Algorithms for Analysis, Inference, and Control of Boolean Networks PDF Download
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Author: Akutsu Tatsuya
Publisher: World Scientific Publishing Company
ISBN: 9789813233423
Category :
Languages : en
Pages : 250
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Book Description
Author: Akutsu Tatsuya
Publisher: World Scientific Publishing Company
ISBN: 9789813233423
Category :
Languages : en
Pages : 250
Get Book Here
Book Description
Author: Katsuhisa Horimoto
Publisher: Springer Science & Business Media
ISBN: 3540851003
Category : Computers
Languages : en
Pages : 256
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Book Description
This book constitutes the refereed proceedings of the Third International Conference on Algebraic Biology, AB 2008, held at the Castle of Hagenberg, Austria in July 2008 as part of the RISC Summer 2008, organized by the Research Institute for Symbolic Computation. The 14 revised full papers presented together with 3 tutorial lectures were carefully reviewed and selected from 27 submissions. The conference is the interdisciplinary forum for the presentation of research on all aspects of applications of symbolic computation (computer algebra, computational logic, and related methods) to various issues in biology and life sciences as well as other problems in biology being approached with symbolic methods.
Author: Ilya Shmulevich
Publisher: SIAM
ISBN: 0898716926
Category : Mathematics
Languages : en
Pages : 276
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Book Description
The first comprehensive treatment of probabilistic Boolean networks, unifying different strands of current research and addressing emerging issues.
Author: Tatsuya Akutsu
Publisher: World Scientific
ISBN: 9813233443
Category : Computers
Languages : en
Pages : 227
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Book Description
The Boolean network (BN) is a mathematical model of genetic networks and other biological networks. Although extensive studies have been done on BNs from a viewpoint of complex systems, not so many studies have been undertaken from a computational viewpoint. This book presents rigorous algorithmic results on important computational problems on BNs, which include inference of a BN, detection of singleton and periodic attractors in a BN, and control of a BN. This book also presents algorithmic results on fundamental computational problems on probabilistic Boolean networks and a Boolean model of metabolic networks. Although most contents of the book are based on the work by the author and collaborators, other important computational results and techniques are also reviewed or explained.
Author: Daizhan Cheng
Publisher: Springer Science & Business Media
ISBN: 0857290975
Category : Science
Languages : en
Pages : 474
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Book Description
Analysis and Control of Boolean Networks presents a systematic new approach to the investigation of Boolean control networks. The fundamental tool in this approach is a novel matrix product called the semi-tensor product (STP). Using the STP, a logical function can be expressed as a conventional discrete-time linear system. In the light of this linear expression, certain major issues concerning Boolean network topology – fixed points, cycles, transient times and basins of attractors – can be easily revealed by a set of formulae. This framework renders the state-space approach to dynamic control systems applicable to Boolean control networks. The bilinear-systemic representation of a Boolean control network makes it possible to investigate basic control problems including controllability, observability, stabilization, disturbance decoupling etc.
Author: Jesper Jansson
Publisher: Springer
ISBN: 3319919385
Category : Computers
Languages : en
Pages : 157
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Book Description
This book constitutes the proceedings of the 5th InternationalConference on Algorithms for Computational Biology, AlCoB 2018, held in Hong Kong, China, in June 2018. The 11 full papers presented together with 1 invited paper were carefully reviewed and selected from 20 submissions. They are organized in the following topical sections: Phylogenetics, Sequence Rearrangement and Analysis, Systems Biology and Other Biological Processes.
Author: Yves Crama
Publisher: Cambridge University Press
ISBN: 1139498630
Category : Mathematics
Languages : en
Pages : 711
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Book Description
Written by prominent experts in the field, this monograph provides the first comprehensive, unified presentation of the structural, algorithmic and applied aspects of the theory of Boolean functions. The book focuses on algebraic representations of Boolean functions, especially disjunctive and conjunctive normal form representations. This framework looks at the fundamental elements of the theory (Boolean equations and satisfiability problems, prime implicants and associated short representations, dualization), an in-depth study of special classes of Boolean functions (quadratic, Horn, shellable, regular, threshold, read-once functions and their characterization by functional equations) and two fruitful generalizations of the concept of Boolean functions (partially defined functions and pseudo-Boolean functions). Several topics are presented here in book form for the first time. Because of the depth and breadth and its emphasis on algorithms and applications, this monograph will have special appeal for researchers and graduate students in discrete mathematics, operations research, computer science, engineering and economics.
Author: Das, Sanjoy
Publisher: IGI Global
ISBN: 1605666866
Category : Computers
Languages : en
Pages : 740
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Book Description
"This book focuses on methods widely used in modeling gene networks including structure discovery, learning, and optimization"--Provided by publisher.
Author: Kuize Zhang
Publisher: Springer
ISBN: 3030259722
Category : Technology & Engineering
Languages : en
Pages : 226
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Book Description
Discrete-Time and Discrete-Space Dynamical Systems provides a systematic characterization of the similarities and differences of several types of discrete-time and discrete-space dynamical systems, including: Boolean control networks; nondeterministic finite-transition systems; finite automata; labelled Petri nets; and cellular automata. The book's perspective is primarily based on topological properties though it also employs semitensor-product and graph-theoretic methods where appropriate. It presents a series of fundamental results: invertibility, observability, detectability, reversiblity, etc., with applications to systems biology. Academic researchers with backgrounds in applied mathematics, engineering or computer science and practising engineers working with discrete-time and discrete-space systems will find this book a helpful source of new understanding for this increasingly important class of systems. The basic results to be found within are of fundamental importance for further study of related problems such as automated synthesis and safety control in cyber-physical systems using formal methods.
Author: Mykel J. Kochenderfer
Publisher: MIT Press
ISBN: 0262370239
Category : Computers
Languages : en
Pages : 701
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Book Description
A broad introduction to algorithms for decision making under uncertainty, introducing the underlying mathematical problem formulations and the algorithms for solving them. Automated decision-making systems or decision-support systems—used in applications that range from aircraft collision avoidance to breast cancer screening—must be designed to account for various sources of uncertainty while carefully balancing multiple objectives. This textbook provides a broad introduction to algorithms for decision making under uncertainty, covering the underlying mathematical problem formulations and the algorithms for solving them. The book first addresses the problem of reasoning about uncertainty and objectives in simple decisions at a single point in time, and then turns to sequential decision problems in stochastic environments where the outcomes of our actions are uncertain. It goes on to address model uncertainty, when we do not start with a known model and must learn how to act through interaction with the environment; state uncertainty, in which we do not know the current state of the environment due to imperfect perceptual information; and decision contexts involving multiple agents. The book focuses primarily on planning and reinforcement learning, although some of the techniques presented draw on elements of supervised learning and optimization. Algorithms are implemented in the Julia programming language. Figures, examples, and exercises convey the intuition behind the various approaches presented.
