Chinook Salmon Baseline Genetic Sampling Along the Alaska Peninsula and Adjacent Areas Results, 2012-2014 PDF Download
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Author: Mark J. Witteveen
Publisher:
ISBN:
Category : Chinook salmon
Languages : en
Pages : 20
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Book Description
Recent low runs of Chinook salmon Oncorhynchus tshawytscha in Alaska have resulted in an increased interest in developing a more comprehensive genetic baseline throughout the state. An updated genetic baseline will allow for additional spatial resolution when examination of potential impacts of fisheries on Chinook salmon stocks using mixed stock analysis. These sampling efforts resulted in surveys of 33 areas, 27 of which resulted in new Chinook salmon collections, with 15 of those with sufficient samples (>70 individuals) to add representation to the genetic baseline. This work increased the department's knowledge regarding the abundance and distribution of Chinook salmon on the Alaska Peninsula and Kodiak Island.
Author: Mark J. Witteveen
Publisher:
ISBN:
Category : Chinook salmon
Languages : en
Pages : 20
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Book Description
Recent low runs of Chinook salmon Oncorhynchus tshawytscha in Alaska have resulted in an increased interest in developing a more comprehensive genetic baseline throughout the state. An updated genetic baseline will allow for additional spatial resolution when examination of potential impacts of fisheries on Chinook salmon stocks using mixed stock analysis. These sampling efforts resulted in surveys of 33 areas, 27 of which resulted in new Chinook salmon collections, with 15 of those with sufficient samples (>70 individuals) to add representation to the genetic baseline. This work increased the department's knowledge regarding the abundance and distribution of Chinook salmon on the Alaska Peninsula and Kodiak Island.
Author: Mark J. Witteveen
Publisher:
ISBN:
Category : Chinook salmon
Languages : en
Pages : 13
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Book Description
Recent low runs of Chinook salmon Oncorhynchus tshawytscha in Alaska have resulted in an increased interest in developing a more comprehensive genetic baseline. A genetic baseline will allow for examination of potential impacts of fisheries on Chinook salmon stocks using mixed stock analysis. Potential hatchery contributions to fisheries will be determined using parental based tagging of Pillar Creek Hatchery Chinook salmon. There are several stocks in the Westward Region that do not have good representation in the genetic baseline, specifically on the north Alaska Peninsula and adjacent areas and near and on Kodiak Island. This document describes a plan to sample the Chinook salmon stocks in these areas to improve the genetic baseline.
Author: Charles. M. Guthrie
Publisher:
ISBN:
Category : Bycatches (Fisheries)
Languages : en
Pages : 33
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Book Description
A genetic analysis of samples from the Chinook salmon (Oncorhynchus tshawytscha) bycatch of the 2012 Bering Sea-Aleutian Island (BSAI) and Gulf of Alaska (GOA) trawl fisheries for walleye pollock (Gadus chalcogrammus) was undertaken to determine the stock composition of the sample set. Samples were genotyped for 43 single nucleotide polymorphism (SNP) DNA markers and results were estimated using the Alaska Department of Fish and Game (ADF&G) SNP baseline. In 2012, genetic samples from the Bering Sea were collected using a systematic random sampling protocol where one out of every 10 Chinook salmon encountered was sampled. Based on the analysis of 1,111 Chinook salmon bycatch samples collected throughout the 2012 BSAI walleye pollock trawl fishery, Coastal Western Alaska stocks dominated the sample set (63%) with smaller contributions from North Alaska Peninsula (11%), British Columbia (10%), and West Coast U.S. (OR/CA/WA) (7%) stocks.
Author: Charles. M. Guthrie
Publisher:
ISBN:
Category : Bycatches (Fisheries)
Languages : en
Pages : 31
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Book Description
A genetic analysis of samples from the Chinook salmon (Oncorhynchus tshawytscha) bycatch of the 2014 Gulf of Alaska (GOA) trawl fisheries for walleye pollock (Gadus chalcogrammus), rockfish (Sebastes spp.), and arrowtooth flounder (Atheresthes stomias) was undertaken to determine the stock composition of the sample sets. Samples were genotyped for 43 single nucleotide polymorphism (SNP) DNA markers and results were estimated using the Alaska Department of Fish and Game (ADF&G) SNP baseline. In 2014, genetic samples were collected from Chinook salmon taken in the bycatch of the Gulf of Alaska (GOA) pollock trawl fisheries using a simple random sample protocol with trip being the primary unit. This is the first year for this sampling protocol and resulted in the largest available genetic sample set to date with 10.7% of the salmon bycatch successfully genotyped. Based on the analysis of 1,163 Chinook salmon bycatch samples, British Columbia (43%), West Coast U.S. (35%), Coastal Southeast Alaska (16%), and Northwest Gulf of Alaska stocks (5%) comprised the largest stock groups. Weighting the available sample sets to the total bycatch by season and statistical area did not appreciably change the overall stock composition. In 2014, genetic samples from the bycatch of the rockfish catcher vessel (CV) fishery in the central GOA were collected by the fishing industry using a census sampling protocol where every Chinook salmon encountered was sampled. Based on the genotyping of 398 Chinook salmon bycatch samples collected from the 2014 GOA rockfish CV trawl fishery in NMFS Statistical Areas 620 and 630, West Coast U.S. stocks (WA/OR/CA) represented the largest stock grouping (72%) with smaller contributions from British Columbia (17%), Coastal Southeast Alaska (7%), and Northwest GOA (3%) stocks. Based on the genotyping of 404 Chinook salmon bycatch samples collected throughout the 2014 GOA arrowtooth flounder trawl fishery from the catcher-processors (CP) FV Vaerdal and FV US Intrepid; West Coast U.S. stocks (WA/OR/CA) represented the largest stock grouping (51%) with smaller contributions from British Columbia (36%), Coastal Southeast Alaska (10%), Northeast GOA (2%) and Northwest GOA (2%) stocks. [doi:10.7289/V5/TM-AFSC-311 (http://dx.doi.org/10.7289/V5/TM-AFSC-311)]
Author: Charles. M. Guthrie
Publisher:
ISBN:
Category : Bycatches (Fisheries)
Languages : en
Pages : 28
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Book Description
A genetic analysis of samples from the Chinook salmon (Oncorhynchus tshawytscha) bycatch of the 2011 Bering Sea-Aleutian Island (BSAI) and Gulf of Alaska (GOA) pollock trawl fisheries was undertaken to determine the stock composition of the sample set. Samples were genotyped for 43 single nucleotide polymorphism (SNP) DNA markers and results were estimated using the Alaska Department of Fish and Game (ADF&G) SNP baseline. In 2011, genetic samples from the Bering Sea were collected using a systematic random sampling protocol from one out of every 10 Chinook salmon encountered. Based on the analysis of 2,473 Chinook salmon bycatch samples collected throughout the 2011 BSAI walleye pollock (Theragra chalcogramma) trawl fishery, Coastal Western Alaska stocks dominated the sample set (68%) with smaller contributions from North Alaska Peninsula (9%), British Columbia (8%), and U.S. west coast (6%) stocks. Analysis of temporal groupings within the pollock "A" and "B" seasons revealed changes in stock composition during the course of the year with lower contributions of North Alaska Peninsula and Yukon River stocks during the "B" season. Genetic samples were also collected from Chinook salmon taken in the bycatch of the 2011 Gulf of Alaska (GOA) pollock trawl fisheries. In contrast with the Bering Sea, genetic samples were collected opportunistically in the GOA during 2011; consequently, the resulting stock composition estimates should be considered as stock compositions of the sample set rather than a representative composition of the entire GOA Chinook salmon bycatch. Based on the analysis of 240 Chinook salmon bycatch samples, British Columbia (40%) and U.S. west coast (26%) stocks comprised the largest stock groups with smaller contributions from Northwest GOA (15%) and Coastal Southeast Alaska (14%) stocks.
Author: Charles. M. Guthrie
Publisher:
ISBN:
Category : Bycatches (Fisheries)
Languages : en
Pages : 25
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Book Description
A genetic analysis of samples from the Chinook salmon (Oncorhynchus tshawytscha) bycatch of the 2014 Bering Sea-Aleutian Island (BSAI) trawl fishery for walleye pollock (Gadus chalcogrammus) was undertaken to determine the overall stock composition of the bycatch. Samples were genotyped for 43 single nucleotide polymorphism (SNP) DNA markers and results were estimated using the Alaska Department of Fish and Game (ADF&G) SNP baseline. In 2014, genetic samples from the Bering Sea were collected using a systematic random sampling protocol where one out of every 10 Chinook salmon encountered was sampled. Based on the analysis of 1,385 Chinook salmon bycatch samples collected throughout the 2014 BSAI walleye pollock trawl fishery, Coastal Western Alaska stocks dominated the sample set (49%) with smaller contributions from North Alaska Peninsula (18%), British Columbia (14%), and West Coast U.S. (WA/OR/CA) (7%) stocks. Analysis of temporal groupings within the pollock "A" and "B" seasons revealed changes in stock composition during the course of the year with lower contributions of Coastal Western Alaska, North Alaska Peninsula and Yukon stocks and higher contributions of West Coast U.S. (WA/OR/CA), British Columbia, NW Gulf of Alaska and Coastal Southeast Alaska stocks during the "B" season. [doi:10.7289/V5/TM-AFSC-310 (http://dx.doi.org/10.7289/V5/TM-AFSC-310)]
Author: Jeffrey Robert Guyon
Publisher:
ISBN:
Category : Bycatch excluder devices
Languages : en
Pages : 19
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Book Description
A genetic analysis of samples from the Chinook salmon (Oncorhynchus t shawytscha) bycatch of the 2013 Gulf of Alaska (GOA) trawl fisheries for Pacific rockfish (Sebastes spp.) and arrowtooth (Atheresthes stomias) flounder was undertaken to determine the stock composition of the sample sets. Samples were genotyped for 43 single nucleotide polymorphism (SNP) DNA markers and results were estimated using the Alaska Department of Fish and Game (ADF&G) SNP baseline. In 2013, genetic samples from the bycatch of the GOA rockfish fishery were collected by the fishing industry using a census sampling protocol where every Chinook salmon encountered was sampled. Based on the analysis of 2,029 Chinook salmon bycatch samples collected throughout the 2013 GOA rockfish trawl fishery, West Coast U.S. stocks (WA/OR/CA) represented the larges t stock grouping (60%) with smaller contributions from British Columbia (31%), Coastal Southeast Alaska (6%), and Northwest GOA (2%) stocks. Genetic samples were also collected from Chinook salmon taken in the bycatch of the 2013 GOA arrowtooth flounder tr awl fisheries. Those samples were collected opportunistically from a single vessel; consequently, the resulting stock composition estimates should be considered as stock compositions of the sample set rather than a representative composition of the overall bycatch. Based on the analysis of 279 Chinook salmon bycatch samples, West Coast U.S. (43%), British Columbia (39%), Coastal Southeast Alaska 14%), and Northwest GOA (3%) stocks comprised the largest stock groups. We also produced a stock composition estimate of Chinook salmon from a single test haul of the salmon excluder device performed in April 2013 in an area near Kodiak Island in Shelikof Strait. Stock composition results showed that the majority of those 95 Chinook salmon originated from West Coast U.S. (79%), British Columbia (17%), and Coastal Southeast Alaska (3%) stocks.
Author: Charles. M. Guthrie
Publisher:
ISBN:
Category : Bycatches (Fisheries)
Languages : en
Pages : 33
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Book Description
A genetic analysis of samples from the Chinook salmon (Oncorhynchus tshawytscha) bycatch of the 2015 Gulf of Alaska (GOA) trawl fisheries for walleye pollock (Gadus chalcogrammus), rockfish (Sebastes spp.), and arrowtooth flounder (Atheresthes stomias) was undertaken to determine the stock composition of the sample sets. Samples were genotyped for 43 single nucleotide polymorphism (SNP) DNA markers and results were estimated using the Alaska Department of Fish and Game (ADF&G) SNP baseline. In 2015, genetic samples were collected from Chinook salmon taken in the bycatch of the Gulf of Alaska (GOA) pollock trawl fisheries using a simple random sample protocol with trip being the primary unit. This is the second year for this sampling protocol and resulted in the largest available genetic sample set to date with 17.8% of the salmon bycatch successfully genotyped. Based on the analysis of 2,414 Chinook salmon bycatch samples, British Columbia (51%), West Coast U.S. (32%), Coastal Southeast Alaska (14%), and Northwest Gulf of Alaska stocks (3%) comprised the largest stock groups. In 2015, genetic samples from the bycatch of the GOA rockfish catcher vessel (CV) fishery were collected by the fishing industry using a census sampling protocol where every Chinook salmon encountered was sampled. Based on the genotyping of 635 Chinook salmon bycatch samples collected from the 2015 GOA rockfish CV trawl fishery in NMFS Statistical Areas 620 and 630, West Coast U.S. stocks (WA/OR/CA) represented the largest stock grouping (73%) with smaller contributions from British Columbia (19%), Coastal Southeast Alaska (5%), and Northwest GOA (3%) stocks. Based on the genotyping of 300 Chinook salmon bycatch samples collected throughout the 2015 GOA arrowtooth flounder trawl fishery from the catcher processors (CP), West Coast U.S. stocks (WA/OR/CA) represented the largest stock grouping. [doi:10.7289/V5/TM-AFSC-343 (http://dx.doi.org/10.7289/V5/TM-AFSC-343)]
Author: Charles. M. Guthrie
Publisher:
ISBN:
Category : Bycatches (Fisheries)
Languages : en
Pages : 32
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Book Description
A genetic analysis of samples from the Chinook salmon (Oncorhynchus tshawytscha) Prohibited Species Catch (bycatch) of the 2016 Gulf of Alaska (GOA) trawl fisheries for walleye pollock (Gadus chalcogrammus) and rockfish (Sebastes spp.), was undertaken to determine the stock composition of the sample sets. Samples were genotyped for 43 single nucleotide polymorphism (SNP) DNA markers and results were estimated using the Alaska Department of Fish and Game SNP baseline. In 2016, genetic samples were collected from Chinook salmon taken in the bycatch of the GOA pollock trawl fisheries using a simple random sample protocol with trip being the primary unit. This was the third year for this sampling protocol and which resulted in the largest available genetic sample set to date with 24% of the estimated salmon bycatch from the pollock fishery successfully genotyped. Based on analysis of 4,962 Chinook salmon bycatch samples, British Columbia (42%), West Coast US (40%), and Coastal Southeast Alaska (15%) comprised the largest stock groups, at an estimated 8,602, 8,301, and 3,080 Chinook salmon, respectively, out of 20,589 fish total. In 2016, genetic samples from the bycatch of the GOA rockfish CV fishery were collected by the fishing industry using a census sampling protocol. Based on the genotyping of 493 Chinook salmon bycatch samples collected from this fishery in NMFS Statistical Areas 620 and 630, West Coast US stocks represented the largest stock group (62%) with smaller contributions from British Columbia (27%), Coastal Southeast Alaska (7%), and Northwest GOA (4%) stock groups.
Author: Lisa Wishard Seeb
Publisher:
ISBN:
Category : Chinook salmon
Languages : en
Pages : 11
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Book Description
This report serves as a first-year summary of progress of a contract study intended to document the timing and origins of chinook salmon, Oncorhynchus tshawytscha, stocks in the Copper River and adjacent ocean fisheries using DNA markers. The project is intended to investigate the genetic structure of chinook salmon from the Copper River drainage using both microsatellite and single nucleotide polymorphisms (SNPs). Identification of genetic stocks of chinook salmon within the Copper River drainage and knowledge of their run timing and migration patterns will provide valuable information to optimize management and provide for sustainable fisheries. The first objective of this contract study is to develop a DNA database to delineate major geographic and temporal stocks of chinook salmon within the Copper River. This objective requires collection of tissue samples as well as the laboratory DNA analyses of those tissues. A second objective is to investigate run timing and entry patterns within the Copper River through the analysis of radio-tagged and fishwheel samples from Baird Canyon. A third objective is to characterize the timing of Copper River stocks in the ocean fisheries and estimate the contribution to this fishery by stocks of non-Copper River origin. Finally, these data will be standardized and contributed to a coastwide DNA database so that Copper River chinook salmon can be tracked throughout their marine migration. This report reviews the first year of the study which concentrated on objective 1.
