Computational studies of RNA and DNA

Computational studies of RNA and DNA PDF Author: Jirí Šponer
Publisher: Springer Science & Business Media
ISBN: 1402048513
Category : Science
Languages : en
Pages : 638

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Book Description
This book integrates modern computational studies of nucleic acids, ranging from advanced electronic structure quantum chemical calculations through explicit solvent molecular dynamics (MD) simulations up to mesoscopic modelling, with the main focus given to the MD field. It gives an equal emphasis to the leading methods and applications while successes as well as pitfalls of the computational techniques are discussed.

Computational studies of RNA and DNA

Computational studies of RNA and DNA PDF Author: Jirí Šponer
Publisher: Springer Science & Business Media
ISBN: 1402048513
Category : Science
Languages : en
Pages : 638

Get Book Here

Book Description
This book integrates modern computational studies of nucleic acids, ranging from advanced electronic structure quantum chemical calculations through explicit solvent molecular dynamics (MD) simulations up to mesoscopic modelling, with the main focus given to the MD field. It gives an equal emphasis to the leading methods and applications while successes as well as pitfalls of the computational techniques are discussed.

Computational Studies of DNA Structure and Recognition

Computational Studies of DNA Structure and Recognition PDF Author: Christina Rebecca Grindon
Publisher:
ISBN:
Category :
Languages : en
Pages :

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Book Description


Computational Studies on DNA Structures

Computational Studies on DNA Structures PDF Author: Yocheved Baime
Publisher:
ISBN:
Category : DNA.
Languages : en
Pages : 158

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Book Description


Experimental and Computational Studies of DNA Structure Using the Hydroxyl Radical as a Chemical Probe

Experimental and Computational Studies of DNA Structure Using the Hydroxyl Radical as a Chemical Probe PDF Author: Jason Adam Greenbaum
Publisher:
ISBN:
Category : DNA damage
Languages : en
Pages : 388

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Book Description


Computational Molecular Biology

Computational Molecular Biology PDF Author: J. Leszczynski
Publisher: Elsevier
ISBN: 008052964X
Category : Science
Languages : en
Pages : 663

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Book Description
This book covers applications of computational techniques to biological problems. These techniques are based by an ever-growing number of researchers with different scientific backgrounds - biologists, chemists, and physicists.The rapid development of molecular biology in recent years has been mirrored by the rapid development of computer hardware and software. This has resulted in the development of sophisticated computational techniques and a wide range of computer simulations involving such methods. Among the areas where progress has been profound is in the modeling of DNA structure and function, the understanding at a molecular level of the role of solvents in biological phenomena, the calculation of the properties of molecular associations in aqueous solutions, computationally assisted drug design, the prediction of protein structure, and protein - DNA recognition, to mention just a few examples. This volume comprises a balanced blend of contributions covering such topics. They reveal the details of computational approaches designed for biomoleucles and provide extensive illustrations of current applications of modern techniques.A broad group of readers ranging from beginning graduate students to molecular biology professions should be able to find useful contributions in this selection of reviews.

The Alkali Metal Ions: Their Role for Life

The Alkali Metal Ions: Their Role for Life PDF Author: Astrid Sigel
Publisher: Springer
ISBN: 3319217569
Category : Science
Languages : en
Pages : 663

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Book Description
MILS-16 provides an up-to-date review of the impact of alkali metal ions on life. Their bioinorganic chemistry and analytical determination, the solid state structures of bio-ligand complexes and the properties of alkali metal ions in solution in the context of all kinds of biologically relevant ligands are covered, this includes proteins (enzymes) and nucleic acids (G-quadruplexes). Minerals containing sodium (Na+) and potassium (K+) are abundant in the Earth's crust, making Na+ and K+ easily available. In contrast, the alkali elements lithium (Li+), rubidium, and cesium are rare and the radioactive francium occurs only in traces. Since the intra- and extracellular, as well as the compartmental concentrations of Na+ and K+ differ significantly, homeostasis and active transport of these ions are important; this involves transporters/carriers and pore-forming ion channel proteins. Systems like Na+/K+-ATPases, H+/K+-ATPases or Na+/H+ antiporters are thoroughly discussed. The role of K+ in photosynthesis and the role of Na+ in charging the "battery of life" are pointed out. Also, the relationships between alkali metal ions and diseases (e.g., Parkinson or traumatic brain injury) are covered and the relevance of Li+ salts in medicine (pharmacology and mechanism) is reviewed. This and more is treated in an authoritative and timely manner in the 16 stimulating chapters of Volume 16, The Alkali Metal Ions: Their Role for Life, which are written by 44 internationally recognized experts from 12 nations. The impact of this vibrant research area is manifested in nearly 3000 references, over 30 tables and more than 150 illustrations (two thirds in color). MILS-16 also provides excellent information for teaching. Astrid Sigel, Helmut Sigel, and Roland K. O. Sigel have long-standing interests in Biological Inorganic Chemistry. Their research focuses on metal ion interactions with nucleotides and nucleic acids and on related topics. They edited previously 44 volumes in the series Metal Ions in Biological Systems.

Structural DNA Nanotechnology

Structural DNA Nanotechnology PDF Author: Nadrian C. Seeman
Publisher: Cambridge University Press
ISBN: 0521764483
Category : Computers
Languages : en
Pages : 269

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Book Description
Written by the founder of the field, this is a comprehensive and accessible introduction to structural DNA nanotechnology.

Biological Sequence Analysis

Biological Sequence Analysis PDF Author: Richard Durbin
Publisher: Cambridge University Press
ISBN: 113945739X
Category : Science
Languages : en
Pages : 372

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Book Description
Probabilistic models are becoming increasingly important in analysing the huge amount of data being produced by large-scale DNA-sequencing efforts such as the Human Genome Project. For example, hidden Markov models are used for analysing biological sequences, linguistic-grammar-based probabilistic models for identifying RNA secondary structure, and probabilistic evolutionary models for inferring phylogenies of sequences from different organisms. This book gives a unified, up-to-date and self-contained account, with a Bayesian slant, of such methods, and more generally to probabilistic methods of sequence analysis. Written by an interdisciplinary team of authors, it aims to be accessible to molecular biologists, computer scientists, and mathematicians with no formal knowledge of the other fields, and at the same time present the state-of-the-art in this new and highly important field.

Radiation Induced Molecular Phenomena in Nucleic Acids

Radiation Induced Molecular Phenomena in Nucleic Acids PDF Author: Manoj Shukla
Publisher: Springer Science & Business Media
ISBN: 1402081847
Category : Science
Languages : en
Pages : 677

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Book Description
Comprehensive theoretical and experimental analysis of UV-radiation and low energy electron induced phenomena in nucleic acid bases (NABs) and base assemblies are presented in this book. NABs are highly photostable; the absorbed energy is dissipated in the form of ultrafast nonradiative decay. This book highlights the possible mechanisms of these phenomena which is important for all living species and discusses technical challenges in exploration of these processes.

Computational Molecular Biology

Computational Molecular Biology PDF Author: Arthur M. Lesk
Publisher: Oxford University Press, USA
ISBN:
Category : Language Arts & Disciplines
Languages : en
Pages : 280

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Book Description
An overview of the field of computing with protein and nucleic acid sequences, aimed at investigators determining sequences, those who analyze them to identify unknown proteins and interpret their function, and those interested in the three-dimensional structures of biological molecules.