Practical Computing for Biologists PDF Download
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Author: Steven H.D. Haddock
Publisher: Sinauer
ISBN: 9780878933914
Category : Medical
Languages : en
Pages : 0
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Book Description
Practical Computing for Biologists shows you how to use many freely available computing tools to work more powerfully and effectively. The book was born out of the authors' own experience in developing tools for their research and helping other biologists with their computational problems. Many of the techniques are relevant to molecular bioinformatics but the scope of the book is much broader, covering topics and techniques that are applicable to a range of scientific endeavours. Twenty-two chapters organized into six parts address the following topics (and more; see Contents): • Searching with regular expressions • The Unix command line • Python programming and debugging • Creating and editing graphics • Databases • Performing analyses on remote servers • Working with electronics While the main narrative focuses on Mac OS X, most of the concepts and examples apply to any operating system. Where there are differences for Windows and Linux users, parallel instructions are provided in the margin and in an appendix. The book is designed to be used as a self-guided resource for researchers, a companion book in a course, or as a primary textbook. Practical Computing for Biologists will free you from the most frustrating and time-consuming aspects of data processing so you can focus on the pleasures of scientific inquiry.
Author: Steven H.D. Haddock
Publisher: Sinauer
ISBN: 9780878933914
Category : Medical
Languages : en
Pages : 0
Get Book Here
Book Description
Practical Computing for Biologists shows you how to use many freely available computing tools to work more powerfully and effectively. The book was born out of the authors' own experience in developing tools for their research and helping other biologists with their computational problems. Many of the techniques are relevant to molecular bioinformatics but the scope of the book is much broader, covering topics and techniques that are applicable to a range of scientific endeavours. Twenty-two chapters organized into six parts address the following topics (and more; see Contents): • Searching with regular expressions • The Unix command line • Python programming and debugging • Creating and editing graphics • Databases • Performing analyses on remote servers • Working with electronics While the main narrative focuses on Mac OS X, most of the concepts and examples apply to any operating system. Where there are differences for Windows and Linux users, parallel instructions are provided in the margin and in an appendix. The book is designed to be used as a self-guided resource for researchers, a companion book in a course, or as a primary textbook. Practical Computing for Biologists will free you from the most frustrating and time-consuming aspects of data processing so you can focus on the pleasures of scientific inquiry.
Author:
Publisher: Rex Bookstore, Inc.
ISBN: 9789712313165
Category :
Languages : en
Pages : 212
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Book Description
Author: Paul Gries
Publisher: Pragmatic Bookshelf
ISBN: 1680504126
Category : Computers
Languages : en
Pages : 554
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Book Description
Classroom-tested by tens of thousands of students, this new edition of the bestselling intro to programming book is for anyone who wants to understand computer science. Learn about design, algorithms, testing, and debugging. Discover the fundamentals of programming with Python 3.6--a language that's used in millions of devices. Write programs to solve real-world problems, and come away with everything you need to produce quality code. This edition has been updated to use the new language features in Python 3.6.
Author: Ahmed Fawzy Gad
Publisher: Apress
ISBN: 1484241673
Category : Computers
Languages : en
Pages : 421
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Book Description
Deploy deep learning applications into production across multiple platforms. You will work on computer vision applications that use the convolutional neural network (CNN) deep learning model and Python. This book starts by explaining the traditional machine-learning pipeline, where you will analyze an image dataset. Along the way you will cover artificial neural networks (ANNs), building one from scratch in Python, before optimizing it using genetic algorithms. For automating the process, the book highlights the limitations of traditional hand-crafted features for computer vision and why the CNN deep-learning model is the state-of-art solution. CNNs are discussed from scratch to demonstrate how they are different and more efficient than the fully connected ANN (FCNN). You will implement a CNN in Python to give you a full understanding of the model. After consolidating the basics, you will use TensorFlow to build a practical image-recognition model that you will deploy to a web server using Flask, making it accessible over the Internet. Using Kivy and NumPy, you will create cross-platform data science applications with low overheads. This book will help you apply deep learning and computer vision concepts from scratch, step-by-step from conception to production. What You Will Learn Understand how ANNs and CNNs work Create computer vision applications and CNNs from scratch using PythonFollow a deep learning project from conception to production using TensorFlowUse NumPy with Kivy to build cross-platform data science applications Who This Book Is ForData scientists, machine learning and deep learning engineers, software developers.
Author: Jeremy Howard
Publisher: O'Reilly Media
ISBN: 1492045497
Category : Computers
Languages : en
Pages : 624
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Book Description
Deep learning is often viewed as the exclusive domain of math PhDs and big tech companies. But as this hands-on guide demonstrates, programmers comfortable with Python can achieve impressive results in deep learning with little math background, small amounts of data, and minimal code. How? With fastai, the first library to provide a consistent interface to the most frequently used deep learning applications. Authors Jeremy Howard and Sylvain Gugger, the creators of fastai, show you how to train a model on a wide range of tasks using fastai and PyTorch. You’ll also dive progressively further into deep learning theory to gain a complete understanding of the algorithms behind the scenes. Train models in computer vision, natural language processing, tabular data, and collaborative filtering Learn the latest deep learning techniques that matter most in practice Improve accuracy, speed, and reliability by understanding how deep learning models work Discover how to turn your models into web applications Implement deep learning algorithms from scratch Consider the ethical implications of your work Gain insight from the foreword by PyTorch cofounder, Soumith Chintala
Author: Kurt Demaagd
Publisher: "O'Reilly Media, Inc."
ISBN: 1449320368
Category : Computers
Languages : en
Pages : 255
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Book Description
Learn how to build your own computer vision (CV) applications quickly and easily with SimpleCV, an open source framework written in Python. Through examples of real-world applications, this hands-on guide introduces you to basic CV techniques for collecting, processing, and analyzing streaming digital images. You'll then learn how to apply these methods with SimpleCV, using sample Python code. All you need to get started is a Windows, Mac, or Linux system, and a willingness to put CV to work in a variety of ways. Programming experience is optional. Capture images from several sources, including webcams, smartphones, and Kinect Filter image input so your application processes only necessary information Manipulate images by performing basic arithmetic on pixel values Use feature detection techniques to focus on interesting parts of an image Work with several features in a single image, using the NumPy and SciPy Python libraries Learn about optical flow to identify objects that change between two image frames Use SimpleCV's command line and code editor to run examples and test techniques
Author: Stefano Allesina
Publisher: Princeton University Press
ISBN: 0691182752
Category : Computers
Languages : en
Pages : 440
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Book Description
A concise introduction to key computing skills for biologists While biological data continues to grow exponentially in size and quality, many of today’s biologists are not trained adequately in the computing skills necessary for leveraging this information deluge. In Computing Skills for Biologists, Stefano Allesina and Madlen Wilmes present a valuable toolbox for the effective analysis of biological data. Based on the authors’ experiences teaching scientific computing at the University of Chicago, this textbook emphasizes the automation of repetitive tasks and the construction of pipelines for data organization, analysis, visualization, and publication. Stressing practice rather than theory, the book’s examples and exercises are drawn from actual biological data and solve cogent problems spanning the entire breadth of biological disciplines, including ecology, genetics, microbiology, and molecular biology. Beginners will benefit from the many examples explained step-by-step, while more seasoned researchers will learn how to combine tools to make biological data analysis robust and reproducible. The book uses free software and code that can be run on any platform. Computing Skills for Biologists is ideal for scientists wanting to improve their technical skills and instructors looking to teach the main computing tools essential for biology research in the twenty-first century. Excellent resource for acquiring comprehensive computing skills Both novice and experienced scientists will increase efficiency by building automated and reproducible pipelines for biological data analysis Code examples based on published data spanning the breadth of biological disciplines Detailed solutions provided for exercises in each chapter Extensive companion website
Author: Javad Shabani
Publisher: World Scientific
ISBN: 9811253218
Category : Computers
Languages : en
Pages : 302
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Book Description
Quantum information is a young and evolving field. This compendium introduces quantum information in a comprehensive self-contained guide without assuming a wealth of knowledge prior to reading.The volume highlights intuition on counterintuitive topics such as quantum mechanics, basic mathematical tools and calculations involving linear algebra, and applies these concepts to quantum information with guided problems and coding exercises.This applied guide largely benefits mid-level undergraduates and perhaps motivated high schoolers.
Author: John MacCormick
Publisher: Princeton University Press
ISBN: 0691170665
Category : Computers
Languages : en
Pages : 404
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Book Description
An accessible and rigorous textbook for introducing undergraduates to computer science theory What Can Be Computed? is a uniquely accessible yet rigorous introduction to the most profound ideas at the heart of computer science. Crafted specifically for undergraduates who are studying the subject for the first time, and requiring minimal prerequisites, the book focuses on the essential fundamentals of computer science theory and features a practical approach that uses real computer programs (Python and Java) and encourages active experimentation. It is also ideal for self-study and reference. The book covers the standard topics in the theory of computation, including Turing machines and finite automata, universal computation, nondeterminism, Turing and Karp reductions, undecidability, time-complexity classes such as P and NP, and NP-completeness, including the Cook-Levin Theorem. But the book also provides a broader view of computer science and its historical development, with discussions of Turing's original 1936 computing machines, the connections between undecidability and Gödel's incompleteness theorem, and Karp's famous set of twenty-one NP-complete problems. Throughout, the book recasts traditional computer science concepts by considering how computer programs are used to solve real problems. Standard theorems are stated and proven with full mathematical rigor, but motivation and understanding are enhanced by considering concrete implementations. The book's examples and other content allow readers to view demonstrations of—and to experiment with—a wide selection of the topics it covers. The result is an ideal text for an introduction to the theory of computation. An accessible and rigorous introduction to the essential fundamentals of computer science theory, written specifically for undergraduates taking introduction to the theory of computation Features a practical, interactive approach using real computer programs (Python in the text, with forthcoming Java alternatives online) to enhance motivation and understanding Gives equal emphasis to computability and complexity Includes special topics that demonstrate the profound nature of key ideas in the theory of computation Lecture slides and Python programs are available at whatcanbecomputed.com
Author: Ronald T. Kneusel
Publisher: No Starch Press
ISBN: 1718500742
Category : Computers
Languages : en
Pages : 463
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Book Description
Practical Deep Learning teaches total beginners how to build the datasets and models needed to train neural networks for your own DL projects. If you’ve been curious about artificial intelligence and machine learning but didn’t know where to start, this is the book you’ve been waiting for. Focusing on the subfield of machine learning known as deep learning, it explains core concepts and gives you the foundation you need to start building your own models. Rather than simply outlining recipes for using existing toolkits, Practical Deep Learning teaches you the why of deep learning and will inspire you to explore further. All you need is basic familiarity with computer programming and high school math—the book will cover the rest. After an introduction to Python, you’ll move through key topics like how to build a good training dataset, work with the scikit-learn and Keras libraries, and evaluate your models’ performance. You’ll also learn: How to use classic machine learning models like k-Nearest Neighbors, Random Forests, and Support Vector Machines How neural networks work and how they’re trained How to use convolutional neural networks How to develop a successful deep learning model from scratch You’ll conduct experiments along the way, building to a final case study that incorporates everything you’ve learned. The perfect introduction to this dynamic, ever-expanding field, Practical Deep Learning will give you the skills and confidence to dive into your own machine learning projects.
