis assigned 287 and 250 scored molecular markers to the nine chromosomes of carrots, at LOD scores ranging from 3.0 to 7.0 and the average marker spacing was 4.78,4.80,5.54 and 5.13 cM in 11 the Brasilia-, HCM-, B493 and QAL-coupling phase maps, respectively. Interval mapping performed with the orange x dark orange cross detected four, eight, three, one, five and three putative QTL associated with accumulation of ?-carotene, a-carotene, 13-carotene, lycopene, phytoene and total carotenoids, respectively, with major QTL explaining from 10.2 to 13.0% of total phenotypic variation. In the B493 x QAL population single marker analysis identified loci explaining 13.8%,6.8%, 19.3%,5.7%, 17.5% and 20.2% of total phenotypic variation for ?-carotene, a-carotene, 13-carotene, lycopene, phytoene and tota1 carotenoids content, respectively. Overall analysis showed clustered loci affecting the phenotypic variation of carotenoidpathway suggesting clusters of related-pathway loci as an evolutionary mechanism and supporting an adaptive evolutionary model suggested by H. A. Orr. Path analysis and QTL studies suggested that phytoene biosynthesis, perhaps associated with a root specific signal, are the two key factors limiting the carotenoid pathway in roots of white carrots.

Biometrical studies and quantitative trait loci associated with majour products of the carotenoid pathway of carrot (Daucus carota L.).

Biometrical studies and quantitative trait loci associated with majour products of the carotenoid pathway of carrot (Daucus carota L.). PDF Author: C. A. F. Santos
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ISBN:
Category :
Languages : pt-BR
Pages :

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Genetic Mapping of Carotenoid Pathway Structural Genes and Major Gene QTLS for Caroteniod Accumulation in Wild and Domesticated Carrot (Daucus Carota L.)

Genetic Mapping of Carotenoid Pathway Structural Genes and Major Gene QTLS for Caroteniod Accumulation in Wild and Domesticated Carrot (Daucus Carota L.) PDF Author: Brian James Just
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ISBN:
Category :
Languages : en
Pages : 252

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Molecular Characterization of Sugar Metabolism in Carrot (Daucus Carota L.)

Molecular Characterization of Sugar Metabolism in Carrot (Daucus Carota L.) PDF Author: Yuan-Yeu Yau
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ISBN:
Category : Soviet Union
Languages : en
Pages : 348

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Gene Expression and Genetic Analysis of Carotenoid Pigment Accumulation in Carrot (Daucus Carota L.)

Gene Expression and Genetic Analysis of Carotenoid Pigment Accumulation in Carrot (Daucus Carota L.) PDF Author:
Publisher:
ISBN:
Category :
Languages : en
Pages : 510

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Carrot (Daucus carota) is an important vegetable crop, providing over 30% of the pro-vitamin A carotenoids in the human diet in the United States. As a major source of these nutriceutical compounds, research efforts have been directed to the regulation of this complex metabolic pathway. This project focused on evaluating gene expression, sequence changes and genetic mapping as it relates to the accumulation of the carotenoid pigments alpha-carotene, beta-carotene, xanthophylls, and lutein. Real-time quantitative PCR (RT-qPCR) was used to determine the level of expression of genes in the carotenoid biosynthesis pathway in different carrot culitvars. Two genes, phytoene synthase 1 (PSY1) and phytoene synthase 2 (PSY2) were found to be expressed at significantly higher levels in orange and dark orange carrot cultivars, whereas the pale orange rp "reduced pigment" mutant exhibited reduced phytoene desaturase (PDS) expression. DNA sequence analysis of putative promoter and coding regions of both PSY1 and PSY2 has identified sequence polymorphisms and large deletions were identified in the putative promoter of PSY2 in the dark orange cultivar B2327. Simple sequence repeat markers (SSRs) were used to create a genetic map from an F2 population segregating for the rp mutation. HPLC (high performance liquid chromatography) analyses of the carotenoids of carrot leaf tissue demonstrated xanthophylls and beta-carotene as the carotenoids present in all carrots, but significantly higher levels of alpha-carotene was identified in carrot germplasm with orange and dark orange storage roots. Chlorophyll fluorescence analysis identified genotype specific variation in photosystem II efficiency, significantly impacted by the time of harvest. To identify new candidate genes involved in carotenoid accumulation in carrot storage root, microarray analysis of sibling white and orange inbred lines from a cross of orange X white carrots was completed. Expression of three genes involved in photosynthesis was significantly higher in the orange rooted carrot germplasm. To examine the role that chromoplast biosynthesis may have in the accumulation of carotenoid pigments, the ratio of nuclear to plastid genome was analyzed in carrot germplasm with differing levels of pigmentation.

Dissertation Abstracts International

Dissertation Abstracts International PDF Author:
Publisher:
ISBN:
Category : Dissertations, Academic
Languages : en
Pages : 632

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Identification and Evaluation of a Gene Associated with Carotenoid Accumulation in Carrot Root (Daucus Carota L.)

Identification and Evaluation of a Gene Associated with Carotenoid Accumulation in Carrot Root (Daucus Carota L.) PDF Author:
Publisher:
ISBN:
Category :
Languages : en
Pages : 216

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Carrot is one of most important vegetable crops, providing provitamin A carotenoids crucial for human nutrition and health. Carotenoid biosynthesis has been extensively studied in plants, however the mechanism underlying carotenoid accumulation is still poorly understood in carrots. Thus, gaining insight into the genetics, biochemistry and regulatory mechanisms of carotenoid accumulation would facilitate the nutritional improvement of carrot. Previously, a two-gene model, including the Y and Y2 genes, was proposed by Buishand and Gabelman to explain the variation of carotenoid accumulation in dark orange, pale orange, yellow and white carrot roots. The Y gene controls the reduction of root pigmentation, while Y2 prevents the synthesis of carotenes but not xanthophylls. This study mainly focused on identification and evaluation of the Y gene. QTL analysis was performed in the F4 mapping population 70796 with a total of 150 individuals to identify the Y gene map location. A large effect QTL with LOD score of 21.2 for total carotenoids was detected on chromosome 5. Data from the marker-trait association study using GLM (general linear model) analysis also supported the location of Y. Fine mapping was then used to identify a 90-kb region that includes 8 annotated genes. Combining this data with that from another population narrowed the candidate region to 75 kb. Comparative transcriptome analysis by RNA-seq revealed that among genes in the 75 kb region, only DCAR_032551 was differentially expressed in both populations. This gene contains a 212 nt indel in the coding region that causes a frameshift mutation in high pigmented (yy) roots, making it the most promising candidate gene. A genetic rescue test was performed to test the function of the candidate Y gene, DCAR_032551 using Agrobacterium-mediated gene transformation. Three transgenic plants were regenerated and shown to contain the integrated vector. However, after several attempts there were no transformants survived to further evaluation. Transcriptome data suggested that high carotenoid accumulation involves the overexpression of several light-induced genes operating in photosystem development and function. We hypothesized here that carotenoid accumulation is controlled at the regulatory level, and high carotenoid accumulation in carrot taproot results from the stimulation of carotenoid accumulation without light induction through the same mechanism that stimulates carotenoid accumulation in shoots in de-etiolation.

Studies on the Inheritance of Root Color and Carotenoid Biosynthesis in Carrots, Daucus Carota, L.

Studies on the Inheritance of Root Color and Carotenoid Biosynthesis in Carrots, Daucus Carota, L. PDF Author: Nakdimon Umiel
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ISBN:
Category : Carotenoids
Languages : en
Pages : 254

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Inheritance and Molecular Marker-based Genetic Mapping of Parthenocarpy in Cucumber (Cucumis Sativus L.)

Inheritance and Molecular Marker-based Genetic Mapping of Parthenocarpy in Cucumber (Cucumis Sativus L.) PDF Author: Zhanyong Sun
Publisher:
ISBN:
Category :
Languages : en
Pages : 254

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American Doctoral Dissertations

American Doctoral Dissertations PDF Author:
Publisher:
ISBN:
Category : Dissertation abstracts
Languages : en
Pages : 776

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