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Author: Amanda R. De La Torre
Publisher: Springer Nature
ISBN: 3030933903
Category : Science
Languages : en
Pages : 269
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Book Description
This book is the first comprehensive compilation of the most up-to-date research in the genomics, transcriptomics, and breeding of pine species across Europe, North America, and Australia. With chapters on the state of the reference genomes, transposon function, genome-wide diversity, functional genomics, genomics of disease resistance, genomics of abiotic stress, and genomic selection, this book is a must-read for scientists, breeders, and students of plant genomics. The book contains 12 chapters over 300 pages authored by a group of world-renowned scientists in the field of pine genomics. Pines (Pinus) are the world’s most economically important forest tree species. The recent genome sequencing of several important pine species has paved the way for understanding their complex biology and helps future management and breeding efforts.
Author: Amanda R. De La Torre
Publisher: Springer Nature
ISBN: 3030933903
Category : Science
Languages : en
Pages : 269
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Book Description
This book is the first comprehensive compilation of the most up-to-date research in the genomics, transcriptomics, and breeding of pine species across Europe, North America, and Australia. With chapters on the state of the reference genomes, transposon function, genome-wide diversity, functional genomics, genomics of disease resistance, genomics of abiotic stress, and genomic selection, this book is a must-read for scientists, breeders, and students of plant genomics. The book contains 12 chapters over 300 pages authored by a group of world-renowned scientists in the field of pine genomics. Pines (Pinus) are the world’s most economically important forest tree species. The recent genome sequencing of several important pine species has paved the way for understanding their complex biology and helps future management and breeding efforts.
Author: David B. Neale
Publisher: Springer
ISBN: 3319468073
Category : Science
Languages : en
Pages : 590
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Book Description
This book is the first comprehensive volume on conifers detailing their genomes, variations, and evolution. The book begins with general information about conifers such as taxonomy, geography, reproduction, life history, and social and economic importance. Then topics discussed include the full genome sequence, complex traits, phenotypic and genetic variations, landscape genomics, and forest health and conservation. This book also synthesizes the research included to provide a bigger picture and suggest an evolutionary trajectory. As a large plant family, conifers are an important part of economic botany. The group includes the pines, spruces, firs, larches, yews, junipers, cedars, cypresses, and sequoias. Of the phylum Coniferophyta, conifers typically bear cones and evergreen leaves. Recently, there has been much data available in conifer genomics with the publication of several crop and non-crop genome sequences. In addition to their economic importance, conifers are an important habitat for humans and animals, especially in developing parts of the world. The application of genomics for improving the productivity of conifer crops holds great promise to help provide resources for the most needy in the world.
Author: Oldenburg Oldenburg Press
Publisher:
ISBN: 9781523764426
Category :
Languages : en
Pages : 40
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Book Description
HiC-Pro is an optimized and flexible pipeline for processing Hi-C data from raw reads to normalized contact maps. HiC-Pro maps reads, detects valid ligation products, performs quality controls and generates intra- and inter-chromosomal contact maps. It includes a fast implementation of the iterative correction method and is based on a memory-efficient data format for Hi-C contact maps. In addition, HiC-Pro can use phased genotype data to build allele-specific contact maps. We applied HiC-Pro to different Hi-C datasets, demonstrating its ability to easily process large data in a reasonable time. Source code and documentation are available at http://github.com/nservant/HiC-Pro.
Author: Christophe Plomion
Publisher: CRC Press
ISBN: 1439876495
Category : Science
Languages : en
Pages : 476
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Book Description
With contributions by internationally reputed researchers in the field, this book presents the implications of the genomic revolution for conifers-promoting a better understanding of the evolution of these organisms as well as new knowledge about the molecular basis of quantitative trait variation. Both of these discoveries play important roles in
Author: Nicholas C. Carpita
Publisher: Springer
ISBN: 9401006687
Category : Science
Languages : en
Pages : 333
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Book Description
This work is a comprehensive collection of articles that cover aspects of cell wall research in the genomic era. Some 2500 genes are involved in some way in wall biogenesis and turnover, from generation of substrates, to polysaccharide and lignin synthesis, assembly, and rearrangement in the wall. Although a great number of genes and gene families remain to be characterized, this issue provides a census of the genes that have been discovered so far. The articles comprising this issue not only illustrate the enormous progress made in identifying the wealth of wall-related genes but they also show the future directions and how far we have to go. As cell walls are an enormously important source of raw material, we anticipate that cell-wall-related genes are of significant economic importance. Examples include the modification of pectin-cross-linking or cell-cell adhesion to increase shelf life of fruits and vegetables, the enhancement of dietary fiber contents of cereals, the improvement of yield and quality of fibers, and the relative allocation of carbon to wall biomass for use as biofuels. The book is intended for academic and professional scientists working in the area of plant biology as well as material chemists and engineers, and food scientists who define new ways to use cell walls.
Author: Supaphan Thummasuwan
Publisher:
ISBN:
Category : Baldcypress
Languages : en
Pages :
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Book Description
My research is focused on advancing understanding of the genomes of two important and distantly related conifer species, loblolly pine (Pinus taeda L.) and bald cypress (Taxodium distichum (L.) Rich. var. distichum). Loblolly pine is the most commercially important tree crop in the United States, the major source of pulpwood for paper manufacturing, a source of quality lumber, a prime bioenergy feedstock, and an important part of the ecosystem of the southeastern U.S. Bald cypress is the dominant tree species in the aptly named "cypress swamps" of the South. Its ecological importance to the wetlands of the southern U.S. is immeasurable. Moreover, bald cypress is a popular ornamental due to its attractive appearance and extreme resistance to pests, pathogens, and weather. Maintaining the security and productiveness of these important crop/forest species in the face of new pest, pathogen and environmental threats will require a better understanding of their genes and the structures of their genomes. We have conducted a study of loblolly pine and bald cypress in which Cot analysis and DNA sequencing of Cot-filtered DNA were utilized to study genome structure. Cot analysis revealed that loblolly pine and bald cypress genomes are each composed of three major kinetic components which we have deemed highly repetitive (HR), moderately repetitive (MR), and single/low copy (SL). In loblolly pine, the HR, MR, and SL components account for 57, 24, and 10%, of genomic DNA, respectively. Of note, 2.71 % of random genomic sequences (i.e., 580 Mb, an amount roughly three times that of the Arabidopsis genome) show significant (bit score>̲ 60) homology to mRNA sequences. This result suggests that the loblolly pine genome contains many genes or pseudogenes, and/or gene duplications. In bald cypress, the HR, MR, and SL components account for 52, 38, and 4%, of genomic DNA, respectively. Sample sequencing was performed only on the HR component of bald cypress; sequence analysis shows only 0.81% of HR sequence reads with homology to mRNA sequences. My research provides insight into the evolution of these distant conifers and key sequence data that should greatly facilitate ongoing molecular breeding programs.
Author: Chittaranjan Kole
Publisher: Springer Science & Business Media
ISBN: 3540345418
Category : Science
Languages : en
Pages : 252
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Book Description
Forest trees cover one third of the global land surface, constitute many ecosystems, and play a pivotal role in the world economy. This volume details Populus trees, pines, Fagaceae trees, eucalypts, spruces, Douglas fir and black walnut, and offers a first-ever detailed review of Cryptomeria japonica. It thoroughly discusses innovative strategies to address the inherent problems of genome analysis of tree species.
Author: Filippos A. (Phil) Aravanopoulos
Publisher: MDPI
ISBN: 3038972983
Category : Electronic books
Languages : en
Pages : 333
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Book Description
This book is a printed edition of the Special Issue "Genetics and Genomics of Forest Trees" that was published in Forests
Author:
Publisher:
ISBN:
Category :
Languages : en
Pages :
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Book Description
Gene family organization in a genome is an important area in the study of genomics because it provides an structured basis to approach larger, more complex problems like gene expression, biochemical pathways and metabolism. Genes control and mediate many of the biological activities of the cell. Although some genes are single copy, a significant proportion of genes belong to larger gene families. Members of a gene family are related by homology and share significant sequence identity, modular structure, and their products display similarity in biochemical function and a common structural fold. To gain an understanding of the importance of grouping and characterizing genes into families, Chapter 1 provides an overview of gene family organization in genomes, presenting current delineation schemes to recognize members of a family, concepts of current use in this area of study, and a summary of different computational methods applied for the characterization of gene families. The ability to recognize patterns that allow the distinction of genes and the formation of discrete family groups requires the generation and use of multiple classes of information. For any given family, these classes of knowledge would include (1) the sequence properties of the genes and its corresponding proteins, including its possession of defined motifs; (2) the phylogenetic history and pattern of conservation of the gene and the gene product; and (3) the structual features of the gene product. In order to gather this information and furnish the data needed to advance inferences on gene families of the monolignol biosynthetic pathway, Chapter 2 describes the three-dimensional structural models of 4-coumarate:CoA ligase, cinnamoyl-CoA reductase and cinnamyl alcohol dehydrogenase, that were built using a comparative modeling approach. The three proteins show a Rossman fold domain, but they were evolutionarily unrelated. The comparison of the modular structure of the gene (exons) and the protein.
Author: Jonathan Wendel
Publisher: Springer Science & Business Media
ISBN: 3709111307
Category : Science
Languages : en
Pages : 282
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Book Description
In this timely new 2-volume treatise, experts from around the world have banded together to produce a first-of-its-kind synopsis of the exciting and fast moving field of plant evolutionary genomics. In Volume I of Plant Genome Diversity, an update is provided on what we have learned from plant genome sequencing projects. This is followed by more focused chapters on the various genomic “residents” of plant genomes, including transposable elements, centromeres, small RNAs, and the evolutionary dynamics of genes and non-coding sequences. Attention is drawn to advances in our understanding of plant mitochondrial and plastid genomes, as well as the significance of duplication in genic evolution and the non-independent evolution among sequences in plant genomes. Finally, Volume I provides an introduction to the vibrant new frontier of plant epigenomics, describing the current state of our knowledge and the evolutionary implications of the epigenomic landscape.
