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Author: Anita Meghan Sinha
Publisher:
ISBN:
Category :
Languages : en
Pages :
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Book Description
Magnetic resonance imaging (MRI) plays an integral role in the study, diagnosis and treatment of neurological diseases. Neuroimaging analyses involve high-dimensional, large-scale data that contain rich spatial and temporal information about the dynamic and integrated systems in the brain. Therefore, it has become imperative to develop and optimize analytical approaches drawn from engineering and mathematics to more precisely model these complex patterns and interactions, which will advance our understanding of functional brain organization in health and disease. Chapter 1 provides an overview and background of MRI, with a particular focus on the use of resting-state functional magnetic resonance imaging (rs-fMRI) to capture and characterize brain connectivity. Previous work of statistical methods developed for fMRI analysis are reviewed. Chapter 2 presents an analysis of changes in functional connectivity and behavioral outcomes in patients of stroke who undergo brain-computer interface (BCI) interventional therapy. This work employs a widely used network-based inference method for fMRI analysis that serves as motivation for subsequent work to overcome statistical challenges associated with its use to more effectively model and characterize brain network dynamics and organization in a robust manner. Chapter 3 presents a novel application of differential covariance trajectory analysis as promising framework for brain network modeling using rs-fMRI data. The proposed algorithm models functional connectivity as trajectories on the manifold and employs a localization procedure to search over and identify subsets of first- and second-order differences in brain connectivity features between patients with Temporal Lobe Epilepsy (TLE) and healthy control subjects. Chapter 4 extends the work presented in the previous chapter to apply the combined differential covariance trajectory and scan statistics framework to characterize the Alzheimer's Disease connectome. We demonstrate the utility and robustness of this method to study altered brain network organization in large-scale functional networks in a different and older clinical population, which is notably of smaller sample size, where the statistical signal may be weak. Chapter 5 discusses conclusions and key takeaways of the work, along with potential future avenues of research.
Author: Anita Meghan Sinha
Publisher:
ISBN:
Category :
Languages : en
Pages :
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Book Description
Magnetic resonance imaging (MRI) plays an integral role in the study, diagnosis and treatment of neurological diseases. Neuroimaging analyses involve high-dimensional, large-scale data that contain rich spatial and temporal information about the dynamic and integrated systems in the brain. Therefore, it has become imperative to develop and optimize analytical approaches drawn from engineering and mathematics to more precisely model these complex patterns and interactions, which will advance our understanding of functional brain organization in health and disease. Chapter 1 provides an overview and background of MRI, with a particular focus on the use of resting-state functional magnetic resonance imaging (rs-fMRI) to capture and characterize brain connectivity. Previous work of statistical methods developed for fMRI analysis are reviewed. Chapter 2 presents an analysis of changes in functional connectivity and behavioral outcomes in patients of stroke who undergo brain-computer interface (BCI) interventional therapy. This work employs a widely used network-based inference method for fMRI analysis that serves as motivation for subsequent work to overcome statistical challenges associated with its use to more effectively model and characterize brain network dynamics and organization in a robust manner. Chapter 3 presents a novel application of differential covariance trajectory analysis as promising framework for brain network modeling using rs-fMRI data. The proposed algorithm models functional connectivity as trajectories on the manifold and employs a localization procedure to search over and identify subsets of first- and second-order differences in brain connectivity features between patients with Temporal Lobe Epilepsy (TLE) and healthy control subjects. Chapter 4 extends the work presented in the previous chapter to apply the combined differential covariance trajectory and scan statistics framework to characterize the Alzheimer's Disease connectome. We demonstrate the utility and robustness of this method to study altered brain network organization in large-scale functional networks in a different and older clinical population, which is notably of smaller sample size, where the statistical signal may be weak. Chapter 5 discusses conclusions and key takeaways of the work, along with potential future avenues of research.
Author: William D. Penny
Publisher: Elsevier
ISBN: 0080466508
Category : Psychology
Languages : en
Pages : 689
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Book Description
In an age where the amount of data collected from brain imaging is increasing constantly, it is of critical importance to analyse those data within an accepted framework to ensure proper integration and comparison of the information collected. This book describes the ideas and procedures that underlie the analysis of signals produced by the brain. The aim is to understand how the brain works, in terms of its functional architecture and dynamics. This book provides the background and methodology for the analysis of all types of brain imaging data, from functional magnetic resonance imaging to magnetoencephalography. Critically, Statistical Parametric Mapping provides a widely accepted conceptual framework which allows treatment of all these different modalities. This rests on an understanding of the brain's functional anatomy and the way that measured signals are caused experimentally. The book takes the reader from the basic concepts underlying the analysis of neuroimaging data to cutting edge approaches that would be difficult to find in any other source. Critically, the material is presented in an incremental way so that the reader can understand the precedents for each new development. This book will be particularly useful to neuroscientists engaged in any form of brain mapping; who have to contend with the real-world problems of data analysis and understanding the techniques they are using. It is primarily a scientific treatment and a didactic introduction to the analysis of brain imaging data. It can be used as both a textbook for students and scientists starting to use the techniques, as well as a reference for practicing neuroscientists. The book also serves as a companion to the software packages that have been developed for brain imaging data analysis. An essential reference and companion for users of the SPM software Provides a complete description of the concepts and procedures entailed by the analysis of brain images Offers full didactic treatment of the basic mathematics behind the analysis of brain imaging data Stands as a compendium of all the advances in neuroimaging data analysis over the past decade Adopts an easy to understand and incremental approach that takes the reader from basic statistics to state of the art approaches such as Variational Bayes Structured treatment of data analysis issues that links different modalities and models Includes a series of appendices and tutorial-style chapters that makes even the most sophisticated approaches accessible
Author: Jörg Polzehl
Publisher: Springer Nature
ISBN: 3030291847
Category : Medical
Languages : en
Pages : 231
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Book Description
This book discusses the modeling and analysis of magnetic resonance imaging (MRI) data acquired from the human brain. The data processing pipelines described rely on R. The book is intended for readers from two communities: Statisticians who are interested in neuroimaging and looking for an introduction to the acquired data and typical scientific problems in the field; and neuroimaging students wanting to learn about the statistical modeling and analysis of MRI data. Offering a practical introduction to the field, the book focuses on those problems in data analysis for which implementations within R are available. It also includes fully worked examples and as such serves as a tutorial on MRI analysis with R, from which the readers can derive their own data processing scripts. The book starts with a short introduction to MRI and then examines the process of reading and writing common neuroimaging data formats to and from the R session. The main chapters cover three common MR imaging modalities and their data modeling and analysis problems: functional MRI, diffusion MRI, and Multi-Parameter Mapping. The book concludes with extended appendices providing details of the non-parametric statistics used and the resources for R and MRI data.The book also addresses the issues of reproducibility and topics like data organization and description, as well as open data and open science. It relies solely on a dynamic report generation with knitr and uses neuroimaging data publicly available in data repositories. The PDF was created executing the R code in the chunks and then running LaTeX, which means that almost all figures, numbers, and results were generated while producing the PDF from the sources.
Author: Jonathan H. Gillard
Publisher: Cambridge University Press
ISBN: 0521515637
Category : Medical
Languages : en
Pages : 917
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Book Description
Covers each physiological MR methodology and their applications to all major neurological diseases.
Author: Gautam Prasad
Publisher:
ISBN:
Category :
Languages : en
Pages : 119
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Book Description
We present a collection of methods that model and interpret information represented in structural magnetic resonance imaging (MRI) and diffusion MRI images of the living human brain. Our solution to the problem of brain segmentation in structural MRI combines artificial life and deformable models to develop a customizable plan for segmentation realized as cooperative deformable organisms. We also present work to represent and register white matter pathways as described in diffusion MRI. Our method represents these pathways as maximum density paths (MDPs), which compactly represent information and are compared using shape based registration for population studies. In addition, we present a group of methods focused on connectivity in the brain. These include an optimization for a global probabilistic tractography algorithm that computes fibers representing connectivity pathways in tissue, a novel maximum-flow based measure of connectivity, a classification framework identifying Alzheimer's disease based on connectivity measures, and a statistical framework to find the optimal partition of the brain for connectivity analysis. These methods seek to advance our understanding and analysis of neuroimaging data from crucial pre-processing steps to our fundamental understanding of connectivity in the brain.
Author: Ioannis Tsougos
Publisher: CRC Press
ISBN: 1351216538
Category : Science
Languages : en
Pages : 239
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Book Description
Over the last decade, some of the greatest achievements in the field of neuroimaging have been related to remarkable advances in magnetic resonance techniques, including diffusion, perfusion, magnetic resonance spectroscopy, and functional MRI. Such techniques have provided valuable insights into tissue microstructure, microvasculature, metabolism and brain connectivity. Previously available mostly in research environments, these techniques are now becoming part of everyday clinical practice in a plethora of clinical MR systems. Nevertheless, despite growing interest and wider acceptance, there remains a lack of a comprehensive body of knowledge on the subject, exploring the intrinsic complexity and physical difficulty of the techniques. This book focuses on the basic principles and theories of diffusion, perfusion, magnetic resonance spectroscopy, and functional MRI. It also explores their clinical applications and places emphasis on the associated artifacts and pitfalls with a comprehensive and didactic approach. This book aims to bridge the gap between research applications and clinical practice. It will serve as an educational manual for neuroimaging researchers and radiologists, neurologists, neurosurgeons, and physicists with an interest in advanced MR techniques. It will also be a useful reference text for experienced clinical scientists who wish to optimize their multi-parametric imaging approach.
Author: Michelle Hampson
Publisher: Academic Press
ISBN: 0128224363
Category : Computers
Languages : en
Pages : 366
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Book Description
fMRI Neurofeedback provides a perspective on how the field of functional magnetic resonance imaging (fMRI) neurofeedback has evolved, an introduction to state-of-the-art methods used for fMRI neurofeedback, a review of published neuroscientific and clinical applications, and a discussion of relevant ethical considerations. It gives a view of the ongoing research challenges throughout and provides guidance for researchers new to the field on the practical implementation and design of fMRI neurofeedback protocols. This book is designed to be accessible to all scientists and clinicians interested in conducting fMRI neurofeedback research, addressing the variety of different knowledge gaps that readers may have given their varied backgrounds and avoiding field-specific jargon. The book, therefore, will be suitable for engineers, computer scientists, neuroscientists, psychologists, and physicians working in fMRI neurofeedback. Provides a reference on fMRI neurofeedback covering history, methods, mechanisms, clinical applications, and basic research, as well as ethical considerations Offers contributions from international experts—leading research groups are represented, including from Europe, Japan, Israel, and the United States Includes coverage of data analytic methods, study design, neuroscience mechanisms, and clinical considerations Presents a perspective on future translational development
Author:
Publisher: Academic Press
ISBN: 0123973163
Category : Science
Languages : en
Pages : 2668
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Book Description
Brain Mapping: A Comprehensive Reference, Three Volume Set offers foundational information for students and researchers across neuroscience. With over 300 articles and a media rich environment, this resource provides exhaustive coverage of the methods and systems involved in brain mapping, fully links the data to disease (presenting side by side maps of healthy and diseased brains for direct comparisons), and offers data sets and fully annotated color images. Each entry is built on a layered approach of the content – basic information for those new to the area and more detailed material for experienced readers. Edited and authored by the leading experts in the field, this work offers the most reputable, easily searchable content with cross referencing across articles, a one-stop reference for students, researchers and teaching faculty. Broad overview of neuroimaging concepts with applications across the neurosciences and biomedical research Fully annotated color images and videos for best comprehension of concepts Layered content for readers of different levels of expertise Easily searchable entries for quick access of reputable information Live reference links to ScienceDirect, Scopus and PubMed
Author: Xiaoying Tang
Publisher: Frontiers Media SA
ISBN: 2889459845
Category :
Languages : en
Pages : 118
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Book Description
Computational Anatomy (CA) is an emerging discipline aiming to understand anatomy by utilizing a comprehensive set of mathematical tools. CA focuses on providing precise statistical encodings of anatomy with direct application to a broad range of biological and medical settings. During the past two decades, there has been an ever-increasing pace in the development of neuroimaging techniques, delivering in vivo information on the anatomy and physiological signals of different human organs through a variety of imaging modalities such as MRI, x-ray, CT, and PET. These multi-modality medical images provide valuable data for accurate interpretation and estimation of various biological parameters such as anatomical labels, disease types, cognitive states, functional connectivity between distinct anatomical regions, as well as activation responses to specific stimuli. In the era of big neuroimaging data, Bayes’ theorem provides a powerful tool to deliver statistical conclusions by combining the current information and prior experience. When sufficiently good data is available, Bayes’ theorem can utilize it fully and provide statistical inferences/estimations with the least error rate. Bayes’ theorem arose roughly three hundred years ago and has seen extensive application in many fields of science and technology, including recent neuroimaging, ever since. The last fifteen years have seen a great deal of success in the application of Bayes’ theorem to the field of CA and neuroimaging. That said, given that the power and success of Bayes’ rule largely depends on the validity of its probabilistic inputs, it is still a challenge to perform Bayesian estimation and inference on the typically noisy neuroimaging data of the real world. We assembled contributions focusing on recent developments in CA and neuroimaging through Bayesian estimation and inference, in terms of both methodologies and applications. It is anticipated that the articles in this Research Topic will provide a greater insight into the field of Bayesian imaging analysis.
Author: Young K. Truong
Publisher: CRC Press
ISBN: 1466566159
Category : Mathematics
Languages : en
Pages : 446
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Book Description
Statistical Techniques for Neuroscientists introduces new and useful methods for data analysis involving simultaneous recording of neuron or large cluster (brain region) neuron activity. The statistical estimation and tests of hypotheses are based on the likelihood principle derived from stationary point processes and time series. Algorithms and software development are given in each chapter to reproduce the computer simulated results described therein. The book examines current statistical methods for solving emerging problems in neuroscience. These methods have been applied to data involving multichannel neural spike train, spike sorting, blind source separation, functional and effective neural connectivity, spatiotemporal modeling, and multimodal neuroimaging techniques. The author provides an overview of various methods being applied to specific research areas of neuroscience, emphasizing statistical principles and their software. The book includes examples and experimental data so that readers can understand the principles and master the methods. The first part of the book deals with the traditional multivariate time series analysis applied to the context of multichannel spike trains and fMRI using respectively the probability structures or likelihood associated with time-to-fire and discrete Fourier transforms (DFT) of point processes. The second part introduces a relatively new form of statistical spatiotemporal modeling for fMRI and EEG data analysis. In addition to neural scientists and statisticians, anyone wishing to employ intense computing methods to extract important features and information directly from data rather than relying heavily on models built on leading cases such as linear regression or Gaussian processes will find this book extremely helpful.
