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Author: Kavi Kishor P.B.
Publisher: Springer
ISBN: 8132218809
Category : Science
Languages : en
Pages : 296
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Book Description
A common approach to understanding the functional repertoire of a genome is through functional genomics. With systems biology burgeoning, bioinformatics has grown to a larger extent for plant genomes where several applications in the form of protein-protein interactions (PPI) are used to predict the function of proteins. With plant genes evolutionarily conserved, the science of bioinformatics in agriculture has caught interest with myriad of applications taken from bench side to in silico studies. A multitude of technologies in the form of gene analysis, biochemical pathways and molecular techniques have been exploited to an extent that they consume less time and have been cost-effective to use. As genomes are being sequenced, there is an increased amount of expression data being generated from time to time matching the need to link the expression profiles and phenotypic variation to the underlying genomic variation. This would allow us to identify candidate genes and understand the molecular basis/phenotypic variation of traits. While many bioinformatics methods like expression and whole genome sequence data of organisms in biological databases have been used in plants, we felt a common reference showcasing the reviews for such analysis is wanting. We envisage that this dearth would be facilitated in the form of this Springer book on Agricultural Bioinformatics. We thank all the authors and the publishers Springer, Germany for providing us an opportunity to review the bioinformatics works that the authors have carried in the recent past and hope the readers would find this book attention grabbing.
Author: Kavi Kishor P.B.
Publisher: Springer
ISBN: 8132218809
Category : Science
Languages : en
Pages : 296
Get Book Here
Book Description
A common approach to understanding the functional repertoire of a genome is through functional genomics. With systems biology burgeoning, bioinformatics has grown to a larger extent for plant genomes where several applications in the form of protein-protein interactions (PPI) are used to predict the function of proteins. With plant genes evolutionarily conserved, the science of bioinformatics in agriculture has caught interest with myriad of applications taken from bench side to in silico studies. A multitude of technologies in the form of gene analysis, biochemical pathways and molecular techniques have been exploited to an extent that they consume less time and have been cost-effective to use. As genomes are being sequenced, there is an increased amount of expression data being generated from time to time matching the need to link the expression profiles and phenotypic variation to the underlying genomic variation. This would allow us to identify candidate genes and understand the molecular basis/phenotypic variation of traits. While many bioinformatics methods like expression and whole genome sequence data of organisms in biological databases have been used in plants, we felt a common reference showcasing the reviews for such analysis is wanting. We envisage that this dearth would be facilitated in the form of this Springer book on Agricultural Bioinformatics. We thank all the authors and the publishers Springer, Germany for providing us an opportunity to review the bioinformatics works that the authors have carried in the recent past and hope the readers would find this book attention grabbing.
Author: Pradeep Sharma
Publisher: Academic Press
ISBN: 0323885993
Category : Technology & Engineering
Languages : en
Pages : 707
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Book Description
Bioinformatics in Agriculture: Next Generation Sequencing Era is a comprehensive volume presenting an integrated research and development approach to the practical application of genomics to improve agricultural crops. Exploring both the theoretical and applied aspects of computational biology, and focusing on the innovation processes, the book highlights the increased productivity of a translational approach. Presented in four sections and including insights from experts from around the world, the book includes: Section I: Bioinformatics and Next Generation Sequencing Technologies; Section II: Omics Application; Section III: Data mining and Markers Discovery; Section IV: Artificial Intelligence and Agribots. Bioinformatics in Agriculture: Next Generation Sequencing Era explores deep sequencing, NGS, genomic, transcriptome analysis and multiplexing, highlighting practices forreducing time, cost, and effort for the analysis of gene as they are pooled, and sequenced. Readers will gain real-world information on computational biology, genomics, applied data mining, machine learning, and artificial intelligence. This book serves as a complete package for advanced undergraduate students, researchers, and scientists with an interest in bioinformatics. - Discusses integral aspects of molecular biology and pivotal tool sfor molecular breeding - Enables breeders to design cost-effective and efficient breeding strategies - Provides examples ofinnovative genome-wide marker (SSR, SNP) discovery - Explores both the theoretical and practical aspects of computational biology with focus on innovation processes - Covers recent trends of bioinformatics and different tools and techniques
Author: Atul Kumar Upadhyay
Publisher: Springer Nature
ISBN: 9813347910
Category : Science
Languages : en
Pages : 160
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Book Description
This book illustrates the importance and significance of bioinformatics in the field of agriculture. It first introduces the basic concepts of bioinformatics, such as homologous sequence and gene function analyses, determination of protein structures, and discusses machine learning applications for an in-depth understanding of the desired genes and proteins based on commonly used bioinformatics software and tools, e.g. BLAST, molecular modelling, molecular-docking and simulations, protein-protein and domain-domain interactions. The book also describes recent advances in the high-throughput analysis of whole genome and transcriptome using next-generation sequencing platforms, and functional proteome studies. It also examines the role of computational biology in understanding and improving the nutrient quality and yield of crops. Lastly, the book explores a comprehensive list of applications of bioinformatics to improve plant yield, biomass, and health, and the challenges involved.
Author: Basant K. Tiwary
Publisher: Springer Nature
ISBN: 9811642419
Category : Medical
Languages : en
Pages : 239
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Book Description
This textbook introduces fundamental concepts of bioinformatics and computational biology to the students and researchers in biology, medicine, veterinary science, agriculture, and bioengineering . The respective chapters provide detailed information on biological databases, sequence alignment, molecular evolution, next-generation sequencing, systems biology, and statistical computing using R. The book also presents a case-based discussion on clinical, veterinary, agricultural bioinformatics, and computational bioengineering for application-based learning in the respective fields. Further, it offers readers guidance on reconstructing and analysing biological networks and highlights computational methods used in systems medicine and genome-wide association mapping of diseases. Given its scope, this textbook offers an essential introductory book on bioinformatics and computational biology for undergraduate and graduate students in the life sciences, botany, zoology, physiology, biotechnology, bioinformatics, and genomic science as well as systems biology, bioengineering and the agricultural, and veterinary sciences.
Author: R Keshavachandran
Publisher: New India Publishing Agency- Nipa
ISBN: 9788196079031
Category :
Languages : en
Pages : 0
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Book Description
Biotechnological tools supplement various conventional approaches in conservation, characterization and utilization for increasing production and productivity of agricultural and horticultural crops. The emerging field of bioinformatics is an integrated field arising from merging of biology and informatics. It is a conglomeration of various new frontiers of science like genomics, proteomics, metabolomics etc. The rich warehouse of proteome and genome information nearly doubling every year has significant implications and applications in various areas of science including agriculture, horticulture, forestry and food science. Cheminformatics is specialized to a range of problems in the field of chemistry. Chemical pesticide reduction is possible by adopting cheminformatics methods to identify naturally occurring chemical compounds in crops which act against pests. Bioinformatics has transformed the discipline of life science from a purely lab based science to an information science as well. The ICAR has recently launched a National Agricultural Bioinformatics Grid (NABG) to serve as a computational facility in developing national biodatabases and data warehouses. The present book Agriculture Bioinformatics is a compilation of 17 information packed chapters authored by working scientists in the respective discipline. In addition to the theoretical information, practical and applied aspects to boost productivity and quality of crops are given.
Author: Manoj Kumar Gupta
Publisher: Springer Nature
ISBN: 9811639930
Category : Science
Languages : en
Pages : 609
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Book Description
This book provides an up-to-date review of classic and advanced bioinformatics approaches and their utility in rice research. It summarizes databases and tools for analyzing DNA, proteins and gene expression profiles, mapping genetic variations, annotation of protein and RNA molecules, phylogenetic analysis, and pathway enrichment. In addition, it presents high-throughput technologies that are widely used to provide deep insights into the genetic architecture of important traits in the rice genome. The book subsequently discusses techniques for identifying RNA-protein, DNA-protein interactions, and molecular markers, including SNP and microsatellites, in the contexts of rice breeding and genetics. Lastly, it explores various tools that are used to identify and characterize non-coding RNA in rice and their potential role in rice research.
Author: Dhananjaya Pratap Singh
Publisher: Springer
ISBN: 813222647X
Category : Science
Languages : en
Pages : 354
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Book Description
How to achieve sustainable agricultural production without compromising environmental quality, agro-ecosystem function and biodiversity is a serious consideration in current agricultural practices. Farming systems’ growing dependency on chemical inputs (fertilizers, pesticides, nutrients etc.) poses serious threats with regard to crop productivity, soil fertility, the nutritional value of farm produce, management of pests and diseases, agro-ecosystem well-being, and health issues for humans and animals. At the same time, microbial inoculants in the form of biofertilizers, plant growth promoters, biopesticides, soil health managers, etc. have gained considerable attention among researchers, agriculturists, farmers and policy makers. The first volume of the book Microbial Inoculants in Sustainable Agricultural Productivity - Research Perspectives highlights the efforts of global experts with regard to various aspects of microbial inoculants. Emphasis is placed on recent advances in microbiological techniques for the isolation, characterization, identification and evaluation of functional properties using biochemical and molecular tools. The taxonomic characterization of agriculturally important microorganisms is documented, along with their applications in field conditions. The book exploresthe identification, characterization and diversity analysis of endophytic microorganisms in various crops including legumes/ non-legumes, as well as the assessment of their beneficial impacts in the context of promotingplant growth. Moreover, it provides essential updates onthe diversity and role of plant growth promoting rhizobacteria (PGPR) and arbuscular mycorrhizal mycorrhizal fungi (AMF). Further chaptersexamine in detailbiopesticides, thehigh-density cultivation of bioinoculants in submerged culture, seed biopriming strategies for abiotic and biotic stress tolerance, andPGPR as abio-control agent. Given its content,the book offers a valuable resource for researchers involved in research and development concerningPGPR, biopesticides and microbial inoculants.
Author: Chandra Sekhar Mukhopadhyay
Publisher: John Wiley & Sons
ISBN: 1119244412
Category : Medical
Languages : en
Pages : 554
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Book Description
An accessible guide that introduces students in all areas of life sciences to bioinformatics Basic Applied Bioinformatics provides a practical guidance in bioinformatics and helps students to optimize parameters for data analysis and then to draw accurate conclusions from the results. In addition to parameter optimization, the text will also familiarize students with relevant terminology. Basic Applied Bioinformatics is written as an accessible guide for graduate students studying bioinformatics, biotechnology, and other related sub-disciplines of the life sciences. This accessible text outlines the basics of bioinformatics, including pertinent information such as downloading molecular sequences (nucleotide and protein) from databases; BLAST analyses; primer designing and its quality checking, multiple sequence alignment (global and local using freely available software); phylogenetic tree construction (using UPGMA, NJ, MP, ME, FM algorithm and MEGA7 suite), prediction of protein structures and genome annotation, RNASeq data analyses and identification of differentially expressed genes and similar advanced bioinformatics analyses. The authors Chandra Sekhar Mukhopadhyay, Ratan Kumar Choudhary, and Mir Asif Iquebal are noted experts in the field and have come together to provide an updated information on bioinformatics. Salient features of this book includes: Accessible and updated information on bioinformatics tools A practical step-by-step approach to molecular-data analyses Information pertinent to study a variety of disciplines including biotechnology, zoology, bioinformatics and other related fields Worked examples, glossary terms, problems and solutions Basic Applied Bioinformatics gives students studying bioinformatics, agricultural biotechnology, animal biotechnology, medical biotechnology, microbial biotechnology, and zoology an updated introduction to the growing field of bioinformatics.
Author: Khalid Rehman Hakeem
Publisher: Springer Nature
ISBN: 3030193187
Category : Science
Languages : en
Pages : 228
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Book Description
Bioinformatics is an integrative field of computer science, genetics, genomics, proteomics, and statistics, which has undoubtedly revolutionized the study of biology and medicine in past decades. It mainly assists in modeling, predicting and interpreting large multidimensional biological data by utilizing advanced computational methods. Despite its enormous potential, bioinformatics is not widely integrated into the academic curriculum as most life science students and researchers are still not equipped with the necessary knowledge to take advantage of this powerful tool. Hence, the primary purpose of our book is to supplement this unmet need by providing an easily accessible platform for students and researchers starting their career in life sciences. This book aims to avoid sophisticated computational algorithms and programming. Instead, it will mostly focus on simple DIY analysis and interpretation of biological data with personal computers. Our belief is that once the beginners acquire these basic skillsets, they will be able to handle most of the bioinformatics tools for their research work and to better understand their experimental outcomes. The third volume is titled In Silico Life Sciences: Agriculture. It focuses on plant genetic, genomic, transcriptomic, proteomic and metabolomics data. Using examples of new crop diseases-emergence, crop productivity and biotic/abiotic stress tolerance, this book illustrates how bioinformatics can be an integral components of modern day plant science research.
Author: Charles Oluwaseun Adetunji
Publisher: John Wiley & Sons
ISBN: 139421149X
Category : Technology & Engineering
Languages : en
Pages : 596
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Book Description
This book details recent advances in the applications of nanobiofertilizers as a substitute for synthetic fertilizers in boosting food production. With the steady rise of the world’s population, there is a need to increase the production of safe and nutritious food. The constant loss of arable land, as a result of various anthropogenic activities from human action, has become a threat to global biodiversity and ecosystems. Additionally, the issue of climate change has imposed many obstacles to increasing agricultural productivity, especially from biotic and abiotic stressors and temperature-limited environments, such as in high altitudes or seasonally hot regions. Because of these factors, there is a need to adopt sustainable and modern technologies that can boost and improve the rate of food production. One of the cheapest means of enhancing sustainable food production is to explore natural and unlimited beneficial microorganisms, particularly those that can increase the level of soil fertility, improve crop production and health, improve tolerance to stress, support nutrient uptake and availability, and boost natural biodiversity. The synergetic effect of nanotechnology and beneficial microorganisms for the effective bio-fabrication of nanobiofertilizers, is a sustainable solution for producing pesticide-free food. This book provides a deep insight into microbial diversity, recent techniques used for the isolation, screening, and characterization of beneficial microorganisms with eco-friendly attributes, used for bioengineering of nanobiofertilizers, as well as the application of proteomics, metabolomics, genomics, and bioinformatics. The book also covers commercialization, patents, and the business and socio-economic aspects of nanobiofertilizers, as well as the role of policymakers, stakeholders, and government agencies in the translation of nanobioferilizer research into policy. Audience The book is a useful resource for a diverse audience, including industrialists, food industry professionals, agriculturists, agricultural microbiologists, plant pathologists, botanists, microbiologists, biotechnologists, nanotechnologists, microbial biotechnologists, farmers, policymakers, and extension workers.
