Basic Phylogenetic Combinatorics PDF Download
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Author: Andreas Dress
Publisher: Cambridge University Press
ISBN: 0521768322
Category : Mathematics
Languages : en
Pages : 277
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Book Description
The first book to systematically introduce the emerging area of phylogenetic combinatorics.
Author: Andreas Dress
Publisher: Cambridge University Press
ISBN: 0521768322
Category : Mathematics
Languages : en
Pages : 277
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Book Description
The first book to systematically introduce the emerging area of phylogenetic combinatorics.
Author: Andreas Dress
Publisher:
ISBN: 9783832274818
Category :
Languages : en
Pages : 206
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Book Description
Author: Dan Gusfield
Publisher: MIT Press
ISBN: 0262324482
Category : Mathematics
Languages : en
Pages : 601
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Book Description
Combinatorial structure and algorithms for deducing genetic recombination history, represented by ancestral recombination graphs and other networks, and their role in the emerging field of phylogenetic networks. In this book, Dan Gusfield examines combinatorial algorithms to construct genealogical and exact phylogenetic networks, particularly ancestral recombination graphs (ARGs). The algorithms produce networks (or information about networks) that serve as hypotheses about the true genealogical history of observed biological sequences and can be applied to practical biological problems. Phylogenetic trees have been the traditional means to represent evolutionary history, but there is a growing realization that networks rather than trees are often needed, most notably for recent human history. This has led to the development of ARGs in population genetics and, more broadly, to phylogenetic networks. ReCombinatorics offers an in-depth, rigorous examination of current research on the combinatorial, graph-theoretic structure of ARGs and explicit phylogenetic networks, and algorithms to reconstruct or deduce information about those networks. ReCombinatorics, a groundbreaking contribution to the emerging field of phylogenetic networks, connects and unifies topics in population genetics and phylogenetics that have traditionally been discussed separately and considered to be unrelated. It covers the necessary combinatorial and algorithmic background material; the various biological phenomena; the mathematical, population genetic, and phylogenetic models that capture the essential elements of these phenomena; the combinatorial and algorithmic problems that derive from these models; the theoretical results that have been obtained; related software that has been developed; and some empirical testing of the software on simulated and real biological data.
Author: Dan Gusfield
Publisher: MIT Press
ISBN: 0262027526
Category : Mathematics
Languages : en
Pages : 601
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Book Description
When a Philadelphia girl intercepts a message about an impending British attack against her father's regiment, commanded by General Washington, in White Marsh, she travels alone by horseback to warn the Patriot army.
Author: Guillaume Fertin
Publisher: MIT Press
ISBN: 0262062828
Category : Combinatorial analysis
Languages : en
Pages : 305
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Book Description
A comprehensive survey of a rapidly expanding field of combinatorial optimization, mathematically oriented but offering biological explanations when required. From one cell to another, from one individual to another, and from one species to another, the content of DNA molecules is often similar. The organization of these molecules, however, differs dramatically, and the mutations that affect this organization are known as genome rearrangements. Combinatorial methods are used to reconstruct putative rearrangement scenarios in order to explain the evolutionary history of a set of species, often formalizing the evolutionary events that can explain the multiple combinations of observed genomes as combinatorial optimization problems. This book offers the first comprehensive survey of this rapidly expanding application of combinatorial optimization. It can be used as a reference for experienced researchers or as an introductory text for a broader audience. Genome rearrangement problems have proved so interesting from a combinatorial point of view that the field now belongs as much to mathematics as to biology. This book takes a mathematically oriented approach, but provides biological background when necessary. It presents a series of models, beginning with the simplest (which is progressively extended by dropping restrictions), each constructing a genome rearrangement problem. The book also discusses an important generalization of the basic problem known as the median problem, surveys attempts to reconstruct the relationships between genomes with phylogenetic trees, and offers a collection of summaries and appendixes with useful additional information.
Author: Thang N. Dinh
Publisher: Springer
ISBN: 3319426346
Category : Computers
Languages : en
Pages : 629
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Book Description
This book constitutes the refereed proceedings of the 22nd International Conference on Computing and Combinatorics, COCOON 2016, held in Ho Chi Minh City, Vietnam, in August 2016. The 50 revised full papers papers presented in this book were carefully reviewed and selected from various submissions. The papers cover various topics including: Theory and Algorithms; Parameterized Complexity and Algorithms; Database and Data Structures; Computational Complexity; Approximation Algorithms; Cryptography; Network and Algorithms; Graph Theory and Algorithms; Computational Geometry; Scheduling Algorithms and Circuit Complexity; Computational Geometry and Computational Biology; and Logic, Algebra and Automata.
Author: Vincent Moulton
Publisher:
ISBN:
Category :
Languages : en
Pages :
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Book Description
Author: Naruya Saitou
Publisher: Springer
ISBN: 331992642X
Category : Computers
Languages : en
Pages : 504
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Book Description
This authoritative textbook/reference presents a comprehensive introduction to the field of evolutionary genomics. The opening chapters describe the fundamental concepts in molecular biology and genome evolution for readers without any prior background in this area. This is followed by a detailed examination of genome evolution in various different groups of organisms. The text then concludes with a review of practical methods essential to researchers in the field. This updated and revised new edition also features historical perspectives on contributions to evolutionary genomics from related fields such as molecular evolution, genetics, and numerical taxonomy. Topics and features: introduces the basics of molecular biology, covering protein structure and diversity, as well as DNA replication, transcription, and translation; examines the phylogenetic relationships of DNA sequences, and the processes of mutation, neutral evolution, and natural selection; presents a brief evolutionary history of life, surveying the key features of the genomes of prokaryotes, eukaryotes, viruses and phages, vertebrates, and humans; reviews the various biological “omic” databases, and discusses the analysis of homologous nucleotide and amino acid sequences; provides an overview of the experimental sequencing of genomes and transcriptomes, and the construction of phylogenetic trees; describes methods for estimating of evolutionary distances, and performing studies of population genetics; supplies additional supporting material at an associated website. Serving as an indispensable textbook for graduate and advanced undergraduate courses on evolutionary genomics, this accessible overview will also prove invaluable to researchers from both computer science and the biological sciences seeking a primer on the field.
Author: Xiaodong Hu
Publisher: Springer Science & Business Media
ISBN: 3540697322
Category : Computers
Languages : en
Pages : 692
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Book Description
The refereed proceedings of the 14th Annual International Computing and Combinatorics Conference, COCOON 2008, held in Dalian, China, in June 2008. The 66 revised full papers presented were carefully reviewed and selected from 172 submissions. The papers are organized in topical sections on algorithms and data structures, algorithmic game theory and online algorithms, automata, languages, logic, and computability, combinatorics related to algorithms and complexity, complexity theory, cryptography, reliability and security, and database theory, computational biology and bioinformatics, computational algebra, geometry, and number theory, graph drawing and information visualization, graph theory and algorithms, communication networks, and optimization, wireless network, network optimization, and scheduling problem.
Author: Guohui Lin
Publisher: Springer Science & Business Media
ISBN: 3540735445
Category : Computers
Languages : en
Pages : 580
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Book Description
The refereed proceedings of the 13th Annual International Computing and Combinatorics Conference, COCOON 2007, held in Banff, Canada in July 2007. The 51 revised full papers presented together with abstracts of 3 invited talks were carefully reviewed and selected from 154 submissions. The papers feature original research works in the areas of algorithms, theory of computation, computational complexity, and combinatorics related to computing.
