Alternative Splicing Regulation in Plants

Alternative Splicing Regulation in Plants PDF Author: Ezequiel Petrillo
Publisher: Frontiers Media SA
ISBN: 2889639746
Category : Nature
Languages : en
Pages : 175

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Book Description
This eBook is a collection of articles from a Frontiers Research Topic. Frontiers Research Topics are very popular trademarks of the Frontiers Journals Series: they are collections of at least ten articles, all centered on a particular subject. With their unique mix of varied contributions from Original Research to Review Articles, Frontiers Research Topics unify the most influential researchers, the latest key findings and historical advances in a hot research area! Find out more on how to host your own Frontiers Research Topic or contribute to one as an author by contacting the Frontiers Editorial Office: frontiersin.org/about/contact.

Nuclear pre-mRNA Processing in Plants

Nuclear pre-mRNA Processing in Plants PDF Author: A. S. N. Reddy
Publisher: Springer Science & Business Media
ISBN: 3540767762
Category : Science
Languages : en
Pages : 323

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Book Description
During the last few years, tremendous progress has been made in understanding various aspects of pre-mRNA processing. This book, with contributions from leading scientists in this area, summarizes recent advances in nuclear pre-mRNA processing in plants. It provides researchers in the field, as well as those in related areas, with an up-to-date and comprehensive, yet concise, overview of the current status and future potential of this research in understanding plant biology.

Handbook of Photosensory Receptors

Handbook of Photosensory Receptors PDF Author: Winslow R. Briggs
Publisher: John Wiley & Sons
ISBN: 3527604855
Category : Science
Languages : en
Pages : 496

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Book Description
This first complete resource on photosensory receptors from bacteria, plants and animals compiles the data on all known classes of photoreceptors, creating a must-have reference for students and researchers for many years to come. Among the editors are the current and a former president of the American Society for Photobiology.

Regulation of Alternative Splicing

Regulation of Alternative Splicing PDF Author: Philippe Jeanteur
Publisher:
ISBN: 9783662097298
Category :
Languages : en
Pages : 266

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Book Description


Relevance and Regulation of Alternative Splicing in Plant Heat Stress Response: Current Understanding and Future Directions

Relevance and Regulation of Alternative Splicing in Plant Heat Stress Response: Current Understanding and Future Directions PDF Author: Remus R. E. Rosenkranz
Publisher:
ISBN:
Category :
Languages : en
Pages : 0

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Book Description
Alternative splicing (AS) is a major mechanism for gene expression in eukaryotes, increasing proteome diversity but also regulating transcriptome abundance. High temperatures have a strong impact on the splicing profile of many genes and therefore AS is considered as an integral part of heat stress response. While many studies have established a detailed description of the diversity of the RNAome under heat stress in different plant species and stress regimes, little is known on the underlying mechanisms that control this temperature-sensitive process. AS is mainly regulated by the activity of splicing regulators. Changes in the abundance of these proteins through transcription and AS, post-translational modifications and interactions with exonic and intronic cis-elements and core elements of the spliceosomes modulate the outcome of pre-mRNA splicing. As a major part of pre-mRNAs are spliced co-transcriptionally, the chromatin environment along with the RNA polymerase II elongation play a major role in the regulation of pre-mRNA splicing under heat stress conditions. Despite its importance, our understanding on the regulation of heat stress sensitive AS in plants is scarce. In this review, we summarize the current status of knowledge on the regulation of AS in plants under heat stress conditions. We discuss possible implications of different pathways based on results from non-plant systems to provide a perspective for researchers who aim to elucidate the molecular basis of AS under high temperatures.

Plant RNA Biology

Plant RNA Biology PDF Author: Dóra Szakonyi
Publisher: Frontiers Media SA
ISBN: 2889630250
Category :
Languages : en
Pages : 167

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Book Description
Discoveries from the past decades revealed that RNA molecules are much more than inert intermediates between the coding DNA sequences and their functional products, proteins. Today, RNAs are recognized as active regulatory molecules influencing gene expression, chromatin organization and genome stability, thus impacting all aspects of plant life including development, growth, reproduction and stress tolerance. Innovations in methodologies, the expanding application of next-generation sequencing technologies, and the creation of public datasets and databases have exposed a new universe of RNA-based mechanisms and led to the discovery of new families of non-coding RNAs, uncovered the large extent of alternative splicing events, and highlighted the potential roles of RNA modifications and RNA secondary structures. Furthermore, considerable advances have been made in identifying RNA-binding and processing factors involved in the synthesis and maturation of different forms of RNA molecules as well as in RNA processing, biochemical modifications or degradation. This Research Topic showcases the broad biological significance of RNAs in plant systems and contains eight original research articles, one review and four mini-reviews, covering various RNA-based mechanisms in higher plants. Emerging new technologies and novel multidisciplinary approaches are empowering the scientific community and will expectedly bring novel insights into our understanding of the mechanisms through which RNA is regulated and regulates biological processes in plant cells.

Transcription and Splicing

Transcription and Splicing PDF Author: B. D. Hames
Publisher: Oxford University Press, USA
ISBN:
Category : Music
Languages : en
Pages : 238

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Book Description
This book gives a co-ordinated review of our present knowledge of eukaryotic RNA synthesis.

Genome-wide Analysis of Splicing Related Genes and Alternative Splicing in Plants

Genome-wide Analysis of Splicing Related Genes and Alternative Splicing in Plants PDF Author: Bing-Bing Wang
Publisher:
ISBN:
Category :
Languages : en
Pages : 332

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Book Description
The phenomenon of pre-mRNA splicing in eukaryotes has been mostly studied in mammalian and yeast systems. The splicing machinery in plants is thought to be largely conserved relative to animal and fungal organisms. This thesis encompasses systematic studies of splicing-related genes and alternative splicing (AS) in plants. A total of 74 snRNA genes and 395 genes encoding splicing related proteins were identified in Arabidopsis, including the previously elusive U4atac snRNA gene. About 50% of the splicing related genes are duplicated in plants. The duplication ratios for splicing regulators are even higher, indicating that the splicing mechanism is generally conserved among plants, but that the regulation of splicing may be more variable and flexible. Over 30% of the splicing related genes can be alternatively spliced. Overall, both Arabidopsis and rice have about 22% of the expressed genes being alternatively spliced, and both have about 55% AS events to be intron retention (IntronR). The consistent high frequency of IntronR suggests prevalence of splice site recognition by intron definition in plants. 40% of Arabidopsis AS genes are also alternatively spliced in rice, with some examples strongly suggesting a role of the AS event as an evolutionary conserved mechanism of post-transcriptional regulation. U2AF is an essential splicing factor in animals. The two copies of Arabidopsis U2AF1 (AUSa and AUSb) were experimentally characterized as a case study. AUSa expressed at a higher level than AUSb in most tissues. Altered expression levels of AUSa or AUSb cause pleiotropic phenotypes and splicing pattern changes for some pre-mRNA, indicating the importance of AUSa/b for correct splice site recognition. A novel C-terminal domain (SERE) is highly conserved in all seed plant U2AF1 homologs, suggesting its important function specific to higher plants. All together, similarities as well as differences were revealed between the splicing mechanisms in plants and mammalians, demonstrating that organisms have evolved special mechanisms to ensure the efficient and accurate splicing in different environments. Two databases (Arabidopsis Splicing Related Genes (ASRG), http://www.plantgdb.org/SRGD/ASRG/, and Alternative Splicing in Plants (ASIP), http://www.plantgdb.org/ASIP/) were constructed for the community to use and will facilitate studies of plant splicing mechanisms.

Heat Stress Tolerance in Plants

Heat Stress Tolerance in Plants PDF Author: Shabir H. Wani
Publisher: John Wiley & Sons
ISBN: 1119432367
Category : Science
Languages : en
Pages : 315

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Book Description
Demystifies the genetic, biochemical, physiological, and molecular mechanisms underlying heat stress tolerance in plants Heat stress—when high temperatures cause irreversible damage to plant function or development—severely impairs the growth and yield of agriculturally important crops. As the global population mounts and temperatures continue to rise, it is crucial to understand the biochemical, physiological, and molecular mechanisms of thermotolerance to develop ‘climate-smart’ crops. Heat Stress Tolerance in Plants provides a holistic, cross-disciplinary survey of the latest science in this important field. Presenting contributions from an international team of plant scientists and researchers, this text examines heat stress, its impact on crop plants, and various mechanisms to modulate tolerance levels. Topics include recent advances in molecular genetic approaches to increasing heat tolerance, the potential role of biochemical and molecular markers in screening germplasm for thermotolerance, and the use of next-generation sequencing to unravel the novel genes associated with defense and metabolite pathways. This insightful book: Places contemporary research on heat stress in plants within the context of global climate change and population growth Includes diverse analyses from physiological, biochemical, molecular, and genetic perspectives Explores various approaches to increasing heat tolerance in crops of high commercial value, such as cotton Discusses the applications of plant genomics in the development of thermotolerant ‘designer crops’ An important contribution to the field, Heat Stress Tolerance in Plants is an invaluable resource for scientists, academics, students, and researchers working in fields of pulse crop biochemistry, physiology, genetics, breeding, and biotechnology.

Long Noncoding RNAs in Plants

Long Noncoding RNAs in Plants PDF Author: Santosh Kumar Upadhyay
Publisher: Academic Press
ISBN: 0128214635
Category : Science
Languages : en
Pages : 392

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Book Description
The growth of human population has increased the demand for improved yield and quality of crops and horticultural plants. However, plant productivity continues to be threatened by stresses such as heat, cold, drought, heavy metals, UV radiations, bacterial and fungal pathogens, and insect pests. Long noncoding RNAs are associated with various developmental pathways, regulatory systems, abiotic and biotic stress responses and signaling, and can provide an alternative strategy for stress management in plants. Long Noncoding RNAs in Plants: Roles in development and stress provides the most recent advances in LncRNAs, including identification, characterization, and their potential applications and uses. Introductory chapters include the basic features and brief history of development of lncRNAs studies in plants. The book then provides the knowledge about the lncRNAs in various important agricultural and horticultural crops such as cereals, legumes, fruits, vegetables, and fiber crop cotton, and their roles and applications in abiotic and biotic stress management. - Includes the latest advances and research in long noncoding RNAs in plants - Provides alternative strategies for abiotic and biotic stress management in horticultural plants and agricultural crops - Focuses on the application and uses of long noncoding RNAs