Author: Wenpan Dong
Publisher: Frontiers Media SA
ISBN: 2832527248
Category : Science
Languages : en
Pages : 133
Book Description
Rise to the challenges in plastome phylogenomics
Author: Wenpan Dong
Publisher: Frontiers Media SA
ISBN: 2832527248
Category : Science
Languages : en
Pages : 133
Book Description
Publisher: Frontiers Media SA
ISBN: 2832527248
Category : Science
Languages : en
Pages : 133
Book Description
Phylogenomic Discordance in Plant Systematics
Author: Stefan Wanke
Publisher: Frontiers Media SA
ISBN: 2832538991
Category : Science
Languages : en
Pages : 233
Book Description
Phylogenetics often uncovers contradicting hypotheses regarding the relationships within the same group of organisms, a phenomenon known since the beginning of the molecular systematics era. While, historically, single marker-based analyses produced discordance, nowadays entire cellular genomes or portions of the same genomic compartment conflict with others or the rest, respectively. In contrast to the beginning of the molecular systematics era, when adding markers and taxa offered a way out of systematic errors, genome inference-based incongruences cannot be addressed and explained easily. Disagreeing phylogenomic hypotheses might originate from various evolutionary processes, including but not limited to hybridization or incomplete lineage sorting, thereby leading to gene tree-versus species tree-associated discrepancies. Today, this can be expanded to genome discordance, where phylogenomic signals of organellar genomes (plastid, mitochondrial) and the nuclear genome disagree due to intrinsically different coalescent paths or phenomena like organelle capture.
Publisher: Frontiers Media SA
ISBN: 2832538991
Category : Science
Languages : en
Pages : 233
Book Description
Phylogenetics often uncovers contradicting hypotheses regarding the relationships within the same group of organisms, a phenomenon known since the beginning of the molecular systematics era. While, historically, single marker-based analyses produced discordance, nowadays entire cellular genomes or portions of the same genomic compartment conflict with others or the rest, respectively. In contrast to the beginning of the molecular systematics era, when adding markers and taxa offered a way out of systematic errors, genome inference-based incongruences cannot be addressed and explained easily. Disagreeing phylogenomic hypotheses might originate from various evolutionary processes, including but not limited to hybridization or incomplete lineage sorting, thereby leading to gene tree-versus species tree-associated discrepancies. Today, this can be expanded to genome discordance, where phylogenomic signals of organellar genomes (plastid, mitochondrial) and the nuclear genome disagree due to intrinsically different coalescent paths or phenomena like organelle capture.
Caatinga
Author: José Maria Cardoso da Silva
Publisher: Springer
ISBN: 331968339X
Category : Science
Languages : en
Pages : 487
Book Description
This book provides in-depth information on Caatinga’s geographical boundaries and ecological systems, including plants, insects, fishes, amphibians, reptiles, birds, and mammals. It also discusses the major threats to the region’s socio-ecological systems and includes chapters on climate change and fast and large-scale land-use changes, as well as slow and small-scale changes, also known as chronic human disturbances. Subsequent chapters address sustainable agriculture, conservation systems, and sustainable development. Lastly, the book proposes 10 major actions that could enable the transformation of Caatinga into a place where people and nature can thrive together. “I consider this book an excellent example of how scientists worldwide can mobilize their efforts to propose sound solutions for one of the biggest challenges of modern times, i.e., how to protect the world’s natural ecosystems while improving human well-being. I am sure this book will inspire more research and conservation action in the region and perhaps encourage other groups of scientists to produce similar syntheses about their regions.” Russell Mittermeier, Ph.D. Executive Vice-Chair, Conservation International
Publisher: Springer
ISBN: 331968339X
Category : Science
Languages : en
Pages : 487
Book Description
This book provides in-depth information on Caatinga’s geographical boundaries and ecological systems, including plants, insects, fishes, amphibians, reptiles, birds, and mammals. It also discusses the major threats to the region’s socio-ecological systems and includes chapters on climate change and fast and large-scale land-use changes, as well as slow and small-scale changes, also known as chronic human disturbances. Subsequent chapters address sustainable agriculture, conservation systems, and sustainable development. Lastly, the book proposes 10 major actions that could enable the transformation of Caatinga into a place where people and nature can thrive together. “I consider this book an excellent example of how scientists worldwide can mobilize their efforts to propose sound solutions for one of the biggest challenges of modern times, i.e., how to protect the world’s natural ecosystems while improving human well-being. I am sure this book will inspire more research and conservation action in the region and perhaps encourage other groups of scientists to produce similar syntheses about their regions.” Russell Mittermeier, Ph.D. Executive Vice-Chair, Conservation International
Phylogeny and Evolution of the Angiosperms
Author: Douglas Soltis
Publisher: University of Chicago Press
ISBN: 022644175X
Category : Science
Languages : en
Pages : 587
Book Description
Although they are relative latecomers on the evolutionary scene, having emerged only 135?170 million years ago, angiosperms—or flowering plants—are the most diverse and species-rich group of seed-producing land plants, comprising more than 15,000 genera and over 350,000 species. Not only are they a model group for studying the patterns and processes of evolutionary diversification, they also play major roles in our economy, diet, and courtship rituals, producing our fruits, legumes, and grains, not to mention the flowers in our Valentine’s bouquets. They are also crucial ecologically, dominating most terrestrial and some aquatic landscapes. This fully revised edition of Phylogeny and Evolution of the Angiosperms provides an up-to-date, comprehensive overview of the evolution of and relationships among these vital plants. Incorporating molecular phylogenetics with morphological, chemical, developmental, and paleobotanical data, as well as presenting a more detailed account of early angiosperm fossils and important fossil information for each evolutionary branch of the angiosperms, the new edition integrates fossil evidence into a robust phylogenetic framework. Featuring a wealth of new color images, this highly synthetic work further reevaluates long-held evolutionary hypotheses related to flowering plants and will be an essential reference for botanists, plant systematists, and evolutionary biologists alike.
Publisher: University of Chicago Press
ISBN: 022644175X
Category : Science
Languages : en
Pages : 587
Book Description
Although they are relative latecomers on the evolutionary scene, having emerged only 135?170 million years ago, angiosperms—or flowering plants—are the most diverse and species-rich group of seed-producing land plants, comprising more than 15,000 genera and over 350,000 species. Not only are they a model group for studying the patterns and processes of evolutionary diversification, they also play major roles in our economy, diet, and courtship rituals, producing our fruits, legumes, and grains, not to mention the flowers in our Valentine’s bouquets. They are also crucial ecologically, dominating most terrestrial and some aquatic landscapes. This fully revised edition of Phylogeny and Evolution of the Angiosperms provides an up-to-date, comprehensive overview of the evolution of and relationships among these vital plants. Incorporating molecular phylogenetics with morphological, chemical, developmental, and paleobotanical data, as well as presenting a more detailed account of early angiosperm fossils and important fossil information for each evolutionary branch of the angiosperms, the new edition integrates fossil evidence into a robust phylogenetic framework. Featuring a wealth of new color images, this highly synthetic work further reevaluates long-held evolutionary hypotheses related to flowering plants and will be an essential reference for botanists, plant systematists, and evolutionary biologists alike.
The Genus Citrus
Author: Manuel Talon
Publisher: Woodhead Publishing
ISBN: 012812217X
Category : Technology & Engineering
Languages : en
Pages : 540
Book Description
The Genus Citrus presents the enormous amount of new knowledge that has been generated in recent years on nearly all topics related to citrus. Beginning with an overview of the fundamental principles and understanding of citrus biology and behavior, the book provides a comprehensive view from Citrus evolution to current market importance. Reporting on new insights supported by the elucidation of the citrus genome sequence, it presents groundbreaking theories and fills in previous knowledge gaps. Because citrus is among the most difficult plants to improve through traditional breeding, citrus researchers, institutions and industries must quickly learn to adapt to new developments, knowledge and technologies to address the biological constraints of a unique fruit-tree such as citrus. Despite the challenges of working with citrus, tremendous progress has been made, mostly through advances in molecular biology and genomics. This book is valuable for all those involved with researching and advancing, producing, processing, and delivering citrus products. - Includes the most current research on citrus genomic information - Provides the first detailed description of citrus origin, a new proposal for citrus taxonomy, and a redefinition of the genus Citrus - Details citrus challenges including climate change, global disease impacts, and plant improvement strategies
Publisher: Woodhead Publishing
ISBN: 012812217X
Category : Technology & Engineering
Languages : en
Pages : 540
Book Description
The Genus Citrus presents the enormous amount of new knowledge that has been generated in recent years on nearly all topics related to citrus. Beginning with an overview of the fundamental principles and understanding of citrus biology and behavior, the book provides a comprehensive view from Citrus evolution to current market importance. Reporting on new insights supported by the elucidation of the citrus genome sequence, it presents groundbreaking theories and fills in previous knowledge gaps. Because citrus is among the most difficult plants to improve through traditional breeding, citrus researchers, institutions and industries must quickly learn to adapt to new developments, knowledge and technologies to address the biological constraints of a unique fruit-tree such as citrus. Despite the challenges of working with citrus, tremendous progress has been made, mostly through advances in molecular biology and genomics. This book is valuable for all those involved with researching and advancing, producing, processing, and delivering citrus products. - Includes the most current research on citrus genomic information - Provides the first detailed description of citrus origin, a new proposal for citrus taxonomy, and a redefinition of the genus Citrus - Details citrus challenges including climate change, global disease impacts, and plant improvement strategies
DNA Fingerprinting in Plants
Author: Kurt Weising
Publisher: CRC Press
ISBN: 1420040049
Category : Science
Languages : en
Pages : 470
Book Description
Given the explosive development of new molecular marker techniques over the last decade, newcomers and experts alike in the field of DNA fingerprinting will find an easy-to-follow guide to the multitude of techniques available in DNA Fingerprinting in Plants: Principles, Methods, and Applications, Second Edition. Along with step-by-step annotated p
Publisher: CRC Press
ISBN: 1420040049
Category : Science
Languages : en
Pages : 470
Book Description
Given the explosive development of new molecular marker techniques over the last decade, newcomers and experts alike in the field of DNA fingerprinting will find an easy-to-follow guide to the multitude of techniques available in DNA Fingerprinting in Plants: Principles, Methods, and Applications, Second Edition. Along with step-by-step annotated p
Early Flowers and Angiosperm Evolution
Author: Else Marie Friis
Publisher: Cambridge University Press
ISBN: 1139496387
Category : Science
Languages : en
Pages : 597
Book Description
The recent discovery of diverse fossil flowers and floral organs in Cretaceous strata has revealed astonishing details about the structural and systematic diversity of early angiosperms. Exploring the rich fossil record that has accumulated over the last three decades, this is a unique study of the evolutionary history of flowering plants from their earliest phases in obscurity to their dominance in modern vegetation. The discussion provides comprehensive biological and geological background information, before moving on to summarise the fossil record in detail. Including previously unpublished results based on research into Early and Late Cretaceous fossil floras from Europe and North America, the authors draw on direct palaeontological evidence of the pattern of angiosperm evolution through time. Synthesising palaeobotanical data with information from living plants, this unique book explores the latest research in the field, highlighting connections with phylogenetic systematics, structure and the biology of extant angiosperms.
Publisher: Cambridge University Press
ISBN: 1139496387
Category : Science
Languages : en
Pages : 597
Book Description
The recent discovery of diverse fossil flowers and floral organs in Cretaceous strata has revealed astonishing details about the structural and systematic diversity of early angiosperms. Exploring the rich fossil record that has accumulated over the last three decades, this is a unique study of the evolutionary history of flowering plants from their earliest phases in obscurity to their dominance in modern vegetation. The discussion provides comprehensive biological and geological background information, before moving on to summarise the fossil record in detail. Including previously unpublished results based on research into Early and Late Cretaceous fossil floras from Europe and North America, the authors draw on direct palaeontological evidence of the pattern of angiosperm evolution through time. Synthesising palaeobotanical data with information from living plants, this unique book explores the latest research in the field, highlighting connections with phylogenetic systematics, structure and the biology of extant angiosperms.
Plastid Genome Evolution
Author:
Publisher: Academic Press
ISBN: 0128134585
Category : Science
Languages : en
Pages : 398
Book Description
Plastid Genome Evolution, Volume 85 provides a summary of recent research on plastid genome variation and evolution across photosynthetic organisms. It covers topics ranging from the causes and consequences of genomic changes, to the phylogenetic utility of plastomes for resolving relationships across the photosynthetic tree of life. This newly released volume presents thorough, up-to-date information on coevolution between the plastid and nuclear genomes, with chapters on plastid autonomy vs. nuclear control over plastid function, establishment and genetic integration of plastids, plastid genomes in alveolate protists, plastid genomes of glaucophytes, the evolution of the plastid genome in chlorophyte and streptophyte green algae, and more. - Provides comprehensive coverage of plastid genome variation by leading researchers in the field - Presents a broad range of taxonomic groups, ranging from single and multicellular algae, to the major clades of land plants - Includes thorough, up-to-date information on coevolution between the plastid and nuclear genomes
Publisher: Academic Press
ISBN: 0128134585
Category : Science
Languages : en
Pages : 398
Book Description
Plastid Genome Evolution, Volume 85 provides a summary of recent research on plastid genome variation and evolution across photosynthetic organisms. It covers topics ranging from the causes and consequences of genomic changes, to the phylogenetic utility of plastomes for resolving relationships across the photosynthetic tree of life. This newly released volume presents thorough, up-to-date information on coevolution between the plastid and nuclear genomes, with chapters on plastid autonomy vs. nuclear control over plastid function, establishment and genetic integration of plastids, plastid genomes in alveolate protists, plastid genomes of glaucophytes, the evolution of the plastid genome in chlorophyte and streptophyte green algae, and more. - Provides comprehensive coverage of plastid genome variation by leading researchers in the field - Presents a broad range of taxonomic groups, ranging from single and multicellular algae, to the major clades of land plants - Includes thorough, up-to-date information on coevolution between the plastid and nuclear genomes
Bioinformatics and Phylogenetics
Author: Tandy Warnow
Publisher: Springer
ISBN: 3030108376
Category : Computers
Languages : en
Pages : 426
Book Description
This volume presents a compelling collection of state-of-the-art work in algorithmic computational biology, honoring the legacy of Professor Bernard M.E. Moret in this field. Reflecting the wide-ranging influences of Prof. Moret’s research, the coverage encompasses such areas as phylogenetic tree and network estimation, genome rearrangements, cancer phylogeny, species trees, divide-and-conquer strategies, and integer linear programming. Each self-contained chapter provides an introduction to a cutting-edge problem of particular computational and mathematical interest. Topics and features: addresses the challenges in developing accurate and efficient software for the NP-hard maximum likelihood phylogeny estimation problem; describes the inference of species trees, covering strategies to scale phylogeny estimation methods to large datasets, and the construction of taxonomic supertrees; discusses the inference of ultrametric distances from additive distance matrices, and the inference of ancestral genomes under genome rearrangement events; reviews different techniques for inferring evolutionary histories in cancer, from the use of chromosomal rearrangements to tumor phylogenetics approaches; examines problems in phylogenetic networks, including questions relating to discrete mathematics, and issues of statistical estimation; highlights how evolution can provide a framework within which to understand comparative and functional genomics; provides an introduction to Integer Linear Programming and its use in computational biology, including its use for solving the Traveling Salesman Problem. Offering an invaluable source of insights for computer scientists, applied mathematicians, and statisticians, this illuminating volume will also prove useful for graduate courses on computational biology and bioinformatics.
Publisher: Springer
ISBN: 3030108376
Category : Computers
Languages : en
Pages : 426
Book Description
This volume presents a compelling collection of state-of-the-art work in algorithmic computational biology, honoring the legacy of Professor Bernard M.E. Moret in this field. Reflecting the wide-ranging influences of Prof. Moret’s research, the coverage encompasses such areas as phylogenetic tree and network estimation, genome rearrangements, cancer phylogeny, species trees, divide-and-conquer strategies, and integer linear programming. Each self-contained chapter provides an introduction to a cutting-edge problem of particular computational and mathematical interest. Topics and features: addresses the challenges in developing accurate and efficient software for the NP-hard maximum likelihood phylogeny estimation problem; describes the inference of species trees, covering strategies to scale phylogeny estimation methods to large datasets, and the construction of taxonomic supertrees; discusses the inference of ultrametric distances from additive distance matrices, and the inference of ancestral genomes under genome rearrangement events; reviews different techniques for inferring evolutionary histories in cancer, from the use of chromosomal rearrangements to tumor phylogenetics approaches; examines problems in phylogenetic networks, including questions relating to discrete mathematics, and issues of statistical estimation; highlights how evolution can provide a framework within which to understand comparative and functional genomics; provides an introduction to Integer Linear Programming and its use in computational biology, including its use for solving the Traveling Salesman Problem. Offering an invaluable source of insights for computer scientists, applied mathematicians, and statisticians, this illuminating volume will also prove useful for graduate courses on computational biology and bioinformatics.
Genomics of Chloroplasts and Mitochondria
Author: Ralph Bock
Publisher: Springer Science & Business Media
ISBN: 9400729200
Category : Science
Languages : en
Pages : 502
Book Description
The past decade has witnessed an explosion of our knowledge on the structure, coding capacity and evolution of the genomes of the two DNA-containing cell organelles in plants: chloroplasts (plastids) and mitochondria. Comparative genomics analyses have provided new insights into the origin of organelles by endosymbioses and uncovered an enormous evolutionary dynamics of organellar genomes. In addition, they have greatly helped to clarify phylogenetic relationships, especially in algae and early land plants with limited morphological and anatomical diversity. This book, written by leading experts, summarizes our current knowledge about plastid and mitochondrial genomes in all major groups of algae and land plants. It also includes chapters on endosymbioses, plastid and mitochondrial mutants, gene expression profiling and methods for organelle transformation. The book is designed for students and researchers in plant molecular biology, taxonomy, biotechnology and evolutionary biology.
Publisher: Springer Science & Business Media
ISBN: 9400729200
Category : Science
Languages : en
Pages : 502
Book Description
The past decade has witnessed an explosion of our knowledge on the structure, coding capacity and evolution of the genomes of the two DNA-containing cell organelles in plants: chloroplasts (plastids) and mitochondria. Comparative genomics analyses have provided new insights into the origin of organelles by endosymbioses and uncovered an enormous evolutionary dynamics of organellar genomes. In addition, they have greatly helped to clarify phylogenetic relationships, especially in algae and early land plants with limited morphological and anatomical diversity. This book, written by leading experts, summarizes our current knowledge about plastid and mitochondrial genomes in all major groups of algae and land plants. It also includes chapters on endosymbioses, plastid and mitochondrial mutants, gene expression profiling and methods for organelle transformation. The book is designed for students and researchers in plant molecular biology, taxonomy, biotechnology and evolutionary biology.