Resource Use and Life History Patterns of Juvenile Coho and Chinook Salmon in an Alaskan Estuary

Resource Use and Life History Patterns of Juvenile Coho and Chinook Salmon in an Alaskan Estuary PDF Author: Brianna Dailey Pierce
Publisher:
ISBN:
Category :
Languages : en
Pages : 97

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Book Description
Estuaries are valuable nursery grounds for anadromous Pacific salmon supplying diverse habitats, quality foraging grounds, and a transition between freshwater and saltwater environments. By providing alternative rearing habitats, estuaries may also bolster the life history diversity expressed in a population, thereby increasing population-level stability. Conversely, the degradation and loss of estuarine habitats has been partially responsible for declines in wild salmon populations. In Alaska, most natural systems are largely intact with minimal anthropogenic alterations. However, the human population and associated land use is increasing. Alaska has the opportunity to learn from the mistakes made in the Pacific Northwest and identify and protect the critical rearing habitat of these culturally, economically, and ecologically valuable species. To do so, we need an understanding of how juvenile salmon use Alaskan estuaries. In this thesis, I describe the resource use, residence, and movement patterns of juvenile salmon in the Anchor River estuary in southcentral Alaska. Specifically, I (1) assess the resource partitioning between juvenile Coho and Chinook salmon, (2) determine which age classes use the estuary and for how long, (3) examine the tidal movement of juvenile salmon, and (4) utilize a social network analysis to explore the social structure of juvenile Coho Salmon. Coho and Chinook salmon primarily partitioned resources spatially and to a lesser extent temporally, whereas their prey resources overlapped considerably. Varying abundances of Chinook Salmon provided a natural experiment that I used to determine that Coho Salmon interactively partition habitat resources by primarily occupying tidal marsh channels when Chinook Salmon are present in the main channel. Although juvenile Coho Salmon were present throughout the sampling period (May-Oct), they were most abundant later in the season (Aug) and individuals of all three age classes reared in the estuary for over 100 d. Some Coho Salmon tagged in 2015 were still present in the estuary in 2016. Chinook Salmon were most abundant earlier in the season (Jun-July) and did not remain in the estuary past mid-August. The longest individual residence time for a Chinook Salmon was 42 d. Channel connectivity influenced the tidal movement patterns of Coho Salmon. I used passive integrated transponder (PIT) tags and in-channel antennas to assess fish movement in two marsh channels. In the marsh channel that remained fully connected to the main channel at low tide, fish movement was mostly independent of the tidal stage or channel depth. In the marsh channel that was only marginally connected to the main channel, fish detections were greatest when the tidal stage was high enough to raise the channel depth. However, contrary to my expectations, fish were detected throughout the tidal cycle and at all channel depths, indicating that they used the marginal connection to move between habitat patches even at low tide. Juvenile Coho Salmon social relationships varied through time. I constructed static and dynamic social networks from the time-stamped observations of fish detections to explore the social structure of juvenile Coho Salmon. Fish did not preferentially associate with similarly sized fish. Fish did not appear to maintain stable relationships, but instead exhibited fission-fusion dynamics where social relationships were continually formed and dissolved, indicating that the frequent co-occurrence of individuals is likely due to mutual site fidelity and not social preference. Although the Anchor River is relatively small, the salmon populations it supports are highly important to the culture, economy, and ecology of the region. The results of this thesis demonstrate that the diverse habitats of the estuary support multiple species and life history types for prolonged periods. By appropriately identifying and conserving critical juvenile salmon rearing habitat, we can help maintain healthy salmon populations into the future. This thesis includes an animated dynamic social network (Video S1) provided as supplementary material.

Resource Use and Life History Patterns of Juvenile Coho and Chinook Salmon in an Alaskan Estuary

Resource Use and Life History Patterns of Juvenile Coho and Chinook Salmon in an Alaskan Estuary PDF Author: Brianna Dailey Pierce
Publisher:
ISBN:
Category :
Languages : en
Pages : 97

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Book Description
Estuaries are valuable nursery grounds for anadromous Pacific salmon supplying diverse habitats, quality foraging grounds, and a transition between freshwater and saltwater environments. By providing alternative rearing habitats, estuaries may also bolster the life history diversity expressed in a population, thereby increasing population-level stability. Conversely, the degradation and loss of estuarine habitats has been partially responsible for declines in wild salmon populations. In Alaska, most natural systems are largely intact with minimal anthropogenic alterations. However, the human population and associated land use is increasing. Alaska has the opportunity to learn from the mistakes made in the Pacific Northwest and identify and protect the critical rearing habitat of these culturally, economically, and ecologically valuable species. To do so, we need an understanding of how juvenile salmon use Alaskan estuaries. In this thesis, I describe the resource use, residence, and movement patterns of juvenile salmon in the Anchor River estuary in southcentral Alaska. Specifically, I (1) assess the resource partitioning between juvenile Coho and Chinook salmon, (2) determine which age classes use the estuary and for how long, (3) examine the tidal movement of juvenile salmon, and (4) utilize a social network analysis to explore the social structure of juvenile Coho Salmon. Coho and Chinook salmon primarily partitioned resources spatially and to a lesser extent temporally, whereas their prey resources overlapped considerably. Varying abundances of Chinook Salmon provided a natural experiment that I used to determine that Coho Salmon interactively partition habitat resources by primarily occupying tidal marsh channels when Chinook Salmon are present in the main channel. Although juvenile Coho Salmon were present throughout the sampling period (May-Oct), they were most abundant later in the season (Aug) and individuals of all three age classes reared in the estuary for over 100 d. Some Coho Salmon tagged in 2015 were still present in the estuary in 2016. Chinook Salmon were most abundant earlier in the season (Jun-July) and did not remain in the estuary past mid-August. The longest individual residence time for a Chinook Salmon was 42 d. Channel connectivity influenced the tidal movement patterns of Coho Salmon. I used passive integrated transponder (PIT) tags and in-channel antennas to assess fish movement in two marsh channels. In the marsh channel that remained fully connected to the main channel at low tide, fish movement was mostly independent of the tidal stage or channel depth. In the marsh channel that was only marginally connected to the main channel, fish detections were greatest when the tidal stage was high enough to raise the channel depth. However, contrary to my expectations, fish were detected throughout the tidal cycle and at all channel depths, indicating that they used the marginal connection to move between habitat patches even at low tide. Juvenile Coho Salmon social relationships varied through time. I constructed static and dynamic social networks from the time-stamped observations of fish detections to explore the social structure of juvenile Coho Salmon. Fish did not preferentially associate with similarly sized fish. Fish did not appear to maintain stable relationships, but instead exhibited fission-fusion dynamics where social relationships were continually formed and dissolved, indicating that the frequent co-occurrence of individuals is likely due to mutual site fidelity and not social preference. Although the Anchor River is relatively small, the salmon populations it supports are highly important to the culture, economy, and ecology of the region. The results of this thesis demonstrate that the diverse habitats of the estuary support multiple species and life history types for prolonged periods. By appropriately identifying and conserving critical juvenile salmon rearing habitat, we can help maintain healthy salmon populations into the future. This thesis includes an animated dynamic social network (Video S1) provided as supplementary material.

Species Profiles

Species Profiles PDF Author: Mark A. Allen
Publisher:
ISBN:
Category : Chinook salmon
Languages : en
Pages : 40

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Life History Patterns and Ecology of Juvenile Coho Salmon (Oncorhynchus Kisutch) Within a Tidal Freshwater Estuary

Life History Patterns and Ecology of Juvenile Coho Salmon (Oncorhynchus Kisutch) Within a Tidal Freshwater Estuary PDF Author: Bethany E. Craig
Publisher:
ISBN:
Category : Coho salmon
Languages : en
Pages : 170

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Juvenile Chinook Salmon (Oncorhynchus Tshawytscha) Life History Diversity and Growth Variability in a Large Freshwater Tidal Estuary

Juvenile Chinook Salmon (Oncorhynchus Tshawytscha) Life History Diversity and Growth Variability in a Large Freshwater Tidal Estuary PDF Author: Pascale A. L. Goertler
Publisher:
ISBN:
Category :
Languages : en
Pages : 91

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Book Description
For many fish and wildlife species, a mosaic of available habitats is required to complete their life cycle, and is considered necessary to ensure population stability and persistence. Particularly for young animals, nursery habitats provide opportunities for rapid growth and high survival during this vulnerable life stage. My thesis focuses on juvenile Chinook salmon (Oncorhynchus tshawytscha) and their use of estuarine wetlands as nursery habitat. Estuaries are highly productive systems representing a mosaic of habitats connecting rivers to the sea, and freshwater tidal estuaries provide abundant prey communities, shade, refuge from predation and transitional habitat for the osmoregulatory changes experienced by anadromous fishes. I will be discussing the freshwater tidal wetland habitat use of juvenile Chinook salmon in the Columbia River estuary, which are listed under the Endangered Species Act. I used otolith microstructural growth estimates and prey consumption to measure rearing habitat quality. This sampling effort was designed to target as much genetic diversity as possible, and individual assignment to regional stocks of origin was used to describe the diversity of juvenile Chinook salmon groups inhabiting the estuary. Diversity is important for resilience, and in salmon biocomplexity within fish stocks has been shown to ensure collective productivity despite environmental change. However much of the research which links diversity to resilience in salmon has focused on the adult portion of the life cycle and many resource management policies oversimplify juvenile life history diversity. When this oversimplification of juvenile life history diversity is applied to salmon conservation it may be ignoring critical indicators for stability. Therefore in addition to genetic diversity I also explore methods for better defining juvenile life history diversity and its application in salmon management, such as permitting requirements, habitat restoration, hydropower practices and hatchery management. This study addresses how juvenile salmon growth changes among a range of wetland habitats in the freshwater tidal portion of the Columbia River estuary and how growth variation describes and contributes to life history diversity. To do this, I incorporated otolith microstructure, individual assignment to regional stock of origin, GIS habitat mapping and diet composition, in three habitats (mainstem river, tributary confluence and backwater channel) along ~130 km of the upper estuary. For my first chapter I employed a generalized linear model (GLM) to test three hypotheses: juvenile Chinook growth was best explained by (1) temporal factors, (2) habitat use, or (3) demographic characteristics, such as stock of origin or the timing of seaward migration. I found that variation in growth was best explained by habitat type and an interaction between fork length and month of capture. Juvenile Chinook salmon grew faster in backwater channel habitat and later in the summer. I also found that mid-summer and late summer/fall subyearlings had the highest estuarine growth rates. When compared to other studies in the basin these juvenile Chinook grew on average 0.23, 0.11-0.43 mm/d in the freshwater tidal estuary, similar to estimates in the brackish estuary, but ~4 times slower than those in the plume and upstream reservoirs. However, survival studies from the system elucidated a possible tradeoff between growth and survival in the Columbia River basin. These findings present a unique example of the complexity in understanding the influences of the many processes that generate variation in growth rate for juvenile anadromous fish inhabiting estuaries. In my second chapter, I used otolith microstructure and growth trends produced in a dynamic factor analysis (DFA, a multivariate time series method only recently being used in fisheries) to identify the life history variation in juvenile Chinook salmon caught in the Columbia River estuary over a two-year period (2010-2012). I used genetic assignment to stock of origin and capture location and date with growth trajectories, as a proxy for habitat transitions, to reconstruct life history types. DFA estimated four to five growth trends were present in juvenile Chinook salmon caught in the Columbia River estuary, diversity currently being simplified in many management practices. Regional stocks and habitats did not display divergent growth histories, but the marked hatchery fish did ordinate very similarly in the trend loadings from the DFA analysis, suggesting that hatchery fish may not experience the same breadth of growth variability as wild fish. I was not able to quantify juvenile life history diversity, and juvenile Chinook life history diversity remains difficult to catalog and integrate into species conservation and habitat restoration for resource management. However, by expanding our understanding of how juvenile Chinook salmon experience their freshwater rearing environment we improve our capacity to conserve and manage salmon populations. The findings from my thesis provide the necessary information for a restoration framework to link habitat features with salmon management goals, such as juvenile growth, wild and genetic origin and life history diversity.

The Behavior and Ecology of Pacific Salmon and Trout

The Behavior and Ecology of Pacific Salmon and Trout PDF Author: Thomas P. Quinn
Publisher: UBC Press
ISBN: 0774842431
Category : Nature
Languages : en
Pages : 392

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Book Description
The Behavior and Ecology of Pacific Salmon and Trout explains the patterns of mate choice, the competition for nest sites, and the fate of the salmon after their death. It describes the lives of offspring during the months they spend incubating in gravel, growing in fresh water, and migrating out to sea to mature. This thorough, up-to-date survey should be on the shelf of everyone with a professional or personal interest in Pacific salmon and trout. Written in a technically accurate but engaging style, it will appeal to a wide range of readers, including students, anglers, biologists, conservationists, legislators, and armchair naturalists.

Trophic Pathways Supporting Juvenile Chinook and Coho Salmon in the Glacial Susitna River, Alaska

Trophic Pathways Supporting Juvenile Chinook and Coho Salmon in the Glacial Susitna River, Alaska PDF Author: Kristin M. Rine
Publisher:
ISBN:
Category : Chinook salmon
Languages : en
Pages : 164

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Book Description
In large, seasonally dynamic and spatially complex watersheds, the availability and relative importance of various food resources for stream fishes can be expected to vary substantially. While numerous studies have attempted to uncover the trophic linkages that support stream salmonids, much of these efforts have occurred at small scales that disregard variability of food resources inherent in lotic systems. This study aimed to determine large-scale patterns in the contributions of freshwater, terrestrial, and marine-derived food resources to juvenile Chinook and Coho salmon (Oncorhynchus tshawytscha and O. kisutch) in the large, glacially influenced Susitna River, Alaska. I quantified diet patterns both spatially, across different macrohabitat types positioned along a 169-km segment of the river corridor, and temporally, from June to October, using stable isotope and stomach content analyses. To further resolve energy pathways from basal carbon sources to juvenile salmon, I determined the relative roles of terrestrial organic matter and freshwater periphyton food sources to aquatic benthic invertebrate diets. The latter analysis showed that invertebrate consumers were more reliant on freshwater periphyton than on terrestrial organic matter. Bayesian stable isotope mixing models indicated that juvenile salmon in the middle Susitna River were, in turn, largely supported by freshwater invertebrate prey regardless of spatial and temporal context. The relative contribution of marine-derived prey (salmon eggs) to juvenile salmon diets was greatest in the fall within tributary mouth and off-channel macrohabitats during both years of the study. Terrestrial invertebrate prey contributions were generally greatest during mid-summer within all macrohabitat types sampled, however this pattern varied across years. No upstream to downstream diet pattern was apparent from the data. These results underscore the importance of freshwater energy pathways for sustaining juvenile Chinook and Coho salmon in the Susitna River and provide further spatial and temporal context for the importance of pulsed marine and terrestrial prey subsidies. As Pacific salmon stocks continue to decline, management and mitigation efforts should operate on knowledge gained from studies that encompass the largescale spatial and temporal variability inherent in riverine landscapes.

Life Histories of Juvenile Chinook Salmon in the Columbia River Estuary

Life Histories of Juvenile Chinook Salmon in the Columbia River Estuary PDF Author: Jennifer L. Burke
Publisher:
ISBN:
Category : Chinook salmon
Languages : en
Pages : 176

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Gutshop '78

Gutshop '78 PDF Author: Sandy J. Lipovsky
Publisher:
ISBN:
Category : Fishes
Languages : en
Pages : 248

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Alaska Salmon Research, 1999

Alaska Salmon Research, 1999 PDF Author:
Publisher:
ISBN:
Category : Pacific salmon
Languages : en
Pages : 242

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Canadian Journal of Fisheries and Aquatic Sciences

Canadian Journal of Fisheries and Aquatic Sciences PDF Author:
Publisher:
ISBN:
Category : Aquatic sciences
Languages : en
Pages : 648

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