XML for Bioinformatics

XML for Bioinformatics PDF Author: Ethan Cerami
Publisher: Springer Science & Business Media
ISBN: 0387274782
Category : Computers
Languages : en
Pages : 311

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Book Description
Introduction The goal of this book is to introduce XML to a bioinformatics audience. It does so by introducing the fundamentals of XML, Document Type De?nitions (DTDs), XML Namespaces, XML Schema, and XML parsing, and illustrating these concepts with speci?c bioinformatics case studies. The book does not assume any previous knowledge of XML and is geared toward those who want a solid introduction to fundamental XML concepts. The book is divided into nine chapters: Chapter 1: Introduction to XML for Bioinformatics. This chapter provides an introduction to XML and describes the use of XML in biological data exchange. A bird’s-eye view of our ?rst case study, the Distributed Annotation System (DAS), is provided and we examine a sample DAS XML document. The chapter concludes with a discussion of the pros and cons of using XML in bioinformatic applications. Chapter 2: Fundamentals of XML and BSML. This chapter introduces the fundamental concepts of XML and the Bioinformatic Sequence Markup Language (BSML). We explore the origins of XML, de?ne basic rules for XML document structure, and introduce XML Na- spaces. We also explore several sample BSML documents and visualize these documents in the TM Rescentris Genomic Workspace Viewer.

XML for Bioinformatics

XML for Bioinformatics PDF Author: Ethan Cerami
Publisher: Springer Science & Business Media
ISBN: 0387274782
Category : Computers
Languages : en
Pages : 311

Get Book Here

Book Description
Introduction The goal of this book is to introduce XML to a bioinformatics audience. It does so by introducing the fundamentals of XML, Document Type De?nitions (DTDs), XML Namespaces, XML Schema, and XML parsing, and illustrating these concepts with speci?c bioinformatics case studies. The book does not assume any previous knowledge of XML and is geared toward those who want a solid introduction to fundamental XML concepts. The book is divided into nine chapters: Chapter 1: Introduction to XML for Bioinformatics. This chapter provides an introduction to XML and describes the use of XML in biological data exchange. A bird’s-eye view of our ?rst case study, the Distributed Annotation System (DAS), is provided and we examine a sample DAS XML document. The chapter concludes with a discussion of the pros and cons of using XML in bioinformatic applications. Chapter 2: Fundamentals of XML and BSML. This chapter introduces the fundamental concepts of XML and the Bioinformatic Sequence Markup Language (BSML). We explore the origins of XML, de?ne basic rules for XML document structure, and introduce XML Na- spaces. We also explore several sample BSML documents and visualize these documents in the TM Rescentris Genomic Workspace Viewer.

Spring 5.0 By Example

Spring 5.0 By Example PDF Author: Claudio Eduardo de Oliveira
Publisher: Packt Publishing Ltd
ISBN: 1788628020
Category : Computers
Languages : en
Pages : 346

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Book Description
Discover the real power of Spring Framework 5.0 and learn to create powerful applications in its newest version Key Features Learn reactive programming by implementing a reactive application with Spring Webflux Create a robust and scalable messaging application with Spring messaging support Apply your knowledge to build three real-world projects in Spring Book Description With growing demands, organizations are looking for systems that are robust and scalable. Therefore, the Spring Framework has become the most popular framework for Java development. It not only simplifies software development but also improves developer productivity. This book covers effective ways to develop robust applications in Java using Spring. The book has three parts, where each one covers the building of a comprehensive project in Java and Spring. In the first part, you will construct a CMS Portal using Spring's support for building REST APIs. You will also learn to integrate these APIs with AngularJS and later develop this application in a reactive fashion using Project Reactor, Spring WebFlux, and Spring Data. In the second part, you’ll understand how to build a messaging application, which will consume the Twitter API and perform filtering and transformations. Here, you will also learn about server-sent events and explore Spring’s support for Kotlin, which makes application development quick and efficient. In the last part, you will build a real microservice application using the most important techniques and patterns such as service discovery, circuit breakers, security, data streams, monitoring, and a lot more from this architectural style. By the end of the book, you will be confident about using Spring to build your applications. What you will learn Implement REST APIs with Spring REST support Introduce the Spring Boot and understand how it makes creating robust applications extremely simple Understand how Spring Data helps us add persistence in MongoDB and SQL databases Introduce Reactive Programming and use this with Spring Webflux Implement a Reactive REST client and learn how it can create asynchronous applications Create a robust, scalable, and fault tolerant application with Spring Messaging Implement a websocket to add interactive behaviors in your applications Introduce the Spring Cloud projects Who this book is for If you’re a developer starting out with Spring, then this book will help you learn about the new Spring 5.0 framework concepts followed by their implementation in Java and Kotlin. The book will also help experienced Spring developers gain insights into the new features added in Spring 5.0.

Management of Multimedia Networks and Services

Management of Multimedia Networks and Services PDF Author: Jordi Dalmau Royo
Publisher: Springer
ISBN: 3540320903
Category : Computers
Languages : en
Pages : 395

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Book Description
We are delighted to present the proceedings of the 8th IFIP/IEEE International Conference on Management of Multimedia Networks and Services (MMNS 2005). The MMNS 2005 conference was held in Barcelona, Spain on October 24–26, 2005. As in previous years, the conference brought together an international audience of researchers and scientists from industry and academia who are researching and developing state-of-the-art management systems, while creating a public venue for results dissemination and intellectual collaboration. This year marked a challenging chapter in the advancement of management systems for the wider management research community, with the growing complexities of the “so-called” multimedia over Internet, the proliferation of alternative wireless networks (WLL, WiFi and WiMAX) and 3G mobile services, intelligent and high-speed networks scalable multimedia services and the convergence of computing and communications for data, voice and video delivery. Contributions from the research community met this challenge with 65 paper submissions; 33 high-quality papers were subsequently selected to form the MMNS 2005 technical program. The diverse topics in this year’s program included wireless networking technologies, wireless network applications, quality of services, multimedia, Web applications, overlay network management, and bandwidth management.

Professional ASP.NET 2.0 XML

Professional ASP.NET 2.0 XML PDF Author: Thiru Thangarathinam
Publisher: John Wiley & Sons
ISBN: 0764596772
Category : Computers
Languages : en
Pages : 595

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Book Description
This work provides a comprehensive overview of how to use XML with ASP.NET to increase application efficiency, using two major case studies. It explores issues such as reading and writing XML, date validation and SQL servers.

XSLT

XSLT PDF Author: Doug Tidwell
Publisher: "O'Reilly Media, Inc."
ISBN: 9780596000530
Category : Computers
Languages : en
Pages : 488

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Book Description
Have you ever needed to convert documents from XML to HTML ? Or from one XML vocabulary to another ? Extensible Stylesheet Transformations (XSLT) provide a critical bridge between XML processing and more familiar HTML, as well as between XML vocabularies. XSLT demonstrates how to use this powerful, but complex, tool for a wide variety of conversions. Examples illustrate many different cases and techniques, giving you working code to explore and modify for your own purposes. Originally created for page layout, XSLT has grown into one of the tore technologies used by most developers processing XML. Through clear and entertaining explanations, this book shows you how to use XSLT as a general-purpose translation tool, a system for reorganizing document content, and a tool for generating multiple results (including HTML, VRML, and SVG) from the same content. Though XSLT is extremely useful, it can also be daunting to new users. XSLT uses an XML-based template syntax combined with a terse vocabulary called XPath that identifies how the template applies to the original document. The understanding of " variables " in XSLT is very different from the understanding of " variables " in procedural languages, for instance. Getting started with XSLT is difficult, and advanced techniques require a thorough understanding of how XSLT templates work and interact with one another. XSLT brings it all together, giving developers both a thorough tutorial and a reference. It examines both XSLT and XPath, a critical companion standard, and explores subjects ranging from basic transformations to complex sorting and linking. In addition, the book explores extension functions on various XSLT processors and how to combine multiple documents with XSLT. Examples demonstrate all of the techniques described. Examples also illustrate how to use XSLT to generate a ride variety of target document types, including HTML, SVG, JPEG, Java source code, and XSLT stylesheets.

Flexible and Efficient Information Handling

Flexible and Efficient Information Handling PDF Author: David Bell
Publisher: Springer
ISBN: 3540359710
Category : Computers
Languages : en
Pages : 311

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Book Description
This book constitutes the refereed proceedings of the 23rd British National Conference on Databases, BNCOD 23, held in Belfast, Northern Ireland, July 2006. The volume presents 12 revised full papers and 6 revised short papers, together with 2 invited lectures and 13 poster papers. Topical sections include data modelling and architectures and transaction management, data integration and interoperability and information retrieval, query processing and optimisation, data mining, data warehousing and more.

Advances in Data and Web Management

Advances in Data and Web Management PDF Author: Qing Li
Publisher: Springer
ISBN: 3642006728
Category : Computers
Languages : en
Pages : 704

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Book Description
This book constitutes the proceedings of the joint International Conference APWeb/WAIM 2009 which was held in Suzhou, China, during April 1-4, 2009. The 42 full papers presented together with 26 short papers and the abstracts of 2 keynote speeches were carefully reviewed and selected for inclusion in the book. The topics covered are query processing, topic-based techniques, Web data processing, multidimensional data analysis, stream data processing, data mining and its applications, and data management support to advanced applications.

Conceptual Modeling for Novel Application Domains

Conceptual Modeling for Novel Application Domains PDF Author: Manfred A. Jeusfeld
Publisher: Springer Science & Business Media
ISBN: 3540202579
Category : Computers
Languages : en
Pages : 406

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Book Description
This book constitutes the refereed joint proceedings of four international workshops held in conjunction with the 22nd International Conference on Conceptual Modelling, ER 2003, held in Chicago, IL, USA in October 2003. The 35 revised full papers presented together with introduction to the four workshops were carefully reviewed and selected from numerous submissions. In accordance with the respective workshops, the papers are organized in topical sections on conceptual modelling approaches for e-business, conceptual modelling quality, agent-oriented information systems, XML data and schema.

Programming WPF

Programming WPF PDF Author: Chris Sells
Publisher: "O'Reilly Media, Inc."
ISBN: 0596554796
Category : Computers
Languages : en
Pages : 874

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Book Description
If you want to build applications that take full advantage of Windows Vista's new user interface capabilities, you need to learn Microsoft's Windows Presentation Foundation (WPF). This new edition, fully updated for the official release of .NET 3.0, is designed to get you up to speed on this technology quickly. By page 2, you'll be writing a simple WPF application. By the end of Chapter 1, you'll have taken a complete tour of WPF and its major elements. WPF is the new presentation framework for Windows Vista that also works with Windows XP. It's a cornucopia of new technologies, which includes a new graphics engine that supports 3-D graphics, animation, and more; an XML-based markup language, called XAML, for declaring the structure of your Windows UI; and a radical new model for controls. This second edition includes new chapters on printing, XPS, 3-D, navigation, text and documents, along with a new appendix that covers Microsoft's new WPF/E platform for delivering richer UI through standard web browsers -- much like Adobe Flash. Content from the first edition has been significantly expanded and modified. Programming WPF includes: Scores of C# and XAML examples that show you what it takes to get a WPF application up and running, from a simple "Hello, Avalon" program to a tic-tac-toe game Insightful discussions of the powerful new programming styles that WPF brings to Windows development, especially its new model for controls A color insert to better illustrate WPF support for 3-D, color, and other graphics effects A tutorial on XAML, the new HTML-like markup language for declaring Windows UI An explanation and comparison of the features that support interoperability with Windows Forms and other Windows legacy applications WPF represents the best of the control-based Windows world and the content-based web world. Programming WPF helps you bring it all together.

Integrated Formal Methods

Integrated Formal Methods PDF Author: Judi M.T. Romijn
Publisher: Springer
ISBN: 354032240X
Category : Computers
Languages : en
Pages : 416

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Book Description
This book constitutes the refereed proceedings of the 5th International Conference on Integrated Formal Methods, IFM 2005, held in Eindhoven, The Netherlands, in November/December 2005. The 19 revised full papers presented together with 3 invited papers were carefully reviewed and selected from 40 submissions. The papers are organized in topical sections on components, state/event-based verification, system development, applications of B, tool support, non-software domains, semantics, as well as UML and statecharts.