Exploration on Quantum Chemical Potential Energy Surfaces

Exploration on Quantum Chemical Potential Energy Surfaces PDF Author: Koichi Ohno
Publisher: Royal Society of Chemistry
ISBN: 1839164905
Category : Science
Languages : en
Pages : 273

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Book Description
Providing several examples, this book describes fundamental methods and techniques specific for efficient exploration on the potential energy surface by quantum chemical calculations.

Exploration on Quantum Chemical Potential Energy Surfaces

Exploration on Quantum Chemical Potential Energy Surfaces PDF Author: Koichi Ohno
Publisher: Royal Society of Chemistry
ISBN: 1839164905
Category : Science
Languages : en
Pages : 273

Get Book Here

Book Description
Providing several examples, this book describes fundamental methods and techniques specific for efficient exploration on the potential energy surface by quantum chemical calculations.

Exploration on Quantum Chemical Potential Energy Surfaces

Exploration on Quantum Chemical Potential Energy Surfaces PDF Author: Koichi Ohno
Publisher: Royal Society of Chemistry
ISBN: 1839167750
Category : Science
Languages : en
Pages : 255

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Book Description
Written chemical formulas, such as C2H6O, can tell us the constituent atoms a molecule contains but they cannot differentiate between the possible geometrical arrangements (isomers) of these models. Yet the chemical properties of different isomers can vary hugely. Therefore, to understand the world of chemistry we need to ask what kind of isomers can be produced from a given atomic composition, how are isomers converted into each other, how do they decompose into smaller pieces, and how can they be made from smaller pieces? The answers to these questions will help us to discover new chemistry and new molecules. A potential energy surface (PES) describes a system, such as a molecule, based on geometrical parameters. The mathematical properties of the PES can be used to calculate probable isomer structures as well as how they are formed and how they might behave. Exploration on Quantum Chemical Potential Energy Surfaces focuses on the PES search based on quantum chemical calculations. It describes how to explore the chemical world on PES, discusses fundamental methods and specific techniques developed for efficient exploration on PES, and demonstrates several examples of the PES search for chemical structures and reaction routes.

Ab Initio Molecular Dynamics Analysis Based on Reduced-Dimensionality Reaction Route Map

Ab Initio Molecular Dynamics Analysis Based on Reduced-Dimensionality Reaction Route Map PDF Author: Takuro Tsutsumi
Publisher: Springer Nature
ISBN: 981997321X
Category : Science
Languages : en
Pages : 123

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Book Description
This thesis proposes useful tools, on-the-fly trajectory mapping method and Reaction Space Projector (ReSPer), to analyze chemical reaction mechanisms by combining the reaction route map and the ab initio molecular dynamics. The key concept for the proposed tools is the Cartesian distance between pairwise molecular structures, and a practical procedure to get the optimal distance is introduced. The on-the-fly trajectory mapping method tracks the distance function between reference structures and molecular structures along the trajectory. Although this method provides fruitful insight into dynamic reaction behaviors, the visualization of reaction routes into a low-dimensional space is still challenging because of the multi-dimensionality. ReSPer successfully constructs a low-dimensional reaction space defined by mathematically-selected principal coordinates representing mutual distance relationships in the full-dimensional space. ReSPer also enables us to project trajectories into the reaction space in the reduced dimension. In this thesis, these methods are applied to several reactions, including bifurcating and photochemical reactions, revealing dynamically-allowed reaction mechanisms. This thesis provides robust and versatile tools to elucidate dynamical reaction routes on the basis of the reduced-dimensionality reaction route map and will help control chemical reaction dynamics and select descriptors for machine learning.

New Horizons in Computational Chemistry Software

New Horizons in Computational Chemistry Software PDF Author: Michael Filatov
Publisher: Springer Nature
ISBN: 3031076583
Category : Science
Languages : en
Pages : 316

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Book Description
This volume presents the current status of software development in the field of computational and theoretical chemistry and gives an overview of the emerging trends. The challenges of maintaining the legacy codes and their adaptation to the rapidly growing hardware capabilities and the new programming environments are surveyed in a series of topical reviews written by the core developers and maintainers of the popular quantum chemistry and molecular dynamics programs. Special emphasis is given to new computational methodologies and practical aspects of their implementation and application in the computational chemistry codes. Modularity of the computational chemistry software is an emerging concept that enables to bypass the development and maintenance bottleneck of the legacy software and to customize the software using the best available computational procedures implemented in the form of self-contained modules. Perspectives on modular design of the computer programs for modeling molecular electronic structure, non-adiabatic dynamics, kinetics, as well as for data visualization are presented by the researchers actively working in the field of software development and application. This volume is of interest to quantum and computational chemists as well as experimental chemists actively using and developing computational software for their research. Chapters "MLatom 2: An Integrative Platform for Atomistic Machine Learning” and “Evolution of the Automatic Rhodopsin Modeling (ARM) Protocol" are available open access under a CC BY 4.0 License via link.springer.com.

Drug Development Supported by Informatics

Drug Development Supported by Informatics PDF Author: Hiroko Satoh
Publisher: Springer Nature
ISBN: 9819748283
Category :
Languages : en
Pages : 358

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Book Description


Cheminformatics and Bioinformatics at the Interface with Systems Biology

Cheminformatics and Bioinformatics at the Interface with Systems Biology PDF Author: Aman Chandra Kaushik
Publisher: Royal Society of Chemistry
ISBN: 1839161620
Category : Science
Languages : en
Pages : 281

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Book Description


Machine Learning and Hybrid Modelling for Reaction Engineering

Machine Learning and Hybrid Modelling for Reaction Engineering PDF Author: Dongda Zhang
Publisher: Royal Society of Chemistry
ISBN: 1839165634
Category : Science
Languages : en
Pages : 441

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Book Description


Structural Dynamics with X-ray and Electron Scattering

Structural Dynamics with X-ray and Electron Scattering PDF Author: Kasra Amini
Publisher: Royal Society of Chemistry
ISBN: 1837671141
Category : Science
Languages : en
Pages : 671

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Book Description


Advances in the Theory of Quantum Systems in Chemistry and Physics

Advances in the Theory of Quantum Systems in Chemistry and Physics PDF Author: Philip E. Hoggan
Publisher: Springer Science & Business Media
ISBN: 9400720769
Category : Science
Languages : en
Pages : 630

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Book Description
Advances in the Theory of Quantum Systems in Chemistry and Physics is a collection of 32 selected papers from the scientific contributions presented at the 15th International Workshop on Quantum Systems in Chemistry and Physics (QSCP-XV), held at Magdalene College, Cambridge, UK, from August 31st to September 5th, 2010. This volume discusses the state of the art, new trends, and the future of methods in molecular quantum mechanics and their applications to a wide range of problems in chemistry, physics, and biology. The breadth and depth of the scientific topics discussed during QSCP-XV are gathered in seven sections: I. Fundamental Theory; II. Model Atoms; III. Atoms and Molecules with Exponential-Type Orbitals; IV. Density-Oriented Methods; V. Dynamics and Quantum Monte-Carlo Methodology; VI. Structure and Reactivity; VII. Complex Systems, Solids, Biophysics. Advances in the Theory of Quantum Systems in Chemistry and Physics is written for research students and professionals in Quantum systems of chemistry and physics. It also constitutes and invaluable guide for those wishing to familiarize themselves with research perspectives in the domain of quantum systems for thematic conversion or simply to gain insight into the methodological developments and applications to physics chemistry and biology that have actually become feasible by the end of 2010.

Properties of Chemically Interesting Potential Energy Surfaces

Properties of Chemically Interesting Potential Energy Surfaces PDF Author: Dietmar Heidrich
Publisher: Springer Science & Business Media
ISBN: 3642934994
Category : Science
Languages : en
Pages : 193

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Book Description
Contemporary chemical reaction theory is the characterization of Potential Energy Hypersurfaces (PES). The authors critically analyze chemically and mathematically suitable reaction path definitions. The book presents a simple mathematical analysis of stationary and critical points of the PES. It provides tools for studying chemical reactions by calculating reaction paths and related curves. A further aspect of the book is the dependence of PES properties on approximations used for the analysis. Recent quantum chemical calculations, particularly of single proton transfer processes, and experimental data are compared. The book addresses students and researchers in Theoretical Chemistry, Chemical Kinetics and related fields.