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Author: Kevin Joseph Emmett
Publisher:
ISBN:
Category :
Languages : en
Pages :
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Book Description
Network approaches are used to represent the population of S. aureus and analyze the spread of antibiotic resistance genes. The presence of antibiotic resistance genes in the human microbiome is investigated.
Author: Kevin Joseph Emmett
Publisher:
ISBN:
Category :
Languages : en
Pages :
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Book Description
Network approaches are used to represent the population of S. aureus and analyze the spread of antibiotic resistance genes. The presence of antibiotic resistance genes in the human microbiome is investigated.
Author: Nathalie Gontier
Publisher: Springer
ISBN: 3319163450
Category : Science
Languages : en
Pages : 345
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Book Description
Written for non-experts, this volume introduces the mechanisms that underlie reticulate evolution. Chapters are either accompanied with glossaries that explain new terminology or timelines that position pioneering scholars and their major discoveries in their historical contexts. The contributing authors outline the history and original context of discovery of symbiosis, symbiogenesis, lateral gene transfer, hybridization or divergence with gene flow and infectious heredity. By applying key insights from the areas of molecular (phylo)genetics, microbiology, virology, ecology, systematics, immunology, epidemiology and computational science, they demonstrate how reticulate evolution impacts successful survival, fitness and speciation. Reticulate evolution brings forth a challenge to the standard Neo-Darwinian framework, which defines life as the outcome of bifurcation and ramification patterns brought forth by the vertical mechanism of natural selection. Reticulate evolution puts forward a pattern in the tree of life that is characterized by horizontal mergings and lineage crossings induced by symbiosis, symbiogenesis, lateral gene transfer, hybridization or divergence with gene flow and infective heredity, making the “tree of life” look more like a “web of life.” On an epistemological level, the various means by which hereditary material can be transferred horizontally challenges our classic notions of units and levels of evolution, fitness, modes of transmission, linearity, communities and biological individuality. The case studies presented examine topics including the origin of the eukaryotic cell and its organelles through symbiogenesis; the origin of algae through primary and secondary symbiosis and dinoflagellates through tertiary symbiosis; the superorganism and holobiont as units of evolution; how endosymbiosis induces speciation in multicellular life forms; transferrable and non-transferrable plasmids and how they symbiotically interact with their host; the means by which pro- and eukaryotic organisms transfer genes laterally (bacterial transformation, transduction and conjugation as well as transposons and other mobile genetic elements); hybridization and divergence with gene flow in sexually-reproducing individuals; current (human) microbiome and viriome studies that impact our knowledge concerning the evolution of organismal health and acquired immunity; and how symbiosis and symbiogenesis can be modelled in computational evolution.
Author: Raul Rabadan
Publisher: Cambridge University Press
ISBN: 1108757499
Category : Science
Languages : en
Pages : 522
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Book Description
Biology has entered the age of Big Data. A technical revolution has transformed the field, and extracting meaningful information from large biological data sets is now a central methodological challenge. Algebraic topology is a well-established branch of pure mathematics that studies qualitative descriptors of the shape of geometric objects. It aims to reduce comparisons of shape to a comparison of algebraic invariants, such as numbers, which are typically easier to work with. Topological data analysis is a rapidly developing subfield that leverages the tools of algebraic topology to provide robust multiscale analysis of data sets. This book introduces the central ideas and techniques of topological data analysis and its specific applications to biology, including the evolution of viruses, bacteria and humans, genomics of cancer, and single cell characterization of developmental processes. Bridging two disciplines, the book is for researchers and graduate students in genomics and evolutionary biology as well as mathematicians interested in applied topology.
Author: Mihaela Baroni
Publisher:
ISBN:
Category : Hybridization
Languages : en
Pages : 19
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Book Description
Author: David R. Hunt
Publisher:
ISBN:
Category : Cactus
Languages : en
Pages : 260
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Book Description
Author: Michael L. Arnold
Publisher: Oxford University Press
ISBN: 0199539588
Category : Language Arts & Disciplines
Languages : en
Pages : 246
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Book Description
This book describes the important role that the transfer of genes between organisms has played during the origin and evolution of humans, and the evolution of organisms on which the human species depends for shelter, sustenance and companionship.
Author: Kenneth B. Cumming
Publisher:
ISBN:
Category : Birds
Languages : en
Pages :
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Book Description
Author: Daniel H. Huson
Publisher: Cambridge University Press
ISBN: 9780521755962
Category : Science
Languages : en
Pages : 376
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Book Description
The evolutionary history of species is traditionally represented using a rooted phylogenetic tree. However, when reticulate events such as hybridization, horizontal gene transfer or recombination are believed to be involved, phylogenetic networks that can accommodate non-treelike evolution have an important role to play. This book provides the first interdisciplinary overview of phylogenetic networks. Beginning with a concise introduction to both phylogenetic trees and phylogenetic networks, the fundamental concepts and results are then presented for both rooted and unrooted phylogenetic networks. Current approaches and algorithms available for computing phylogenetic networks from different types of datasets are then discussed, accompanied by examples of their application to real biological datasets. The book also summarises the algorithms used for drawing phylogenetic networks, along with the existing software for their computation and evaluation. All datasets, examples and other additional information and links are available from the book's companion website at www.phylogenetic-networks.org.
Author: Borislav G. Dimitrov
Publisher: Borislav Dimitrov
ISBN: 1370071213
Category : Philosophy
Languages : en
Pages : 520
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Book Description
The aim of this book is to critically examine whether it is methodologically possible to combine mathematical rigor – topology with a systematic dialectical methodology in Hegel, and if so, to provide as result of my interpretation the outline of Hegel’s Analysis Situs, also with the proposed models (build on the topological manifold, cobordism, topological data analysis, persistent homology, simplicial complexes and graph theory, to provide an indication of how the merger of Hegel’s dialectical logic and topology may be instrumental to a systematic logician and of how a systematic dialectical logic perspective may help mathematical model builders.
Author: James E. Eckenwalder
Publisher: Timber Press
ISBN: 0881929743
Category : Science
Languages : en
Pages : 745
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Book Description
Researched for more than three decades, this definitive work provides up-to-date descriptions of all the true conifers of the world, including 545 species of trees and shrubs. Written for accessibility to both horticultural and botanical audiences, it is the first comprehensive update of conifer taxonomy in nearly a century. Noted conifer taxonomist James E. Eckenwalder also discusses the relationships among the groups, practical usages, champion trees, fossil occurrences, and biology. New identification guides for the families and genera are based whenever possible on foliage features and thus should be easier to use than traditional conifer keys, which focus on seasonal, and often microscopic, cone characters. Eckenwalder shares the reasoning behind his taxonomic decisions, many of which are unique to this book, reflecting a comprehensive reevaluation of conifer classification. He also outlines the features sought in cultivars of each genus, particular cultivation concerns, and conifers recommended for cultivation under various conditions and to achieve different effects. Some 3,000 cultivars have been available in recent times, more than five times the total number of conifer species. Several hundred original illustrations include drawings of the seed cones for all genera as well as for representative species. Maps of the natural distribution of each genus allow for easy comparison of ranges. Handsome black-and-white photographs of species in their natural habitats and attractive color photos further enrich the volume. More than 100 images reproduce foliage of many genera as an aid in identification. With its unprecedented attention to detail and extensive bibliography, this major work is an essential reference for botanists, naturalists, and horticulturists.
