Effects of Confinement on Water Structure and Dynamics and on Proton Transport

Effects of Confinement on Water Structure and Dynamics and on Proton Transport PDF Author: Pussana Hirunsit
Publisher:
ISBN:
Category :
Languages : en
Pages :

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Book Description
Classical molecular dynamics (MD) simulations are performed to study structural and dynamic properties of water confined within graphite surfaces. The surfaces are separated at distances varying between 7 and 14.5 Å and the water density is held constant at 1g/cc. Results at 298 K show the formation of a well-ordered structure constituted by water layers parallel to the graphite surfaces. The water molecules in the layers in contact with the surface have a tendency to orient their dipole parallel to the surface. Such ice-like structures may have different structural and dynamic properties than those of ice. The calculated mean square displacement reveals that the mobilities of the confined water at a separation of 8 Å become similar to that of low-temperature water (213 K) at the same density, although the structures of water are very different. The temperature at which the mobility of water confined at the separation of 7 Å would become similar to that of bulk low-temperature water was found to be 373K. With respect to the dynamics of confined water, a significant blue shift is observed in the intermolecular vibrational modes associated with the O···O···O bending and O···O stretching of molecules linked by hydrogen bonds. The analysis of the geometry of water clusters confined between two graphite surfaces has been performed using ab initio methods. The ab initio calculations yield two preferential orientations of water molecules which are; 1) one O-H bond points to the surface and the other is parallel; 2) both O-H bonds are parallel to the surface. These orientations agree with those found in our MD simulation results. The calculated energy barriers for proton transfer of the confined H3O-(H2O) complexes between two graphite model surfaces suggest that the confinement enhances the proton transfer at the separation 6-14.5 Å. When the confinement is high, at a separation of 4 Å, the barrier energies are extremely large. The confinement does not enhance proton transfer when the H3O-(H2O) complexes are located further from the surfaces by more than 8 Å. As a result, the barrier energies start to increase at the separation of 20 Å.

Effects of Confinement on Water Structure and Dynamics and on Proton Transport

Effects of Confinement on Water Structure and Dynamics and on Proton Transport PDF Author: Pussana Hirunsit
Publisher:
ISBN:
Category :
Languages : en
Pages :

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Book Description
Classical molecular dynamics (MD) simulations are performed to study structural and dynamic properties of water confined within graphite surfaces. The surfaces are separated at distances varying between 7 and 14.5 Å and the water density is held constant at 1g/cc. Results at 298 K show the formation of a well-ordered structure constituted by water layers parallel to the graphite surfaces. The water molecules in the layers in contact with the surface have a tendency to orient their dipole parallel to the surface. Such ice-like structures may have different structural and dynamic properties than those of ice. The calculated mean square displacement reveals that the mobilities of the confined water at a separation of 8 Å become similar to that of low-temperature water (213 K) at the same density, although the structures of water are very different. The temperature at which the mobility of water confined at the separation of 7 Å would become similar to that of bulk low-temperature water was found to be 373K. With respect to the dynamics of confined water, a significant blue shift is observed in the intermolecular vibrational modes associated with the O···O···O bending and O···O stretching of molecules linked by hydrogen bonds. The analysis of the geometry of water clusters confined between two graphite surfaces has been performed using ab initio methods. The ab initio calculations yield two preferential orientations of water molecules which are; 1) one O-H bond points to the surface and the other is parallel; 2) both O-H bonds are parallel to the surface. These orientations agree with those found in our MD simulation results. The calculated energy barriers for proton transfer of the confined H3O-(H2O) complexes between two graphite model surfaces suggest that the confinement enhances the proton transfer at the separation 6-14.5 Å. When the confinement is high, at a separation of 4 Å, the barrier energies are extremely large. The confinement does not enhance proton transfer when the H3O-(H2O) complexes are located further from the surfaces by more than 8 Å. As a result, the barrier energies start to increase at the separation of 20 Å.

Dynamics of Water and Hydrated Protons in Confinement

Dynamics of Water and Hydrated Protons in Confinement PDF Author:
Publisher:
ISBN: 9789080170407
Category :
Languages : en
Pages : 154

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Book Description
"In this thesis the dynamics of water and hydrated protons in confinement has been studied using nonlinear spectroscopy methods, including IR pump-probe spectroscopy and vibrational sum frequency generation spectroscopy (VSFG spectroscopy). Using the IR pump-probe spectroscopy, we first investigated the structural and dynamical properties of the O-H vibrations of the proton hydration complexes in hydrated Nafion. We found a strong reorganization of the proton hydration structure following single-quantum excitation of a proton vibration with infrared pulses. While, the infrared induced proton transfer becomes less observable with the increase of hydration level due to the acceleration of the vibrational relaxation and the increasingly dominant influence of the heating effect that results from the vibrational relaxation. With same method, we also studied the vibrational relaxation of aqueous protons in hydrated water clusters formed in acetonitrile, the vibrational dynamics of the bending mode of hydrated protons in Nafion and the energy relaxation dynamics of the hydration complex of hydroxide. With VSFG spectroscopy, we investigated the vibrational response of the hydration shells of hydrophobic anions (triflate, ethanesulfonate, and butanesulfonate). The addition of these hydrophobic anions mainly leads to a frequency shift of the main VSFG band for solution in H2O, while to a strong amplitude increase for solution in D2O. The difference is associated with a strong isotope effect in the intra- and intermolecular mixing of the hydroxyl stretch vibrations of the water molecules contained in the hydration shells of the hydrophobic anions."--Samenvatting auteur.

Impact of Hydrophobicity and Confinement on the Structure and Dynamics of Water at Interfaces

Impact of Hydrophobicity and Confinement on the Structure and Dynamics of Water at Interfaces PDF Author: Frederik Maria Zysk
Publisher:
ISBN:
Category :
Languages : en
Pages : 0

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Master's Theses Directories

Master's Theses Directories PDF Author:
Publisher:
ISBN:
Category : Dissertations, Academic
Languages : en
Pages : 312

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Book Description
"Education, arts and social sciences, natural and technical sciences in the United States and Canada".

Hydrogen-bond Dynamics and Proton Transfer in Nanoconfinement

Hydrogen-bond Dynamics and Proton Transfer in Nanoconfinement PDF Author:
Publisher:
ISBN: 9789462597778
Category :
Languages : en
Pages : 124

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Book Description


High Resolution Imaging, Spectroscopy and Nuclear Quantum Effects of Interfacial Water

High Resolution Imaging, Spectroscopy and Nuclear Quantum Effects of Interfacial Water PDF Author: Jing Guo
Publisher: Springer
ISBN: 9811316635
Category : Science
Languages : en
Pages : 128

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Book Description
This thesis presents a series of experimental techniques based on scanning probe microscopy, which make it possible access the degree of freedom of protons both in real and energy space. These novel techniques and methods allow direct visualization of the concerted quantum tunneling of protons within the hydrogen-bonded network and quantification of the quantum component of a single hydrogen bond at a water–solid interface for the first time. Furthermore, the thesis demonstrates that the anharmonic quantum fluctuations of hydrogen nuclei further weaken the weak hydrogen bonds and strengthen the strong ones. However, this trend was reversed when the hydrogen bond coupled to the local environment. These pioneering findings substantially advance our understanding of the quantum nature of H bonds at the molecular level.

Structure and Dynamics of Confined Polymers

Structure and Dynamics of Confined Polymers PDF Author: John J. Kasianowicz
Publisher: Springer Science & Business Media
ISBN: 9781402006975
Category : Science
Languages : en
Pages : 46

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Book Description
Polymers are essential to biology because they can have enough stable degrees of freedom to store the molecular code of heredity and to express the sequences needed to manufacture new molecules. Through these they perform or control virtually every function in life. Although some biopolymers are created and spend their entire career in the relatively large free space inside cells or organelles, many biopolymers must migrate through a narrow passageway to get to their targeted destination. This suggests the questions: How does confining a polymer affect its behavior and function? What does that tell us about the interactions between the monomers that comprise the polymer and the molecules that confine it? Can we design and build devices that mimic the functions of these nanoscale systems? The NATO Advanced Research Workshop brought together for four days in Bikal, Hungary over forty experts in experimental and theoretical biophysics, molecular biology, biophysical chemistry, and biochemistry interested in these questions. Their papers collected in this book provide insight on biological processes involving confinement and form a basis for new biotechnological applications using polymers. In his paper Edmund DiMarzio asks: What is so special about polymers? Why are polymers so prevalent in living things? The chemist says the reason is that a protein made of N amino acids can have any of 20 different kinds at each position along the chain, resulting in 20 N different polymers, and that the complexity of life lies in this variety.

Ultrafast Infrared Vibrational Spectroscopy

Ultrafast Infrared Vibrational Spectroscopy PDF Author: Michael D. Fayer
Publisher: CRC Press
ISBN: 1466510137
Category : Science
Languages : en
Pages : 491

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Book Description
The advent of laser-based sources of ultrafast infrared pulses has extended the study of very fast molecular dynamics to the observation of processes manifested through their effects on the vibrations of molecules. In addition, non-linear infrared spectroscopic techniques make it possible to examine intra- and intermolecular interactions and how such interactions evolve on very fast time scales, but also in some instances on very slow time scales. Ultrafast Infrared Vibrational Spectroscopy is an advanced overview of the field of ultrafast infrared vibrational spectroscopy based on the scientific research of the leading figures in the field. The book discusses experimental and theoretical topics reflecting the latest accomplishments and understanding of ultrafast infrared vibrational spectroscopy. Each chapter provides background, details of methods, and explication of a topic of current research interest. Experimental and theoretical studies cover topics as diverse as the dynamics of water and the dynamics and structure of biological molecules. Methods covered include vibrational echo chemical exchange spectroscopy, IR-Raman spectroscopy, time resolved sum frequency generation, and 2D IR spectroscopy. Edited by a recognized leader in the field and with contributions from top researchers, including experimentalists and theoreticians, this book presents the latest research methods and results. It will serve as an excellent resource for those new to the field, experts in the field, and individuals who want to gain an understanding of particular methods and research topics.

Water in Biological and Chemical Processes

Water in Biological and Chemical Processes PDF Author: Biman Bagchi
Publisher: Cambridge University Press
ISBN: 1107037298
Category : Medical
Languages : en
Pages : 383

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Book Description
A unified overview of the dynamical properties of water and its unique and diverse role in biological and chemical processes.

Proton Exchange Membrane Fuel Cells

Proton Exchange Membrane Fuel Cells PDF Author: David P. Wilkinson
Publisher: CRC Press
ISBN: 1439806667
Category : Science
Languages : en
Pages : 462

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Book Description
A Detailed, Up-to-Date Treatment of Key Developments in PEMFC MaterialsThe potential to revolutionize the way we power our worldBecause of its lower temperature and special polymer electrolyte membrane, the proton exchange membrane fuel cell (PEMFC) is well-suited for transportation, portable, and micro fuel cell applications. But the performance o