Order and Fluctuations in Collective Dynamics of Swimming Bacteria PDF Download
Are you looking for read ebook online? Search for your book and save it on your Kindle device, PC, phones or tablets. Download Order and Fluctuations in Collective Dynamics of Swimming Bacteria PDF full book. Access full book title Order and Fluctuations in Collective Dynamics of Swimming Bacteria by Daiki Nishiguchi. Download full books in PDF and EPUB format.
Author: Daiki Nishiguchi
Publisher: Springer Nature
ISBN: 9813299983
Category : Science
Languages : en
Pages : 137
Get Book Here
Book Description
This thesis focuses on experimental studies on collective motion using swimming bacteria as model active-matter systems. It offers comprehensive reviews of state-of-the-art theories and experiments on collective motion from the viewpoint of nonequilibrium statistical physics. The author presents his experimental studies on two major classes of collective motion that had been well studied theoretically. Firstly, swimming filamentous bacteria in a thin fluid layer are shown to exhibit true, long-range orientational order and anomalously strong giant density fluctuations, which are considered universal and landmark signatures of collective motion by many numerical and theoretical works but have never been observed in real systems. Secondly, chaotic bacterial turbulence in a three-dimensional dense suspension without any long-range order as described in the first half is demonstrated to be capable of achieving antiferromagnetic vortex order by imposing a small number of constraints with appropriate periodicity. The experimental results presented significantly advance our fundamental understanding of order and fluctuations in collective motion of motile elements and their future applications.
Author: Daiki Nishiguchi
Publisher: Springer Nature
ISBN: 9813299983
Category : Science
Languages : en
Pages : 137
Get Book Here
Book Description
This thesis focuses on experimental studies on collective motion using swimming bacteria as model active-matter systems. It offers comprehensive reviews of state-of-the-art theories and experiments on collective motion from the viewpoint of nonequilibrium statistical physics. The author presents his experimental studies on two major classes of collective motion that had been well studied theoretically. Firstly, swimming filamentous bacteria in a thin fluid layer are shown to exhibit true, long-range orientational order and anomalously strong giant density fluctuations, which are considered universal and landmark signatures of collective motion by many numerical and theoretical works but have never been observed in real systems. Secondly, chaotic bacterial turbulence in a three-dimensional dense suspension without any long-range order as described in the first half is demonstrated to be capable of achieving antiferromagnetic vortex order by imposing a small number of constraints with appropriate periodicity. The experimental results presented significantly advance our fundamental understanding of order and fluctuations in collective motion of motile elements and their future applications.
Author: Shuang Zhou
Publisher: Springer
ISBN: 3319528068
Category : Science
Languages : en
Pages : 112
Get Book Here
Book Description
This thesis describes lyotropic chromonic liquid crystals (LCLCs) with exotic elastic and viscous properties. The first part of the thesis presents a thorough analysis of the elastic and viscous properties of LCLCs as functions of concentration, temperature and ionic contents, while the second part explores an active nematic system: living liquid crystals, which represent a combination of LCLC and living bacteria. LCLCs are an emerging class of liquid crystals that have shown profound connections to biological systems in two aspects. First, the assembly process of the chromonic aggregates is essentially the same as DNA oligomers and other super-molecular assemblies of biological origin. LCLCs thus provide an excellent model system for studying physical properties such as the elasticity and viscosity of these supramolecular assemblies. Second, LCLCs are biocompatible, thus serving as a unique anisotropic matrix to interface with living systems such as bacteria. This thesis deepens our understanding of both aspects. The noncovalent nature of chromonic aggregation produces the unique viscoelasticity to be found in LCLCs, which differs dramatically from that of traditional LCs. Anisotropic interactions between LCLCs and bacteria lead to fascinating phenomena such as the deformation of LCLCs with a characteristic wavelength determined by the elasticity of the LCLCs and the activity of the bacteria, orientationally controlled trajectories of bacteria and visualization of 24 nm flagella motion.
Author: Graham Taylor
Publisher: Springer Science & Business Media
ISBN: 3642116337
Category : Science
Languages : en
Pages : 433
Get Book Here
Book Description
The physical principles of swimming and flying in animals are intriguingly different from those of ships and airplanes. The study of animal locomotion therefore holds a special place not only at the frontiers of pure fluid dynamics research, but also in the applied field of biomimetics, which aims to emulate salient aspects of the performance and function of living organisms. For example, fluid dynamic loads are so significant for swimming fish that they are expected to have developed efficient flow control procedures through the evolutionary process of adaptation by natural selection, which might in turn be applied to the design of robotic swimmers. And yet, sharply contrasting views as to the energetic efficiency of oscillatory propulsion – especially for marine animals – demand a careful assessment of the forces and energy expended at realistic Reynolds numbers. For this and many other research questions, an experimental approach is often the most appropriate methodology. This holds as much for flying animals as it does for swimming ones, and similar experimental challenges apply – studying tethered as opposed to free locomotion, or studying the flow around robotic models as opposed to real animals. This book provides a wide-ranging snapshot of the state-of-the-art in experimental research on the physics of swimming and flying animals. The resulting picture reflects not only upon the questions that are of interest in current pure and applied research, but also upon the experimental techniques that are available to answer them.
Author: Stephen Childress
Publisher: Springer Science & Business Media
ISBN: 1461439973
Category : Mathematics
Languages : en
Pages : 316
Get Book Here
Book Description
This volume developed from a Workshop on Natural Locomotion in Fluids and on Surfaces: Swimming, Flying, and Sliding which was held at the Institute for Mathematics and its Applications (IMA) at the University of Minnesota, from June 1-5, 2010. The subject matter ranged widely from observational data to theoretical mechanics, and reflected the broad scope of the workshop. In both the prepared presentations and in the informal discussions, the workshop engaged exchanges across disciplines and invited a lively interaction between modelers and observers. The articles in this volume were invited and fully refereed. They provide a representative if necessarily incomplete account of the field of natural locomotion during a period of rapid growth and expansion. The papers presented at the workshop, and the contributions to the present volume, can be roughly divided into those pertaining to swimming on the scale of marine organisms, swimming of microorganisms at low Reynolds numbers, animal flight, and sliding and other related examples of locomotion.
Author: Henning Reinken
Publisher: Springer Nature
ISBN: 303167636X
Category :
Languages : en
Pages : 233
Get Book Here
Book Description
Author: Pawel Romanczuk
Publisher: Logos Verlag Berlin GmbH
ISBN: 383252990X
Category : Science
Languages : en
Pages : 160
Get Book Here
Book Description
Recently, there has been an increasing focus on various biological and physical systems known as "active matter". Examples of such systems range from individual units, such as motile cells or artificial self-propelled particles, to large systems of interacting active particles or individuals. The emergence of large-scale collective motion, as exhibited by flocks of birds or bacterial colonies, is just one prominent and fascinating example of self-organization in active matter systems. In this work, we discuss different individual-based models of active matter using the concept of active Brownian motion. The first part of this work explores the dynamical behavior of single active particles with a particular emphasis on the impact of so-called active fluctuations. The second part extends the scope of this study to interacting active Brownian particles and their collective behavior. First, a systematic derivation of kinetic equations for active Brownian particles with velocity alignment is presented. Further on, motivated by recent biological observations, a new type of "escape-pursuit" model of collective motion is introduced and successfully employed in modeling collective locust behavior.
Author: Cécile Appert-Rolland
Publisher: Springer Science & Business Media
ISBN: 3540770747
Category : Mathematics
Languages : en
Pages : 758
Get Book Here
Book Description
Covers several research fields dealing with transport. This work covers three main topics including road traffic, granular matter, and biological transport. It considers different points of views including modelling, simulations, experiments, and phenomenological observations.
Author: Eric Lauga
Publisher: Cambridge University Press
ISBN: 1107174651
Category : Science
Languages : en
Pages : 391
Get Book Here
Book Description
A pedagogical review of the mathematical modelling in fluid dynamics necessary to understand the motility of most microorganisms on Earth.
Author: Martine Ben Amar
Publisher: OUP Oxford
ISBN: 0191621803
Category : Mathematics
Languages : en
Pages : 380
Get Book Here
Book Description
In July 2009, many experts in the mathematical modelling of biological sciences gathered in Les Houches for a 4-week summer school on the mechanics and physics of biological systems. The goal of the school was to present to students and researchers an integrated view of new trends and challenges in physical and mathematical aspects of biomechanics. While the scope for such a topic is very wide, we focused on problems where solid and fluid mechanics play a central role. The school covered both the general mathematical theory of mechanical biology in the context of continuum mechanics but also the specific modelling of particular systems in the biology of the cell, plants, microbes, and in physiology. These lecture notes are organised (as was the school) around five different main topics all connected by the common theme of continuum modelling for biological systems: Bio-fluidics, Bio-gels, Bio-mechanics, Bio-membranes, and Morphogenesis. These notes are not meant as a journal review of the topic but rather as a gentle tutorial introduction to the readers who want to understand the basic problematic in modelling biological systems from a mechanics perspective.
Author: M. Ben Amar
Publisher:
ISBN: 0199605831
Category : Mathematics
Languages : en
Pages : 380
Get Book Here
Book Description
"In July 2009, many experts in the mathematical modeling of biological sciences gathered in Les Houches for a 4-week summer school on the mechanics and physics of biological systems. The goal of the school was to present to students and researchers an integrated view of new trends and challenges in physical and mathematical aspects of biomechanics. While the scope for such a topic is very wide, they focused on problems where solid and fluid mechanics play a central role. The school covered both the general mathematical theory of mechanical biology in the context of continuum mechanics but also the specific modeling of particular systems in the biology of the cell, plants, microbes, and in physiology. These lecture notes are organized (as was the school) around five different main topics all connected by the common theme of continuum modeling for biological systems: Bio-fluidics, Bio-gels, Bio-mechanics, Bio-membranes, and Morphogenesis. These notes are not meant as a journal review of the topic but rather as a gentle tutorial introduction to the readers who want to understand the basic problematic in modeling biological systems from a mechanics perspective"--
