Microbial Metagenomics, Metatranscriptomics, and Metaproteomics PDF Download
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Author:
Publisher: Academic Press
ISBN: 9780124078635
Category : Science
Languages : en
Pages : 0
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Book Description
This new volume of Methods in Enzymology continues the legacy of this premier serial with quality chapters authored by leaders in the field. This volume covers microbial metagenomics, metatranscriptomics, and metaproteomics, and includes chapters on such topics as in-solution FISH for single cell genome preparation, preparation of BAC libraries from marine microbial community DNA, and preparation of microbial community cDNA for metatranscriptomic analysis in marine plankton.
Author:
Publisher: Academic Press
ISBN: 9780124078635
Category : Science
Languages : en
Pages : 0
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Book Description
This new volume of Methods in Enzymology continues the legacy of this premier serial with quality chapters authored by leaders in the field. This volume covers microbial metagenomics, metatranscriptomics, and metaproteomics, and includes chapters on such topics as in-solution FISH for single cell genome preparation, preparation of BAC libraries from marine microbial community DNA, and preparation of microbial community cDNA for metatranscriptomic analysis in marine plankton.
Author: Rama Kant Dubey
Publisher: Springer
ISBN: 3030155161
Category : Nature
Languages : en
Pages : 118
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Book Description
This book explores the significance of soil microbial diversity to understand its utility in soil functions, ecosystem services, environmental sustainability, and achieving the sustainable development goals. With a focus on agriculture and environment, the book highlights the importance of the microbial world by providing state-of-the-art technologies for examining the structural and functional attributes of soil microbial diversity for applications in healthcare, industrial biotechnology, and bioremediation studies. In seven chapters, the book will act as a primer for students, environmental biotechnologists, microbial ecologists, plant scientists, and agricultural microbiologists. Chapter 1 introduces readers to the soil microbiome, and chapter 2 discusses the below ground microbial world. Chapter 3 addresses various methods for exploring microbial diversity, chapter 4 discusses the genomics methods, chapter 5 provides the metaproteomics and metatranscriptomics approaches and chapter 6 details the bioinformatics tools for soil microbial community analysis, and chapter 7 concludes the text with future perspectives on further soil microbial uses and applications.
Author:
Publisher: Academic Press
ISBN: 012407927X
Category : Science
Languages : en
Pages : 683
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Book Description
This new volume of Methods in Enzymology continues the legacy of this premier serial with quality chapters authored by leaders in the field. This volume covers microbial metagenomics, metatranscriptomics, and metaproteomics, and includes chapters on such topics as in-solution FISH for single cell genome preparation, preparation of BAC libraries from marine microbial community DNA, and preparation of microbial community cDNA for metatranscriptomic analysis in marine plankton. - Continues the legacy of this premier serial with quality chapters authored by leaders in the field - Covers microbial metagenomics, metatranscriptomics, and metaproteomics - Contains chapters on such topics as in-solution fluorescence in situ hybridization (FISH) for single cell genome preparation, preparation of BAC libraries from marine microbial community DNA, and preparation of microbial community cDNA for metatranscriptomic analysis in marine plankton
Author: Diana Marco
Publisher: Caister Academic Press Limited
ISBN: 9781904455547
Category : Science
Languages : en
Pages : 0
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Book Description
The book is essential reading for all researchers currently performing metagenomics studies and is highly recommended for all students and scientists wishing to increase their understanding of this field.
Author: Surajit De Mandal
Publisher: CRC Press
ISBN: 1000482235
Category : Nature
Languages : en
Pages : 268
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Book Description
Microorganisms comprise the greatest genetic diversity in the natural ecosystem, and characterization of these microbes is an essential step towards discovering novel products or understanding complex biological mechanisms. The advancement of metagenomics coupled with the introduction of high-throughput, cost-effective NGS technology has expanded the possibilities of microbial research in various biological systems. In addition to traditional culture and biochemical characteristics, omics approaches (metagenomics, metaproteomics, and metatranscriptomics) are useful for analyzing complete microbial communities and their functional attributes in various environments. Metagenomics and Microbial Ecology: Techniques and Applications explores the most recent advances in metagenomics research in the landscape of next-generation sequencing technologies. This book also describes how advances in sequencing technologies are used to study invisible microbes as well as the relationships between microorganisms in their respective environments. Features: Covers a wide range of concepts, investigations, and technological advancement in metagenomics at the global level. Highlights the novel and recent approaches to analyze microbial diversity and its functional attributes. Features a range of chapters that present an introduction to the field and functional insight into various ecosystems.
Author: Robert G. Beiko
Publisher:
ISBN: 9781493987283
Category : Microbiology
Languages : en
Pages : 324
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Book Description
Author: Jacques Izard
Publisher: Academic Press
ISBN: 0124105084
Category : Science
Languages : en
Pages : 188
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Book Description
Concisely discussing the application of high throughput analysis to move forward our understanding of microbial principles, Metagenomics for Microbiology provides a solid base for the design and analysis of omics studies for the characterization of microbial consortia. The intended audience includes clinical and environmental microbiologists, molecular biologists, infectious disease experts, statisticians, biostatisticians, and public health scientists. This book focuses on the technological underpinnings of metagenomic approaches and their conceptual and practical applications. With the next-generation genomic sequencing revolution increasingly permitting researchers to decipher the coding information of the microbes living with us, we now have a unique capacity to compare multiple sites within individuals and at higher resolution and greater throughput than hitherto possible. The recent articulation of this paradigm points to unique possibilities for investigation of our dynamic relationship with these cellular communities, and excitingly the probing of their therapeutic potential in disease prevention or treatment of the future. - Expertly describes the latest metagenomic methodologies and best-practices, from sample collection to data analysis for taxonomic, whole shotgun metagenomic, and metatranscriptomic studies - Includes clear-headed pointers and quick starts to direct research efforts and increase study efficacy, eschewing ponderous prose - Presented topics include sample collection and preparation, data generation and quality control, third generation sequencing, advances in computational analyses of shotgun metagenomic sequence data, taxonomic profiling of shotgun data, hypothesis testing, and mathematical and computational analysis of longitudinal data and time series. Past-examples and prospects are provided to contextualize the applications.
Author: Ana M. Aransay
Publisher: Springer
ISBN: 3319313509
Category : Medical
Languages : en
Pages : 404
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Book Description
High throughput sequencing (HTS) technologies have conquered the genomics and epigenomics worlds. The applications of HTS methods are wide, and can be used to sequence everything from whole or partial genomes, transcriptomes, non-coding RNAs, ribosome profiling, to single-cell sequencing. Having such diversity of alternatives, there is a demand for information by research scientists without experience in HTS that need to choose the most suitable methodology or combination of platforms and to define their experimental designs to achieve their specific objectives. Field Guidelines for Genetic Experimental Designs in High-Throughput Sequencing aims to collect in a single volume all aspects that should be taken into account when HTS technologies are being incorporated into a research project and the reasons behind them. Moreover, examples of several successful strategies will be analyzed to make the point of the crucial features. This book will be of use to all scientist that are unfamiliar with HTS and want to incorporate such technologies to their research.
Author: Frans J. de Bruijn
Publisher: John Wiley & Sons
ISBN: 9780470644799
Category : Science
Languages : en
Pages : 0
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Book Description
The premiere two-volume reference on revelations from studying complex microbial communities in many distinct habitats Metagenomics is an emerging field that has changed the way microbiologists study microorganisms. It involves the genomic analysis of microorganisms by extraction and cloning of DNA from a group of microorganisms, or the direct use of the purified DNA or RNA for sequencing, which allows scientists to bypass the usual protocol of isolating and culturing individual microbial species. This method is now used in laboratories across the globe to study microorganism diversity and for isolating novel medical and industrial compounds. Handbook of Molecular Microbial Ecology is the first comprehensive two-volume reference to cover unculturable microorganisms in a large variety of habitats, which could not previously have been analyzed without metagenomic methodology. It features review articles as well as a large number of case studies, based largely on original publications and written by international experts. This first volume, Metagenomics and Complementary Approaches, covers such topics as: Background information on DNA reassociation and use of 16 rRNA and other DNA fingerprinting approaches Species designation in microbiology Metagenomics: Introduction to the basic tools with examples Consortia and databases Bioinformatics Computer-assisted analysis Complementary approaches—microarrays, metatranscriptomics, metaproteomics, metabolomics, and single cell analysis A special feature of this volume is the highlighting of the databases and computer programs used in each study; they are listed along with their sites in order to facilitate the computer-assisted analysis of the vast amount of data generated by metagenomic studies. Handbook of Molecular Microbial Ecology I is an invaluable reference for researchers in metagenomics, microbiology, and environmental microbiology; those working on the Human Microbiome Project; microbial geneticists; molecular microbial ecologists; and professionals in molecular microbiology and bioinformatics.
Author: Bibhuti Bhusan Mishra
Publisher: John Wiley & Sons
ISBN: 111952623X
Category : Technology & Engineering
Languages : en
Pages : 466
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Book Description
Environmental and Agricultural Microbiology Uniquely reveals the state-of-the-art microbial research/advances in the environment and agriculture fields Environmental and Agricultural Microbiology: Applications for Sustainability is divided into two parts which embody chapters on sustenance and life cycles of microorganisms in various environmental conditions, their dispersal, interactions with other inhabited communities, metabolite production, and reclamation. Though books pertaining to soil & agricultural microbiology/environmental biotechnology are available, there is a dearth of comprehensive literature on the behavior of microorganisms in the environmental and agricultural realm. Part 1 includes bioremediation of agrochemicals by microalgae, detoxification of chromium and other heavy metals by microbial biofilm, microbial biopolymer technology including polyhydroxyalkanoates (PHAs) and polyhydroxybutyrates (PHB), their production, degradability behaviors, and applications. Biosurfactants production and their commercial importance are also systematically represented in this part. Part 2 having 9 chapters, facilitates imperative ideas on approaches for sustainable agriculture through functional soil microbes, next-generation crop improvement strategies via rhizosphere microbiome, production and implementation of liquid biofertilizers, mitigation of methane from livestock, chitinases from microbes, extremozymes, an enzyme from extremophilic microorganism and their relevance in current biotechnology, lithobiontic communities, and their environmental importance, have all been comprehensively elaborated. In the era of sustainable energy production, biofuel and other bioenergy products play a key role, and their production from microbial sources are frontiers for researchers. The final chapter unveils the importance of microbes and their consortia for management of solid waste in amalgamation with biotechnology Audience The book will be read by environmental microbiologists, biotechnologists, chemical and agricultural engineers.
