Dynamic Biosystem Modeling & Simulation Methodology - Integrated & Accessible

Dynamic Biosystem Modeling & Simulation Methodology - Integrated & Accessible PDF Author: Joseph Distefano, 3rd
Publisher:
ISBN: 9781733495004
Category :
Languages : en
Pages : 354

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Book Description
This textbook is uniquely crafted for use in teaching undergraduate students in the life, math, computer and other sciences and engineering. It is INTRODUCTORY LEVEL, for students who have taken or are currently completing their undergraduate math requirements, and are acquiring analytical-thinking and doing skills, along with introductory biology, chemistry and physics subject matter. It's about learning HOW to model and simulate dynamic biological systems, which also makes it useful for graduate students and professional researchers who want a more rigorous treatment of introductory life science math modeling, integrated with the biology. It brings together the multidisciplinary pedagogy of these subjects into a SINGLE INTRODUCTORY MODELING METHODOLOGY COURSE, crystalizing the experience of an author who has been teaching dynamic biosystems modeling and simulation methodology for the life sciences for more than 50 years. DiStefano maximizes accessibility and "systems-math-biology" integration - without diminishing conceptual rigor. Minimally essential applied math and SYSTEMS ENGINEERING METHODS are included, along with a synopsis of the biology and physiology underlying dynamic biosystem modeling, all in a modeling pedagogy context. This textbook fills a major need in the training of contemporary biology students.Dynamic biosystems modeling methodology is presented over 12 distinctive chapters, primarily with systems diagrams and simple differential equations and algebra for expressing them quantitatively, integrated with the biology. Solving and analyzing (quantifying) the biomodels are then accomplished by simulation, using a facile control system simulation language Simulink, a GUI/Matlab toolbox that emulates control systems diagramming, rather than by "coding" the model in a standard computer programming language. Students see and work with the system model - not the code - a big plus. Higher math and complex analytical solutions are avoided.Each chapter begins with a list of LEARNING GOALS, to help with both perspective for the chapter material, and retrospective, to measure learning. EXERCISES for the student at the end of each chapter are designed to test and reinforce learning. A SOLUTIONS MANUAL for chapter exercises is available to qualified instructors from the author, as are LECTURE SLIDES and LAB ASSIGNMENTS AND SOLUTIONS, for courses that adopt the textbook for student use.

Dynamic Biosystem Modeling & Simulation Methodology - Integrated & Accessible

Dynamic Biosystem Modeling & Simulation Methodology - Integrated & Accessible PDF Author: Joseph Distefano, 3rd
Publisher:
ISBN: 9781733495004
Category :
Languages : en
Pages : 354

Get Book Here

Book Description
This textbook is uniquely crafted for use in teaching undergraduate students in the life, math, computer and other sciences and engineering. It is INTRODUCTORY LEVEL, for students who have taken or are currently completing their undergraduate math requirements, and are acquiring analytical-thinking and doing skills, along with introductory biology, chemistry and physics subject matter. It's about learning HOW to model and simulate dynamic biological systems, which also makes it useful for graduate students and professional researchers who want a more rigorous treatment of introductory life science math modeling, integrated with the biology. It brings together the multidisciplinary pedagogy of these subjects into a SINGLE INTRODUCTORY MODELING METHODOLOGY COURSE, crystalizing the experience of an author who has been teaching dynamic biosystems modeling and simulation methodology for the life sciences for more than 50 years. DiStefano maximizes accessibility and "systems-math-biology" integration - without diminishing conceptual rigor. Minimally essential applied math and SYSTEMS ENGINEERING METHODS are included, along with a synopsis of the biology and physiology underlying dynamic biosystem modeling, all in a modeling pedagogy context. This textbook fills a major need in the training of contemporary biology students.Dynamic biosystems modeling methodology is presented over 12 distinctive chapters, primarily with systems diagrams and simple differential equations and algebra for expressing them quantitatively, integrated with the biology. Solving and analyzing (quantifying) the biomodels are then accomplished by simulation, using a facile control system simulation language Simulink, a GUI/Matlab toolbox that emulates control systems diagramming, rather than by "coding" the model in a standard computer programming language. Students see and work with the system model - not the code - a big plus. Higher math and complex analytical solutions are avoided.Each chapter begins with a list of LEARNING GOALS, to help with both perspective for the chapter material, and retrospective, to measure learning. EXERCISES for the student at the end of each chapter are designed to test and reinforce learning. A SOLUTIONS MANUAL for chapter exercises is available to qualified instructors from the author, as are LECTURE SLIDES and LAB ASSIGNMENTS AND SOLUTIONS, for courses that adopt the textbook for student use.

Dynamic Biosystem Modeling & Simulation Methodology - Integrated & Accessible

Dynamic Biosystem Modeling & Simulation Methodology - Integrated & Accessible PDF Author: Joseph Distefano, 3rd
Publisher: Biomodeling
ISBN: 9781733495028
Category :
Languages : en
Pages : 354

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Book Description
This textbook is uniquely crafted for use in teaching undergraduate students in the life, math, computer and other sciences and engineering. It is INTRODUCTORY LEVEL, for students who have taken or are currently completing their undergraduate math requirements, and are acquiring analytical-thinking and doing skills, along with introductory biology, chemistry and physics subject matter. It's about learning HOW to model and simulate dynamic biological systems, which also makes it useful for graduate students and professional researchers who want a more rigorous treatment of introductory life science math modeling, integrated with the biology. It brings together the multidisciplinary pedagogy of these subjects into a SINGLE INTRODUCTORY MODELING METHODOLOGY COURSE, crystalizing the experience of an author who has been teaching dynamic biosystems modeling and simulation methodology for the life sciences for more than 50 years. DiStefano maximizes accessibility and "systems-math-biology" integration - without diminishing conceptual rigor. Minimally essential applied math and SYSTEMS ENGINEERING METHODS are included, along with a synopsis of the biology and physiology underlying dynamic biosystem modeling, all in a modeling pedagogy context. This textbook fills a major need in the training of contemporary biology students.Dynamic biosystems modeling methodology is presented over 12 distinctive chapters, primarily with systems diagrams and simple differential equations and algebra for expressing them quantitatively, integrated with the biology. Solving and analyzing (quantifying) the biomodels are then accomplished by simulation, using a facile control system simulation language Simulink, a GUI/Matlab toolbox that emulates control systems diagramming, rather than by "coding" the model in a standard computer programming language. Students see and work with the system model - not the code - a big plus. Higher math and complex analytical solutions are avoided.Each chapter begins with a list of LEARNING GOALS, to help with both perspective for the chapter material, and retrospective, to measure learning. EXERCISES for the student at the end of each chapter are designed to test and reinforce learning. A SOLUTIONS MANUAL for chapter exercises is available to qualified instructors from the author, as are LECTURE SLIDES and LAB ASSIGNMENTS AND SOLUTIONS, for courses that adopt the textbook for student use.

Dynamic Systems Biology Modeling and Simulation

Dynamic Systems Biology Modeling and Simulation PDF Author: Joseph DiStefano III
Publisher: Academic Press
ISBN: 0124104932
Category : Science
Languages : en
Pages : 886

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Book Description
Dynamic Systems Biology Modeling and Simuation consolidates and unifies classical and contemporary multiscale methodologies for mathematical modeling and computer simulation of dynamic biological systems – from molecular/cellular, organ-system, on up to population levels. The book pedagogy is developed as a well-annotated, systematic tutorial – with clearly spelled-out and unified nomenclature – derived from the author's own modeling efforts, publications and teaching over half a century. Ambiguities in some concepts and tools are clarified and others are rendered more accessible and practical. The latter include novel qualitative theory and methodologies for recognizing dynamical signatures in data using structural (multicompartmental and network) models and graph theory; and analyzing structural and measurement (data) models for quantification feasibility. The level is basic-to-intermediate, with much emphasis on biomodeling from real biodata, for use in real applications. - Introductory coverage of core mathematical concepts such as linear and nonlinear differential and difference equations, Laplace transforms, linear algebra, probability, statistics and stochastics topics - The pertinent biology, biochemistry, biophysics or pharmacology for modeling are provided, to support understanding the amalgam of "math modeling with life sciences - Strong emphasis on quantifying as well as building and analyzing biomodels: includes methodology and computational tools for parameter identifiability and sensitivity analysis; parameter estimation from real data; model distinguishability and simplification; and practical bioexperiment design and optimization - Companion website provides solutions and program code for examples and exercises using Matlab, Simulink, VisSim, SimBiology, SAAMII, AMIGO, Copasi and SBML-coded models - A full set of PowerPoint slides are available from the author for teaching from his textbook. He uses them to teach a 10 week quarter upper division course at UCLA, which meets twice a week, so there are 20 lectures. They can easily be augmented or stretched for a 15 week semester course - Importantly, the slides are editable, so they can be readily adapted to a lecturer's personal style and course content needs. The lectures are based on excerpts from 12 of the first 13 chapters of DSBMS. They are designed to highlight the key course material, as a study guide and structure for students following the full text content - The complete PowerPoint slide package (~25 MB) can be obtained by instructors (or prospective instructors) by emailing the author directly, at: [email protected]

The Handbook of Computer Networks, Distributed Networks, Network Planning, Control, Management, and New Trends and Applications

The Handbook of Computer Networks, Distributed Networks, Network Planning, Control, Management, and New Trends and Applications PDF Author: Hossein Bidgoli
Publisher:
ISBN:
Category : Business & Economics
Languages : en
Pages : 1136

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Book Description
The Handbook of Computer Networks is the third set of reference books from leading author and Professor of Management Information Systems at California State University, Bakersfield, Hossein Bidgoli. The Handbook of Computer Networks is designed to arm researchers, practitioners, students, and managers with in-depth understanding of this important and fast growing field in its broadest scope and in an applied and functional framework. Each volume incorporates state of the art core information and networking topics, practical applications and coverage of the emerging issues in the computer networking and data communications fields.

Process Integration in Biochemical Engineering

Process Integration in Biochemical Engineering PDF Author: Urs von Stockar
Publisher: Springer
ISBN: 3540367829
Category : Technology & Engineering
Languages : en
Pages : 207

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Book Description
Process integration has been one of the most active research fields in Biochemical Engineering over the last decade and it will continue to be so if bioprocessing is to become more rational, efficient and productive. This volume outlines what has been achieved in recent years. Written by experts who have made important contributions to the European Science, Foundation Program on Process Integration in Biochemical Engineering, the volume focuses on the progress made and the major opportunities, and in addition on the limitations and the challenges in bioprocess integration that lie ahead. The concept of bioprocess integration is treated at various levels, including integration at the molecular, biological, bioreactor and plant levels, but also accounting for the integration of separation and mass transfer operations and biology, fluid dynamics and physiology, as well as basic science and process technology.

Computational Systems Biology

Computational Systems Biology PDF Author: Andres Kriete
Publisher: Academic Press
ISBN: 0124059384
Category : Science
Languages : en
Pages : 549

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Book Description
This comprehensively revised second edition of Computational Systems Biology discusses the experimental and theoretical foundations of the function of biological systems at the molecular, cellular or organismal level over temporal and spatial scales, as systems biology advances to provide clinical solutions to complex medical problems. In particular the work focuses on the engineering of biological systems and network modeling. - Logical information flow aids understanding of basic building blocks of life through disease phenotypes - Evolved principles gives insight into underlying organizational principles of biological organizations, and systems processes, governing functions such as adaptation or response patterns - Coverage of technical tools and systems helps researchers to understand and resolve specific systems biology problems using advanced computation - Multi-scale modeling on disparate scales aids researchers understanding of dependencies and constraints of spatio-temporal relationships fundamental to biological organization and function.

Computer Simulation Validation

Computer Simulation Validation PDF Author: Claus Beisbart
Publisher: Springer
ISBN: 3319707663
Category : Computers
Languages : en
Pages : 1056

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Book Description
This unique volume introduces and discusses the methods of validating computer simulations in scientific research. The core concepts, strategies, and techniques of validation are explained by an international team of pre-eminent authorities, drawing on expertise from various fields ranging from engineering and the physical sciences to the social sciences and history. The work also offers new and original philosophical perspectives on the validation of simulations. Topics and features: introduces the fundamental concepts and principles related to the validation of computer simulations, and examines philosophical frameworks for thinking about validation; provides an overview of the various strategies and techniques available for validating simulations, as well as the preparatory steps that have to be taken prior to validation; describes commonly used reference points and mathematical frameworks applicable to simulation validation; reviews the legal prescriptions, and the administrative and procedural activities related to simulation validation; presents examples of best practice that demonstrate how methods of validation are applied in various disciplines and with different types of simulation models; covers important practical challenges faced by simulation scientists when applying validation methods and techniques; offers a selection of general philosophical reflections that explore the significance of validation from a broader perspective. This truly interdisciplinary handbook will appeal to a broad audience, from professional scientists spanning all natural and social sciences, to young scholars new to research with computer simulations. Philosophers of science, and methodologists seeking to increase their understanding of simulation validation, will also find much to benefit from in the text.

Selected Water Resources Abstracts

Selected Water Resources Abstracts PDF Author:
Publisher:
ISBN:
Category : Hydrology
Languages : en
Pages : 584

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Book Description


Process Modelling and Simulation

Process Modelling and Simulation PDF Author: César de Prada
Publisher: MDPI
ISBN: 3039214551
Category : Technology & Engineering
Languages : en
Pages : 298

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Book Description
Since process models are nowadays ubiquitous in many applications, the challenges and alternatives related to their development, validation, and efficient use have become more apparent. In addition, the massive amounts of both offline and online data available today open the door for new applications and solutions. However, transforming data into useful models and information in the context of the process industry or of bio-systems requires specific approaches and considerations such as new modelling methodologies incorporating the complex, stochastic, hybrid and distributed nature of many processes in particular. The same can be said about the tools and software environments used to describe, code, and solve such models for their further exploitation. Going well beyond mere simulation tools, these advanced tools offer a software suite built around the models, facilitating tasks such as experiment design, parameter estimation, model initialization, validation, analysis, size reduction, discretization, optimization, distributed computation, co-simulation, etc. This Special Issue collects novel developments in these topics in order to address the challenges brought by the use of models in their different facets, and to reflect state of the art developments in methods, tools and industrial applications.

Fundamentals of Multibody Dynamics

Fundamentals of Multibody Dynamics PDF Author: Farid Amirouche
Publisher: Springer Science & Business Media
ISBN: 0817644067
Category : Technology & Engineering
Languages : en
Pages : 692

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Book Description
This textbook – a result of the author’s many years of research and teaching – brings together diverse concepts of the versatile tool of multibody dynamics, combining the efforts of many researchers in the field of mechanics.