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Author: Rudolf Fleischer
Publisher: Springer
ISBN: 3540363831
Category : Computers
Languages : en
Pages : 295
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Book Description
Experimental algorithmics, as its name indicates, combines algorithmic work and experimentation: algorithms are not just designed, but also implemented and tested on a variety of instances. Perhaps the most important lesson in this process is that designing an algorithm is but the first step in the process of developing robust and efficient software for applications. Based on a seminar held at Dagstuhl Castle, Germany in September 2000, this state-of-the-art survey presents a coherent survey of the work done in the area so far. The 11 carefully reviewed chapters provide complete coverage of all current topics in experimental algorithmics.
Author: Rudolf Fleischer
Publisher: Springer
ISBN: 3540363831
Category : Computers
Languages : en
Pages : 295
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Book Description
Experimental algorithmics, as its name indicates, combines algorithmic work and experimentation: algorithms are not just designed, but also implemented and tested on a variety of instances. Perhaps the most important lesson in this process is that designing an algorithm is but the first step in the process of developing robust and efficient software for applications. Based on a seminar held at Dagstuhl Castle, Germany in September 2000, this state-of-the-art survey presents a coherent survey of the work done in the area so far. The 11 carefully reviewed chapters provide complete coverage of all current topics in experimental algorithmics.
Author: Guohui Lin
Publisher: Springer Science & Business Media
ISBN: 3540735445
Category : Computers
Languages : en
Pages : 580
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Book Description
The refereed proceedings of the 13th Annual International Computing and Combinatorics Conference, COCOON 2007, held in Banff, Canada in July 2007. The 51 revised full papers presented together with abstracts of 3 invited talks were carefully reviewed and selected from 154 submissions. The papers feature original research works in the areas of algorithms, theory of computation, computational complexity, and combinatorics related to computing.
Author: O. R. P. Bininda-Emonds
Publisher: Springer Science & Business Media
ISBN: 9781402023286
Category : Computers
Languages : en
Pages : 572
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Book Description
This is the first book on "phylogenetic supertrees", a recent, but controversial development for inferring evolutionary trees. Rather than analyze the combined primary character data directly, supertree construction proceeds by combining the tree topologies derived from those data. This difference in strategy has allowed for the exciting possibility of larger, more complete phylogenies than are otherwise currently possible, with the potential to revolutionize evolutionarily-based research. This book provides a comprehensive look at supertrees, ranging from the methods used to build supertrees to the significance of supertrees to bioinformatic and biological research. Reviews of many the major supertree methods are provided and four new techniques, including a Bayesian implementation of supertrees, are described for the first time. The far-reaching impact of supertrees on biological research is highlighted both in general terms and through specific examples from diverse clades such as flowering plants, even-toed ungulates, and primates. The book also critically examines the many outstanding challenges and problem areas for this relatively new field, showing the way for supertree construction in the age of genomics. Interdisciplinary contributions from the majority of the leading authorities on supertree construction in all areas of the bioinformatic community (biology, computer sciences, and mathematics) will ensure that this book is a valuable reference with wide appeal to anyone interested in phylogenetic inference.
Author: Tandy Warnow
Publisher: Cambridge University Press
ISBN: 1107184711
Category : Computers
Languages : en
Pages : 399
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Book Description
This book presents the foundations of phylogeny estimation and technical material enabling researchers to develop improved computational methods.
Author: Lusheng Wang
Publisher: Springer Science & Business Media
ISBN: 3540280618
Category : Computers
Languages : en
Pages : 1010
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Book Description
The refereed proceedings of the 11th Annual International Computing and Combinatorics Conference, COCOON 2005, held in Kunming, China in August 2005. The 96 revised full papers presented together with abstracts of 3 invited talks were carefully reviewed and selected from 353 submissions. The papers cover most aspects of theoretical computer science and combinatorics related to computing and are organized in topical sections on bioinformatics, networks, string algorithms, scheduling, complexity, steiner trees, graph drawing and layout design, quantum computing, randomized algorithms, geometry, codes, finance, facility location, graph theory, graph algorithms.
Author: Trevor R. Hodkinson
Publisher: CRC Press
ISBN: 1420009532
Category : Mathematics
Languages : en
Pages : 374
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Book Description
To document the world's diversity of species and reconstruct the tree of life we need to undertake some simple but mountainous tasks. Most importantly, we need to tackle species rich groups. We need to collect, name, and classify them, and then position them on the tree of life. We need to do this systematically across all groups of organisms and b
Author: Vincent Moulton
Publisher: Springer Science & Business Media
ISBN: 3642152937
Category : Computers
Languages : en
Pages : 385
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Book Description
This book constitutes the refereed proceedings of the 10th International Workshop on Algorithms in Bioinformatics, WABI 2010, held in Liverpool, UK, in September 2010. The 30 revised full papers presented were carefully reviewed and selected from 83 submissions. The papers are organized in topical sections on biomolecular structure: RNA, protein and molecular comparison; comparative genomics; haplotype and genotype analysis; high-throughput data analysis: next generation sequencing and flow cytometry; networks; phylogenetics; and sequences, strings and motifs.
Author: Tandy Warnow
Publisher: Springer
ISBN: 3030108376
Category : Computers
Languages : en
Pages : 426
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Book Description
This volume presents a compelling collection of state-of-the-art work in algorithmic computational biology, honoring the legacy of Professor Bernard M.E. Moret in this field. Reflecting the wide-ranging influences of Prof. Moret’s research, the coverage encompasses such areas as phylogenetic tree and network estimation, genome rearrangements, cancer phylogeny, species trees, divide-and-conquer strategies, and integer linear programming. Each self-contained chapter provides an introduction to a cutting-edge problem of particular computational and mathematical interest. Topics and features: addresses the challenges in developing accurate and efficient software for the NP-hard maximum likelihood phylogeny estimation problem; describes the inference of species trees, covering strategies to scale phylogeny estimation methods to large datasets, and the construction of taxonomic supertrees; discusses the inference of ultrametric distances from additive distance matrices, and the inference of ancestral genomes under genome rearrangement events; reviews different techniques for inferring evolutionary histories in cancer, from the use of chromosomal rearrangements to tumor phylogenetics approaches; examines problems in phylogenetic networks, including questions relating to discrete mathematics, and issues of statistical estimation; highlights how evolution can provide a framework within which to understand comparative and functional genomics; provides an introduction to Integer Linear Programming and its use in computational biology, including its use for solving the Traveling Salesman Problem. Offering an invaluable source of insights for computer scientists, applied mathematicians, and statisticians, this illuminating volume will also prove useful for graduate courses on computational biology and bioinformatics.
Author: Ben Raphael
Publisher: Springer
ISBN: 364233122X
Category : Computers
Languages : en
Pages : 465
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Book Description
This book constitutes the refereed proceedings of the 12th International Workshop on Algorithms in Bioinformatics, WABI 2012, held in Ljubljana, Slovenia, in September 2012. WABI 2012 is one of six workshops which, along with the European Symposium on Algorithms (ESA), constitute the ALGO annual meeting and focuses on algorithmic advances in bioinformatics, computational biology, and systems biology with a particular emphasis on discrete algorithms and machine-learning methods that address important problems in molecular biology. The 35 full papers presented were carefully reviewed and selected from 92 submissions. The papers include algorithms for a variety of biological problems including phylogeny, DNA and RNA sequencing and analysis, protein structure, and others.
Author: Teresa M. Przytycka
Publisher: Springer
ISBN: 3642230385
Category : Computers
Languages : en
Pages : 388
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Book Description
This book constitutes the refereed proceedings of the 11th International Workshop on Algorithms in Bioinformatics, WABI 2011, held in Saarbrücken, Germany, in September 2011. The 30 papers presented were carefully reviewed and selected from 77 submissions. They cover aspects of algorithms in bioinformatics, computational biology and systems biology.
