The Phylogenetic Handbook

The Phylogenetic Handbook PDF Author: Marco Salemi
Publisher: Cambridge University Press
ISBN: 0521877105
Category : Science
Languages : en
Pages : 750

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Book Description
A broad, hands on guide with detailed explanations of current methodology, relevant exercises and popular software tools.

The Phylogenetic Handbook

The Phylogenetic Handbook PDF Author: Marco Salemi
Publisher: Cambridge University Press
ISBN: 0521877105
Category : Science
Languages : en
Pages : 750

Get Book

Book Description
A broad, hands on guide with detailed explanations of current methodology, relevant exercises and popular software tools.

Phylogenetics

Phylogenetics PDF Author: E. O. Wiley
Publisher: John Wiley & Sons
ISBN: 0470905964
Category : Science
Languages : en
Pages : 444

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Book Description
The long-awaited revision of the industry standard on phylogenetics Since the publication of the first edition of this landmark volume more than twenty-five years ago, phylogenetic systematics has taken its place as the dominant paradigm of systematic biology. It has profoundly influenced the way scientists study evolution, and has seen many theoretical and technical advances as the field has continued to grow. It goes almost without saying that the next twenty-five years of phylogenetic research will prove as fascinating as the first, with many exciting developments yet to come. This new edition of Phylogenetics captures the very essence of this rapidly evolving discipline. Written for the practicing systematist and phylogeneticist, it addresses both the philosophical and technical issues of the field, as well as surveys general practices in taxonomy. Major sections of the book deal with the nature of species and higher taxa, homology and characters, trees and tree graphs, and biogeography—the purpose being to develop biologically relevant species, character, tree, and biogeographic concepts that can be applied fruitfully to phylogenetics. The book then turns its focus to phylogenetic trees, including an in-depth guide to tree-building algorithms. Additional coverage includes: Parsimony and parsimony analysis Parametric phylogenetics including maximum likelihood and Bayesian approaches Phylogenetic classification Critiques of evolutionary taxonomy, phenetics, and transformed cladistics Specimen selection, field collecting, and curating Systematic publication and the rules of nomenclature Providing a thorough synthesis of the field, this important update to Phylogenetics is essential for students and researchers in the areas of evolutionary biology, molecular evolution, genetics and evolutionary genetics, paleontology, physical anthropology, and zoology.

Mathematics of Evolution and Phylogeny

Mathematics of Evolution and Phylogeny PDF Author: Olivier Gascuel
Publisher: OUP Oxford
ISBN: 9780191513732
Category : Mathematics
Languages : en
Pages : 444

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Book Description
This book considers evolution at different scales: sequences, genes, gene families, organelles, genomes and species. The focus is on the mathematical and computational tools and concepts, which form an essential basis of evolutionary studies, indicate their limitations, and give them orientation. Recent years have witnessed rapid progress in the mathematics of evolution and phylogeny, with models and methods becoming more realistic, powerful, and complex. Aimed at graduates and researchers in phylogenetics, mathematicians, computer scientists and biologists, and including chapters by leading scientists: A. Bergeron, D. Bertrand, D. Bryant, R. Desper, O. Elemento, N. El-Mabrouk, N. Galtier, O. Gascuel, M. Hendy, S. Holmes, K. Huber, A. Meade, J. Mixtacki, B. Moret, E. Mossel, V. Moulton, M. Pagel, M.-A. Poursat, D. Sankoff, M. Steel, J. Stoye, J. Tang, L.-S. Wang, T. Warnow, Z. Yang, this book of contributed chapters explains the basis and covers the recent results in this highly topical area.

Parsimony, Phylogeny, and Genomics

Parsimony, Phylogeny, and Genomics PDF Author: Victor A. Albert
Publisher: Oxford University Press
ISBN: 0198564937
Category : Science
Languages : en
Pages : 240

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Book Description
"This book examines the potential that parsimony analysis (cladistics) summarization method has for both structural and functional comparative genomic research"--Provided by publisher.

Phylogeny

Phylogeny PDF Author: Mike Steel
Publisher: SIAM
ISBN: 161197447X
Category : Science
Languages : en
Pages : 302

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Book Description
Phylogenetics is a topical and growing area of research. Phylogenies (phylogenetic trees and networks) allow biologists to study and graph evolutionary relationships between different species. These are also used to investigate other evolutionary processes?for example, how languages developed or how different strains of a virus (such as HIV or influenza) are related to each other. This self-contained book addresses the underlying mathematical theory behind the reconstruction and analysis of phylogenies. The theory is grounded in classical concepts from discrete mathematics and probability theory as well as techniques from other branches of mathematics (algebra, topology, differential equations). The biological relevance of the results is highlighted throughout. The author supplies proofs of key classical theorems and includes results not covered in existing books, emphasizes relevant mathematical results derived over the past 20 years, and provides numerous exercises, examples, and figures.

Phylogeny and Evolution of the Mollusca

Phylogeny and Evolution of the Mollusca PDF Author: Winston Ponder
Publisher: Univ of California Press
ISBN: 9780520250925
Category : Nature
Languages : en
Pages : 496

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Book Description
"Ponder and Lindberg provides a breathtaking overview of the evolutionary history of the Mollusca, effectively melding information from anatomy, ecology, genomics, and paleobiology to explore the depths of molluscan phylogeny. Its outstanding success is due to thoughtful planning, focused complementary contributions from 36 expert authors, and careful editing. This volume is a must for malacologists."—Bruce Runnegar, Department of Earth and Space Sciences, University of California, Los Angeles "Our understanding of the phylogeny and evolutionary history of the mollusca has been revolutionized over the past two decades through new molecular data and analysis, and reinvestigation of morphological characters. In this volume Ponder, Lindberg, and their colleagues do a wonderful job of integrating this work to provide new perspectives on the relationships of the major molluscan clades, their evolutionary dynamics, and their history. Particularly timely is the coverage of molluscan evo-devo and genomics."—Douglas H. Erwin, Curator of Paleozoic Invertebrates, National Museum of Natural History

Molecular Biology and Pathogenicity of Mycoplasmas

Molecular Biology and Pathogenicity of Mycoplasmas PDF Author: Shmuel Razin
Publisher: Springer Science & Business Media
ISBN: 0306476061
Category : Science
Languages : en
Pages : 574

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Book Description
was the result of the efforts of Robert Cleverdon. The rapidly developing discipline of molecular biology and the rapidly expanding knowledge of the PPLO were brought together at this meeting. In addition to the PPLO specialists, the conference invited Julius Marmur to compare PPLO DNA to DNA of other organisms; David Garfinkel, who was one of the first to develop computer models of metabolism; Cyrus Levinthal to talk about coding; and Henry Quastler to discuss information theory constraints on very small cells. The conference was an announcement of the role of PPLO in the fundamental understanding of molecular biology. Looking back 40-some years to the Connecticut meeting, it was a rather bold enterprise. The meeting was international and inter-disciplinary and began a series of important collaborations with influences resonating down to the present. If I may be allowed a personal remark, it was where I first met Shmuel Razin, who has been a leading figure in the emerging mycoplasma research and a good friend. This present volume is in some ways the fulfillment of the promise of that early meeting. It is an example of the collaborative work of scientists in building an understanding of fundamental aspects of biology.

Computational Phylogenetics

Computational Phylogenetics PDF Author: Tandy Warnow
Publisher: Cambridge University Press
ISBN: 1107184711
Category : Computers
Languages : en
Pages : 399

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Book Description
This book presents the foundations of phylogeny estimation and technical material enabling researchers to develop improved computational methods.

Phylogeny and Classification of the Orchid Family

Phylogeny and Classification of the Orchid Family PDF Author: Robert L. Dressler
Publisher: Cambridge University Press
ISBN: 9780521450584
Category : Gardening
Languages : en
Pages : 342

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Book Description
A valuable contribution to the on-going discussions on evolution within the Orchid family. Dressler's work delimits several major natural groups and emphasises areas needing further study.

Fossils, Phylogeny, and Form

Fossils, Phylogeny, and Form PDF Author: Jonathan M. Adrain
Publisher: Springer Science & Business Media
ISBN: 1461505712
Category : Science
Languages : en
Pages : 420

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Book Description
Phylogenetic analysis and morphometrics have been developed by biologists into rigorous analytic tools for testing hypotheses about the relationships between groups of species. This book applies these tools to paleontological data. The fossil record is our one true chronicle of the history of life, preserving a set of macroevolutionary patterns; thus various hypotheses about evolutionary processes can be tested in the fossil record using phylogentic analysis and morphometrics. The first book of its type, Fossils, Phylogeny, and Form will be useful in evolutionary biology, paleontology, systematics, evolutionary development, theoretical biology, biogeography, and zoology. It will also provide a practical, researcher-friendly gateway into computer-based phylogenetics and morphometrics.